Wall clock time and date at job start Tue Mar 31 2020 17:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 H 1.09006 * 109.47546 * 54.99353 * 3 2 1 5 5 N 1.46500 * 109.46917 * 294.99921 * 3 2 1 6 6 C 1.34772 * 120.00548 * 84.99973 * 5 3 2 7 7 O 1.21721 * 119.99792 * 359.97438 * 6 5 3 8 8 C 1.46249 * 120.00593 * 179.97438 * 6 5 3 9 9 C 1.35019 * 120.00541 * 173.47923 * 8 6 5 10 10 C 1.46959 * 119.99829 * 348.75734 * 9 8 6 11 11 C 1.40027 * 120.10189 * 314.55772 * 10 9 8 12 12 C 1.37596 * 119.90095 * 179.69704 * 11 10 9 13 13 C 1.39176 * 120.09917 * 0.59996 * 12 11 10 14 14 O 1.35573 * 119.90121 * 179.69996 * 13 12 11 15 15 C 1.34778 * 117.00489 * 174.17881 * 14 13 12 16 16 H 1.08004 * 119.99753 * 5.06826 * 15 14 13 17 17 C 1.38712 * 120.00269 * 185.06767 * 15 14 13 18 18 N 1.31510 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46842 * 60.00503 * 19 17 15 21 21 H 1.48506 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47386 * 300.00370 * 19 17 15 23 23 C 1.39174 * 120.20314 * 359.67512 * 13 12 11 24 24 C 1.37599 * 120.10227 * 0.02562 * 23 13 12 25 25 C 1.50696 * 109.47178 * 174.99668 * 3 2 1 26 26 O 1.21284 * 119.99836 * 119.99815 * 25 3 2 27 27 N 1.34776 * 120.00392 * 299.99822 * 25 3 2 28 28 C 1.46496 * 120.00368 * 180.02562 * 27 25 3 29 29 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47135 * 60.00098 * 1 2 3 31 31 H 1.09004 * 109.47629 * 300.00594 * 1 2 3 32 32 H 1.09007 * 109.46667 * 119.99657 * 2 1 3 33 33 H 1.08996 * 109.47333 * 239.99333 * 2 1 3 34 34 H 0.97005 * 120.00127 * 265.00092 * 5 3 2 35 35 H 1.08007 * 119.99824 * 353.47909 * 8 6 5 36 36 H 1.08003 * 120.00405 * 168.75759 * 9 8 6 37 37 H 1.08001 * 120.04804 * 0.02562 * 11 10 9 38 38 H 1.07996 * 119.95199 * 180.28046 * 12 11 10 39 39 H 0.96995 * 120.00067 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.95075 * 179.97438 * 23 13 12 41 41 H 1.08005 * 120.05283 * 180.02562 * 24 23 13 42 42 H 0.97000 * 119.99739 * 0.02562 * 27 25 3 43 43 H 1.08991 * 109.47156 * 59.99725 * 28 27 25 44 44 H 1.08993 * 109.47009 * 180.02562 * 28 27 25 45 45 H 1.09007 * 109.46853 * 300.00048 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3424 2.6318 -0.4312 8 6 0.0485 3.3186 -2.6166 9 6 -1.2134 3.7700 -2.7800 10 6 -2.2591 3.3921 -1.8191 11 6 -2.3776 2.0623 -1.3969 12 6 -3.3542 1.7142 -0.4923 13 6 -4.2315 2.6792 -0.0065 14 8 -5.1961 2.3306 0.8801 15 6 -5.9351 3.3284 1.4042 16 1 -5.8017 4.3411 1.0531 17 6 -6.8671 3.0549 2.3945 18 7 -7.0293 1.8220 2.8224 19 14 -7.8908 4.4381 3.1214 20 1 -8.6881 5.0814 2.0463 21 1 -8.8049 3.8874 4.1542 22 1 -6.9930 5.4451 3.7419 23 6 -4.1213 4.0011 -0.4275 24 6 -3.1438 4.3596 -1.3272 25 6 3.5419 1.4442 0.1239 26 8 4.2216 1.9434 -0.7477 27 7 4.1297 0.8911 1.2032 28 6 5.5897 0.8933 1.3240 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 2.2720 2.1230 -1.9979 35 1 0.7725 3.4408 -3.4088 36 1 -1.4544 4.4088 -3.6168 37 1 -1.7000 1.3119 -1.7767 38 1 -3.4434 0.6896 -0.1627 39 1 -7.6807 1.6308 3.5152 40 1 -4.8045 4.7466 -0.0482 41 1 -3.0588 5.3858 -1.6531 42 1 3.5861 0.4915 1.9001 43 1 5.9527 1.9210 1.3241 44 1 5.8780 0.4056 2.2551 45 1 6.0247 0.3545 0.4821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493743584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:45 Heat of formation + Delta-G solvation = -44.406965 kcal Electronic energy + Delta-G solvation = -28300.643765 eV Core-core repulsion = 24285.001790 eV Total energy + Delta-G solvation = -4015.641975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62777 -39.44194 -38.63924 -36.59359 -35.27222 -35.03874 -33.07354 -32.35692 -31.92642 -30.13152 -28.77359 -27.92543 -26.05191 -25.32173 -23.13384 -22.22004 -21.73240 -21.02722 -20.38156 -19.49541 -18.01292 -17.74942 -17.03567 -16.80313 -16.31273 -15.85401 -15.34295 -15.07776 -14.70672 -14.49166 -14.26436 -14.16417 -13.77532 -13.49088 -13.37592 -13.30568 -13.09821 -12.85815 -12.66901 -12.63643 -12.35035 -12.16220 -12.06048 -11.70527 -11.49084 -11.30795 -11.03147 -10.84208 -10.66944 -10.58653 -10.37529 -10.15541 -9.53976 -9.46154 -9.40252 -9.13783 -8.96108 -8.68341 -7.92705 -6.85592 -6.44773 -4.00609 1.27792 2.25583 2.43510 2.66907 2.70570 3.14076 3.16512 3.17922 3.42779 3.64034 3.97981 4.31008 4.70249 4.77150 4.84062 4.91671 5.05466 5.11879 5.13785 5.26724 5.27396 5.36399 5.40214 5.49911 5.64880 5.70617 5.75691 5.82069 5.96056 6.00110 6.15885 6.26664 6.34729 6.42237 6.48987 6.58881 6.62024 6.81659 7.04524 7.05361 7.13360 7.37162 7.46509 7.51724 7.69004 7.80655 7.93467 8.01929 8.54114 9.01063 9.73141 10.73087 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002720 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.852582 B =10292.705216 C =11234.994718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.130 3.870 4 H 0.116 0.884 5 N -0.719 5.719 6 C 0.542 3.458 7 O -0.506 6.506 8 C -0.262 4.262 9 C 0.026 3.974 10 C -0.185 4.185 11 C 0.006 3.994 12 C -0.199 4.199 13 C 0.170 3.830 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.249 4.249 24 C -0.043 4.043 25 C 0.512 3.488 26 O -0.537 6.537 27 N -0.732 5.732 28 C 0.087 3.913 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.406 0.594 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.010 -2.065 -5.951 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.021 3.979 4 H 0.133 0.867 5 N -0.374 5.374 6 C 0.333 3.667 7 O -0.382 6.382 8 C -0.283 4.283 9 C 0.006 3.994 10 C -0.186 4.186 11 C -0.012 4.012 12 C -0.219 4.219 13 C 0.115 3.885 14 O -0.076 6.076 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.268 4.268 24 C -0.061 4.061 25 C 0.298 3.702 26 O -0.413 6.413 27 N -0.384 5.384 28 C -0.057 4.057 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.240 0.760 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.720 -2.072 -5.608 20.606 hybrid contribution -0.169 0.593 0.417 0.744 sum 19.550 -1.479 -5.191 20.282 Atomic orbital electron populations 1.21947 0.93085 1.01283 1.04431 1.21915 0.98630 0.93645 1.02262 1.20781 0.90137 0.95982 0.91024 0.86672 1.45727 1.17698 1.58715 1.15242 1.18434 0.80867 0.77986 0.89443 1.91007 1.49608 1.57236 1.40334 1.22589 0.97916 1.09991 0.97835 1.22337 0.91576 0.90544 0.94903 1.18293 1.00181 0.94345 1.05793 1.20502 0.93367 0.94204 0.93117 1.19973 0.99030 0.98642 1.04213 1.19524 0.87638 0.92403 0.88925 1.83903 1.39087 1.35511 1.49094 1.21331 1.17090 0.88620 1.19531 0.88998 1.25303 0.97435 0.97816 0.95957 1.70010 1.33430 1.18554 1.27572 0.85785 0.79211 0.79605 0.78869 1.19462 1.20278 1.19473 1.20951 1.03792 0.96764 1.05311 1.20733 0.92879 0.97164 0.95324 1.20829 0.90562 0.77196 0.81627 1.90692 1.65473 1.44985 1.40182 1.45756 1.08400 1.60811 1.23474 1.21557 0.79575 1.02436 1.02103 0.93163 0.91404 0.91316 0.91178 0.91547 0.75969 0.86071 0.86052 0.87837 0.86918 0.91942 0.85745 0.87690 0.76017 0.92133 0.90454 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.51 37.16 0.32 -1.59 16 2 C -0.13 -1.22 5.55 -26.73 -0.15 -1.36 16 3 C 0.13 1.41 2.67 -69.09 -0.18 1.23 16 4 H 0.12 1.38 7.58 -51.93 -0.39 0.99 16 5 N -0.72 -8.60 4.90 -56.38 -0.28 -8.87 16 6 C 0.54 7.82 5.54 -13.04 -0.07 7.74 16 7 O -0.51 -9.01 9.63 5.17 0.05 -8.97 16 8 C -0.26 -3.36 9.91 -37.51 -0.37 -3.73 16 9 C 0.03 0.36 9.79 -37.20 -0.36 0.00 16 10 C -0.19 -3.33 4.46 -105.03 -0.47 -3.80 16 11 C 0.01 0.12 6.48 -39.15 -0.25 -0.13 16 12 C -0.20 -4.40 9.97 -39.47 -0.39 -4.79 16 13 C 0.17 4.23 6.66 -38.89 -0.26 3.97 16 14 O -0.17 -5.03 9.74 0.74 0.01 -5.02 16 15 C -0.39 -11.02 9.48 30.91 0.29 -10.72 16 16 H 0.09 2.41 5.18 -52.48 -0.27 2.14 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 19 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.25 -5.60 9.14 -39.47 -0.36 -5.97 16 24 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 25 C 0.51 5.40 7.22 -10.99 -0.08 5.32 16 26 O -0.54 -7.31 15.84 5.55 0.09 -7.23 16 27 N -0.73 -5.36 5.57 -67.08 -0.37 -5.73 16 28 C 0.09 0.52 10.70 59.84 0.64 1.17 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.97 3.50 -51.93 -0.18 0.79 16 31 H 0.07 1.01 7.84 -51.93 -0.41 0.61 16 32 H 0.07 0.52 7.43 -51.92 -0.39 0.13 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.40 4.41 7.77 -40.82 -0.32 4.09 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.10 1.77 5.34 -52.49 -0.28 1.49 16 38 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 2.79 5.62 -52.48 -0.29 2.49 16 41 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.41 2.00 8.19 -40.82 -0.33 1.66 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -34.65 371.30 -7.17 -41.81 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.81 Total: 10.26 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.18 Total: -12.88 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.11 Total: -39.21 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.14 Total: -21.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.65 -7.17 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds