Wall clock time and date at job start Tue Mar 31 2020 17:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46678 * 2 1 4 4 H 1.08996 * 109.47342 * 55.00197 * 3 2 1 5 5 N 1.46502 * 109.47302 * 295.00017 * 3 2 1 6 6 C 1.34769 * 120.00008 * 85.00255 * 5 3 2 7 7 O 1.21723 * 120.00323 * 359.97438 * 6 5 3 8 8 C 1.46260 * 120.00205 * 180.02562 * 6 5 3 9 9 C 1.35019 * 119.99953 * 179.97438 * 8 6 5 10 10 C 1.46960 * 119.99966 * 179.97438 * 9 8 6 11 11 C 1.40026 * 120.10278 * 180.02562 * 10 9 8 12 12 C 1.37594 * 119.89671 * 179.97438 * 11 10 9 13 13 C 1.39178 * 120.10069 * 0.25354 * 12 11 10 14 14 O 1.35579 * 119.89545 * 179.74677 * 13 12 11 15 15 C 1.34785 * 117.00142 * 354.44034 * 14 13 12 16 16 H 1.08005 * 119.99845 * 5.06100 * 15 14 13 17 17 C 1.38717 * 119.99804 * 185.06117 * 15 14 13 18 18 N 1.31502 * 120.00291 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99602 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47470 * 59.99762 * 19 17 15 21 21 H 1.48497 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47053 * 299.99462 * 19 17 15 23 23 C 1.39173 * 120.20483 * 359.49052 * 13 12 11 24 24 C 1.37597 * 120.09959 * 0.50940 * 23 13 12 25 25 C 1.50706 * 109.46947 * 175.00055 * 3 2 1 26 26 O 1.21277 * 119.99780 * 120.00399 * 25 3 2 27 27 N 1.34770 * 119.99990 * 299.99848 * 25 3 2 28 28 C 1.46501 * 120.00072 * 180.02562 * 27 25 3 29 29 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47525 * 299.99675 * 1 2 3 31 31 H 1.08997 * 109.47304 * 60.00263 * 1 2 3 32 32 H 1.08999 * 109.47525 * 240.00325 * 2 1 3 33 33 H 1.08997 * 109.47304 * 119.99737 * 2 1 3 34 34 H 0.97000 * 119.99537 * 264.99977 * 5 3 2 35 35 H 1.07994 * 119.99446 * 359.97438 * 8 6 5 36 36 H 1.08003 * 120.00342 * 359.97438 * 9 8 6 37 37 H 1.07997 * 120.04748 * 359.95180 * 11 10 9 38 38 H 1.08000 * 119.95146 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99987 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.95191 * 180.26076 * 23 13 12 41 41 H 1.08000 * 120.05078 * 179.77151 * 24 23 13 42 42 H 0.96999 * 120.00261 * 0.02562 * 27 25 3 43 43 H 1.08992 * 109.47516 * 59.99651 * 28 27 25 44 44 H 1.09001 * 109.47462 * 180.02562 * 28 27 25 45 45 H 1.09001 * 109.47121 * 299.99686 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 7 1.6522 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3426 2.6318 -0.4310 8 6 0.0478 3.3178 -2.6168 9 6 -1.1719 3.8853 -2.7323 10 6 -1.5608 4.5423 -3.9880 11 6 -2.8250 5.1319 -4.1099 12 6 -3.1845 5.7465 -5.2873 13 6 -2.2957 5.7779 -6.3579 14 8 -2.6562 6.3801 -7.5179 15 6 -3.9253 6.8251 -7.6078 16 1 -4.5793 6.7687 -6.7501 17 6 -4.3913 7.3555 -8.8018 18 7 -3.5949 7.4247 -9.8459 19 14 -6.1499 7.9730 -8.9260 20 1 -6.3622 9.0643 -7.9415 21 1 -6.3980 8.4882 -10.2965 22 1 -7.0875 6.8578 -8.6388 23 6 -1.0362 5.1979 -6.2396 24 6 -0.6680 4.5811 -5.0660 25 6 3.5418 1.4444 0.1238 26 8 4.2214 1.9437 -0.7477 27 7 4.1297 0.8913 1.2031 28 6 5.5897 0.8936 1.3237 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2718 2.1232 -1.9977 35 1 0.7375 3.3464 -3.4473 36 1 -1.8619 3.8563 -1.9018 37 1 -3.5169 5.1040 -3.2811 38 1 -4.1595 6.2011 -5.3825 39 1 -3.9209 7.7953 -10.6809 40 1 -0.3482 5.2283 -7.0716 41 1 0.3082 4.1280 -4.9763 42 1 3.5861 0.4917 1.9000 43 1 5.9527 1.9213 1.3239 44 1 5.8782 0.4058 2.2549 45 1 6.0247 0.3548 0.4819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493743583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:40 Heat of formation + Delta-G solvation = -63.126706 kcal Electronic energy + Delta-G solvation = -26690.911313 eV Core-core repulsion = 22674.457589 eV Total energy + Delta-G solvation = -4016.453724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71331 -39.34409 -39.04361 -36.91052 -35.55927 -35.15551 -33.23726 -32.51015 -32.11251 -30.41159 -28.98734 -28.09605 -26.13807 -25.57423 -23.34982 -22.34114 -22.08030 -20.94055 -20.50226 -19.53040 -18.38551 -17.72929 -17.25583 -16.91936 -16.48137 -16.01300 -15.49406 -15.16141 -14.91464 -14.76863 -14.47143 -14.20272 -14.07092 -13.80817 -13.54300 -13.48485 -13.23218 -13.01594 -12.77437 -12.59760 -12.56203 -12.30163 -11.92195 -11.76309 -11.73014 -11.70483 -11.17252 -11.09118 -11.05688 -10.69051 -10.53364 -10.28354 -9.80413 -9.64346 -9.57573 -9.48597 -9.16351 -8.84004 -8.36350 -7.09863 -6.63738 -4.18720 1.07897 2.14398 2.15534 2.51282 2.60284 3.04878 3.06470 3.08934 3.28023 3.57458 3.83400 4.16669 4.52196 4.57904 4.70287 4.74851 4.91662 4.93943 5.04412 5.06623 5.11369 5.26574 5.30589 5.34159 5.48207 5.55163 5.65202 5.69167 5.70430 5.85086 5.88450 6.03127 6.13447 6.22347 6.28709 6.47622 6.49780 6.63320 6.80990 6.93025 6.93310 7.14654 7.25364 7.29664 7.54241 7.65779 7.69894 7.81405 8.31401 8.80828 9.47978 10.52796 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.001748 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.538471 B =16014.102143 C =16628.540773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.130 3.870 4 H 0.114 0.886 5 N -0.716 5.716 6 C 0.561 3.439 7 O -0.554 6.554 8 C -0.282 4.282 9 C 0.040 3.960 10 C -0.199 4.199 11 C -0.035 4.035 12 C -0.243 4.243 13 C 0.167 3.833 14 O -0.162 6.162 15 C -0.394 4.394 16 H 0.097 0.903 17 C 0.042 3.958 18 N -0.852 5.852 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.268 1.268 23 C -0.200 4.200 24 C -0.042 4.042 25 C 0.510 3.490 26 O -0.531 6.531 27 N -0.732 5.732 28 C 0.087 3.913 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.274 0.726 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.404 0.596 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -13.904 20.458 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.020 3.980 4 H 0.132 0.868 5 N -0.370 5.370 6 C 0.354 3.646 7 O -0.435 6.435 8 C -0.303 4.303 9 C 0.020 3.980 10 C -0.200 4.200 11 C -0.053 4.053 12 C -0.262 4.262 13 C 0.111 3.889 14 O -0.063 6.063 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.164 4.164 18 N -0.485 5.485 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.219 4.219 24 C -0.061 4.061 25 C 0.295 3.705 26 O -0.407 6.407 27 N -0.385 5.385 28 C -0.057 4.057 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.238 0.762 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.564 -13.402 19.972 26.688 hybrid contribution -0.663 0.122 -0.057 0.677 sum 10.901 -13.280 19.916 26.303 Atomic orbital electron populations 1.21811 0.93587 1.00996 1.03864 1.21921 0.98286 0.93860 1.02569 1.20786 0.90467 0.95818 0.90881 0.86816 1.45611 1.17476 1.58456 1.15436 1.18340 0.80581 0.77173 0.88537 1.90775 1.51379 1.60363 1.40961 1.22395 1.00055 1.10199 0.97661 1.22269 0.94064 0.86897 0.94747 1.18460 0.96582 1.10338 0.94655 1.20980 0.94322 0.93688 0.96319 1.21095 1.02057 1.08896 0.94146 1.19619 0.93043 0.89567 0.86713 1.83907 1.30701 1.61596 1.30110 1.21429 0.85658 1.40742 0.99097 0.88590 1.25389 1.00385 0.96572 0.94092 1.70002 1.36034 1.40530 1.01891 0.85716 0.79886 0.79338 0.78198 1.19264 1.20091 1.19253 1.20156 0.96205 1.06276 0.99239 1.20902 0.97753 0.95777 0.91630 1.20777 0.90451 0.77456 0.81772 1.90725 1.65338 1.44592 1.40002 1.45734 1.08443 1.60885 1.23398 1.21572 0.79440 1.02561 1.02152 0.93197 0.91860 0.91673 0.91217 0.91053 0.75389 0.85826 0.85886 0.86823 0.85137 0.91552 0.86123 0.86350 0.76174 0.92037 0.90448 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.51 37.16 0.32 -1.06 16 2 C -0.13 -0.95 5.55 -26.73 -0.15 -1.10 16 3 C 0.13 1.18 2.67 -69.08 -0.18 1.00 16 4 H 0.11 1.07 7.58 -51.93 -0.39 0.68 16 5 N -0.72 -8.02 4.90 -56.37 -0.28 -8.30 16 6 C 0.56 7.61 6.30 -13.04 -0.08 7.53 16 7 O -0.55 -8.62 13.36 5.17 0.07 -8.55 16 8 C -0.28 -3.90 9.41 -37.50 -0.35 -4.25 16 9 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 10 C -0.20 -3.42 5.87 -105.03 -0.62 -4.03 16 11 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 12 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16 13 C 0.17 3.87 6.66 -38.89 -0.26 3.61 16 14 O -0.16 -4.43 9.74 0.70 0.01 -4.43 16 15 C -0.39 -10.51 9.48 30.91 0.29 -10.22 16 16 H 0.10 2.34 5.18 -52.48 -0.27 2.07 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 18 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 19 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 24 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 25 C 0.51 4.72 7.22 -10.99 -0.08 4.64 16 26 O -0.53 -6.88 15.84 5.56 0.09 -6.79 16 27 N -0.73 -4.19 5.57 -67.08 -0.37 -4.56 16 28 C 0.09 0.42 10.70 59.85 0.64 1.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 31 H 0.06 0.79 5.64 -51.93 -0.29 0.49 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.34 7.43 -51.93 -0.39 -0.05 16 34 H 0.41 4.42 7.77 -40.82 -0.32 4.10 16 35 H 0.12 1.54 6.06 -52.49 -0.32 1.23 16 36 H 0.12 1.81 7.52 -52.48 -0.39 1.41 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 41 H 0.12 1.71 6.16 -52.49 -0.32 1.39 16 42 H 0.40 1.14 8.19 -40.82 -0.33 0.81 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -32.56 379.70 -7.28 -39.84 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.83 Total: 9.22 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.43 Total: -13.53 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.11 Total: -36.05 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.16 Total: -19.77 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.56 -7.28 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.283 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds