Wall clock time and date at job start Tue Mar 31 2020 17:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46678 * 2 1 4 4 H 1.08996 * 109.47342 * 55.00197 * 3 2 1 5 5 N 1.46502 * 109.47302 * 295.00017 * 3 2 1 6 6 C 1.34769 * 120.00008 * 85.00255 * 5 3 2 7 7 O 1.21723 * 120.00323 * 359.97438 * 6 5 3 8 8 C 1.46260 * 120.00205 * 180.02562 * 6 5 3 9 9 C 1.35019 * 119.99953 * 179.97438 * 8 6 5 10 10 C 1.46960 * 119.99966 * 179.97438 * 9 8 6 11 11 C 1.40026 * 120.10278 * 180.02562 * 10 9 8 12 12 C 1.37594 * 119.89671 * 179.97438 * 11 10 9 13 13 C 1.39178 * 120.10069 * 0.25354 * 12 11 10 14 14 O 1.35579 * 119.89545 * 179.74677 * 13 12 11 15 15 C 1.34785 * 117.00142 * 354.44034 * 14 13 12 16 16 H 1.08005 * 119.99845 * 5.06100 * 15 14 13 17 17 C 1.38717 * 119.99804 * 185.06117 * 15 14 13 18 18 N 1.31502 * 120.00291 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99602 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47470 * 59.99762 * 19 17 15 21 21 H 1.48497 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47053 * 299.99462 * 19 17 15 23 23 C 1.39173 * 120.20483 * 359.49052 * 13 12 11 24 24 C 1.37597 * 120.09959 * 0.50940 * 23 13 12 25 25 C 1.50706 * 109.46947 * 175.00055 * 3 2 1 26 26 O 1.21277 * 119.99780 * 120.00399 * 25 3 2 27 27 N 1.34770 * 119.99990 * 299.99848 * 25 3 2 28 28 C 1.46501 * 120.00072 * 180.02562 * 27 25 3 29 29 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47525 * 299.99675 * 1 2 3 31 31 H 1.08997 * 109.47304 * 60.00263 * 1 2 3 32 32 H 1.08999 * 109.47525 * 240.00325 * 2 1 3 33 33 H 1.08997 * 109.47304 * 119.99737 * 2 1 3 34 34 H 0.97000 * 119.99537 * 264.99977 * 5 3 2 35 35 H 1.07994 * 119.99446 * 359.97438 * 8 6 5 36 36 H 1.08003 * 120.00342 * 359.97438 * 9 8 6 37 37 H 1.07997 * 120.04748 * 359.95180 * 11 10 9 38 38 H 1.08000 * 119.95146 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99987 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.95191 * 180.26076 * 23 13 12 41 41 H 1.08000 * 120.05078 * 179.77151 * 24 23 13 42 42 H 0.96999 * 120.00261 * 0.02562 * 27 25 3 43 43 H 1.08992 * 109.47516 * 59.99651 * 28 27 25 44 44 H 1.09001 * 109.47462 * 180.02562 * 28 27 25 45 45 H 1.09001 * 109.47121 * 299.99686 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 7 1.6522 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3426 2.6318 -0.4310 8 6 0.0478 3.3178 -2.6168 9 6 -1.1719 3.8853 -2.7323 10 6 -1.5608 4.5423 -3.9880 11 6 -2.8250 5.1319 -4.1099 12 6 -3.1845 5.7465 -5.2873 13 6 -2.2957 5.7779 -6.3579 14 8 -2.6562 6.3801 -7.5179 15 6 -3.9253 6.8251 -7.6078 16 1 -4.5793 6.7687 -6.7501 17 6 -4.3913 7.3555 -8.8018 18 7 -3.5949 7.4247 -9.8459 19 14 -6.1499 7.9730 -8.9260 20 1 -6.3622 9.0643 -7.9415 21 1 -6.3980 8.4882 -10.2965 22 1 -7.0875 6.8578 -8.6388 23 6 -1.0362 5.1979 -6.2396 24 6 -0.6680 4.5811 -5.0660 25 6 3.5418 1.4444 0.1238 26 8 4.2214 1.9437 -0.7477 27 7 4.1297 0.8913 1.2031 28 6 5.5897 0.8936 1.3237 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2718 2.1232 -1.9977 35 1 0.7375 3.3464 -3.4473 36 1 -1.8619 3.8563 -1.9018 37 1 -3.5169 5.1040 -3.2811 38 1 -4.1595 6.2011 -5.3825 39 1 -3.9209 7.7953 -10.6809 40 1 -0.3482 5.2283 -7.0716 41 1 0.3082 4.1280 -4.9763 42 1 3.5861 0.4917 1.9000 43 1 5.9527 1.9213 1.3239 44 1 5.8782 0.4058 2.2549 45 1 6.0247 0.3548 0.4819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493743583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:39 Heat of formation + Delta-G solvation = -86.237450 kcal Electronic energy + Delta-G solvation = -26691.913470 eV Core-core repulsion = 22674.457589 eV Total energy + Delta-G solvation = -4017.455881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55628 -40.84444 -40.16225 -38.50970 -36.45391 -35.78716 -34.72872 -34.04446 -33.18392 -31.96732 -29.97827 -29.22746 -27.53367 -26.68399 -24.60520 -23.71387 -23.03156 -22.11030 -21.32024 -20.77254 -19.87161 -18.95935 -18.68263 -18.01430 -17.38665 -16.79304 -16.54540 -16.37371 -16.14758 -15.95277 -15.92896 -15.61623 -15.30333 -15.04496 -14.77353 -14.59944 -14.25694 -14.10876 -14.01137 -13.59594 -13.40175 -13.28696 -13.15426 -13.10812 -12.99482 -12.67485 -12.61558 -12.44104 -12.22098 -12.14094 -11.87399 -11.21480 -11.09195 -11.06543 -10.93424 -10.55516 -10.22074 -10.06388 -9.89428 -8.68216 -8.51734 -6.18172 -0.24155 0.58406 1.14023 1.35961 1.43722 1.47818 1.51982 1.86254 2.15844 2.36313 2.48396 2.86834 3.17931 3.42286 3.55935 3.80352 3.90452 3.95294 4.03343 4.08820 4.28089 4.34353 4.40418 4.46792 4.48882 4.58044 4.63268 4.66689 4.84550 4.94548 4.96717 5.01719 5.02797 5.13577 5.19780 5.25905 5.33637 5.34601 5.41061 5.48752 5.58756 5.63648 5.82125 5.97311 6.10615 6.41196 6.53914 6.92302 7.09905 7.25317 7.69436 8.70134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.001748 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.538471 B =16014.102143 C =16628.540773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.128 3.872 4 H 0.114 0.886 5 N -0.709 5.709 6 C 0.558 3.442 7 O -0.572 6.572 8 C -0.251 4.251 9 C 0.021 3.979 10 C -0.171 4.171 11 C -0.038 4.038 12 C -0.249 4.249 13 C 0.130 3.870 14 O -0.220 6.220 15 C -0.418 4.418 16 H 0.107 0.893 17 C -0.019 4.019 18 N -0.914 5.914 19 Si 1.019 2.981 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.208 4.208 24 C -0.040 4.040 25 C 0.510 3.490 26 O -0.573 6.573 27 N -0.715 5.715 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.275 0.725 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.421 0.579 43 H 0.048 0.952 44 H 0.113 0.887 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 -16.217 24.422 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.020 3.980 4 H 0.132 0.868 5 N -0.361 5.361 6 C 0.350 3.650 7 O -0.454 6.454 8 C -0.272 4.272 9 C 0.001 3.999 10 C -0.172 4.172 11 C -0.056 4.056 12 C -0.268 4.268 13 C 0.078 3.922 14 O -0.125 6.125 15 C -0.494 4.494 16 H 0.124 0.876 17 C -0.217 4.217 18 N -0.551 5.551 19 Si 0.838 3.162 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.181 1.181 23 C -0.228 4.228 24 C -0.057 4.057 25 C 0.296 3.704 26 O -0.453 6.453 27 N -0.367 5.367 28 C -0.061 4.061 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.250 0.750 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.138 0.862 41 H 0.173 0.827 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.544 -15.781 24.050 31.382 hybrid contribution -0.578 0.485 -0.747 1.061 sum 11.966 -15.296 23.304 30.335 Atomic orbital electron populations 1.21754 0.94917 1.01292 1.02049 1.21902 0.96850 0.92834 1.04292 1.20945 0.90652 0.96687 0.89728 0.86834 1.45587 1.16606 1.57493 1.16421 1.18287 0.81159 0.77398 0.88156 1.90781 1.52077 1.61029 1.41507 1.22727 0.99448 1.06894 0.98087 1.22167 0.95125 0.88487 0.94076 1.18800 0.95776 1.07555 0.95095 1.21326 0.95375 0.92762 0.96111 1.21214 1.01667 1.09236 0.94672 1.20179 0.94673 0.90708 0.86663 1.83889 1.31306 1.65022 1.32303 1.21881 0.86208 1.41422 0.99896 0.87625 1.26626 1.05040 0.96649 0.93417 1.70145 1.38489 1.43708 1.02722 0.84638 0.74060 0.79091 0.78414 1.18082 1.19629 1.18074 1.20403 0.95390 1.06394 1.00581 1.21276 0.99323 0.94775 0.90374 1.20772 0.90218 0.77323 0.82103 1.90714 1.66034 1.46792 1.41736 1.45659 1.09183 1.59301 1.22575 1.21718 0.78502 1.02133 1.03732 0.91900 0.92630 0.94430 0.91208 0.87620 0.74994 0.84035 0.85058 0.83471 0.85594 0.91603 0.86154 0.82738 0.74198 0.93311 0.86806 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.51 71.98 0.61 -1.72 16 2 C -0.12 -1.39 5.55 30.59 0.17 -1.22 16 3 C 0.13 1.98 2.67 44.25 0.12 2.10 16 4 H 0.11 1.81 7.58 -2.39 -0.02 1.80 16 5 N -0.71 -13.97 4.90 -450.48 -2.21 -16.17 16 6 C 0.56 13.52 6.30 86.33 0.54 14.06 16 7 O -0.57 -16.32 13.36 -4.42 -0.06 -16.37 16 8 C -0.25 -6.02 9.41 23.62 0.22 -5.80 16 9 C 0.02 0.57 9.45 23.82 0.23 0.79 16 10 C -0.17 -5.43 5.87 -20.13 -0.12 -5.55 16 11 C -0.04 -1.28 9.78 22.55 0.22 -1.06 16 12 C -0.25 -10.50 9.14 22.34 0.20 -10.30 16 13 C 0.13 6.29 6.66 22.72 0.15 6.44 16 14 O -0.22 -12.91 9.74 -20.40 -0.20 -13.11 16 15 C -0.42 -23.72 9.48 67.93 0.64 -23.08 16 16 H 0.11 5.44 5.18 -2.91 -0.02 5.43 16 17 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 18 N -0.91 -54.85 13.67 21.62 0.30 -54.55 16 19 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 C -0.21 -8.59 9.97 22.34 0.22 -8.37 16 24 C -0.04 -1.30 9.40 22.55 0.21 -1.09 16 25 C 0.51 8.13 7.22 87.66 0.63 8.76 16 26 O -0.57 -13.88 15.84 -3.02 -0.05 -13.93 16 27 N -0.71 -5.85 5.57 -484.53 -2.70 -8.55 16 28 C 0.08 0.57 10.70 127.77 1.37 1.94 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.99 7.84 -2.39 -0.02 0.97 16 31 H 0.04 0.82 5.64 -2.39 -0.01 0.81 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.52 7.43 -2.39 -0.02 0.50 16 34 H 0.41 7.82 7.77 -92.71 -0.72 7.10 16 35 H 0.14 2.89 6.06 -2.91 -0.02 2.88 16 36 H 0.13 3.41 7.52 -2.91 -0.02 3.38 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.13 5.34 5.62 -2.91 -0.02 5.32 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.16 3.88 6.16 -2.91 -0.02 3.87 16 42 H 0.42 0.63 8.19 -92.71 -0.76 -0.13 16 43 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.91 379.70 2.57 -74.33 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.43 Total: 29.29 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 5.90 Total: -24.65 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -4.61 Total: -79.27 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.31 Total: -43.41 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -76.91 2.57 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.905 kcal (2) G-P(sol) polarization free energy of solvation -76.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds