Wall clock time and date at job start Tue Mar 31 2020 17:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 H 1.09006 * 109.47546 * 54.99353 * 3 2 1 5 5 N 1.46500 * 109.46917 * 294.99921 * 3 2 1 6 6 C 1.34772 * 120.00548 * 84.99973 * 5 3 2 7 7 O 1.21721 * 119.99792 * 359.97438 * 6 5 3 8 8 C 1.46249 * 120.00593 * 179.97438 * 6 5 3 9 9 C 1.35019 * 120.00541 * 173.47923 * 8 6 5 10 10 C 1.46959 * 119.99829 * 348.75734 * 9 8 6 11 11 C 1.40027 * 120.10189 * 314.55772 * 10 9 8 12 12 C 1.37596 * 119.90095 * 179.69704 * 11 10 9 13 13 C 1.39176 * 120.09917 * 0.59996 * 12 11 10 14 14 O 1.35573 * 119.90121 * 179.69996 * 13 12 11 15 15 C 1.34778 * 117.00489 * 174.17881 * 14 13 12 16 16 H 1.08004 * 119.99753 * 5.06826 * 15 14 13 17 17 C 1.38712 * 120.00269 * 185.06767 * 15 14 13 18 18 N 1.31510 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46842 * 60.00503 * 19 17 15 21 21 H 1.48506 * 109.47114 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47386 * 300.00370 * 19 17 15 23 23 C 1.39174 * 120.20314 * 359.67512 * 13 12 11 24 24 C 1.37599 * 120.10227 * 0.02562 * 23 13 12 25 25 C 1.50696 * 109.47178 * 174.99668 * 3 2 1 26 26 O 1.21284 * 119.99836 * 119.99815 * 25 3 2 27 27 N 1.34776 * 120.00392 * 299.99822 * 25 3 2 28 28 C 1.46496 * 120.00368 * 180.02562 * 27 25 3 29 29 H 1.09000 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47135 * 60.00098 * 1 2 3 31 31 H 1.09004 * 109.47629 * 300.00594 * 1 2 3 32 32 H 1.09007 * 109.46667 * 119.99657 * 2 1 3 33 33 H 1.08996 * 109.47333 * 239.99333 * 2 1 3 34 34 H 0.97005 * 120.00127 * 265.00092 * 5 3 2 35 35 H 1.08007 * 119.99824 * 353.47909 * 8 6 5 36 36 H 1.08003 * 120.00405 * 168.75759 * 9 8 6 37 37 H 1.08001 * 120.04804 * 0.02562 * 11 10 9 38 38 H 1.07996 * 119.95199 * 180.28046 * 12 11 10 39 39 H 0.96995 * 120.00067 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.95075 * 179.97438 * 23 13 12 41 41 H 1.08005 * 120.05283 * 180.02562 * 24 23 13 42 42 H 0.97000 * 119.99739 * 0.02562 * 27 25 3 43 43 H 1.08991 * 109.47156 * 59.99725 * 28 27 25 44 44 H 1.08993 * 109.47009 * 180.02562 * 28 27 25 45 45 H 1.09007 * 109.46853 * 300.00048 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3424 2.6318 -0.4312 8 6 0.0485 3.3186 -2.6166 9 6 -1.2134 3.7700 -2.7800 10 6 -2.2591 3.3921 -1.8191 11 6 -2.3776 2.0623 -1.3969 12 6 -3.3542 1.7142 -0.4923 13 6 -4.2315 2.6792 -0.0065 14 8 -5.1961 2.3306 0.8801 15 6 -5.9351 3.3284 1.4042 16 1 -5.8017 4.3411 1.0531 17 6 -6.8671 3.0549 2.3945 18 7 -7.0293 1.8220 2.8224 19 14 -7.8908 4.4381 3.1214 20 1 -8.6881 5.0814 2.0463 21 1 -8.8049 3.8874 4.1542 22 1 -6.9930 5.4451 3.7419 23 6 -4.1213 4.0011 -0.4275 24 6 -3.1438 4.3596 -1.3272 25 6 3.5419 1.4442 0.1239 26 8 4.2216 1.9434 -0.7477 27 7 4.1297 0.8911 1.2032 28 6 5.5897 0.8933 1.3240 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 2.2720 2.1230 -1.9979 35 1 0.7725 3.4408 -3.4088 36 1 -1.4544 4.4088 -3.6168 37 1 -1.7000 1.3119 -1.7767 38 1 -3.4434 0.6896 -0.1627 39 1 -7.6807 1.6308 3.5152 40 1 -4.8045 4.7466 -0.0482 41 1 -3.0588 5.3858 -1.6531 42 1 3.5861 0.4915 1.9001 43 1 5.9527 1.9210 1.3241 44 1 5.8780 0.4056 2.2551 45 1 6.0247 0.3545 0.4821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493743584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:44 Heat of formation + Delta-G solvation = -70.132445 kcal Electronic energy + Delta-G solvation = -28301.759306 eV Core-core repulsion = 24285.001790 eV Total energy + Delta-G solvation = -4016.757516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62295 -40.78284 -40.12089 -38.20191 -36.37434 -35.78252 -34.56310 -33.98365 -33.16514 -31.79176 -29.84640 -29.22700 -27.44051 -26.70136 -24.37918 -23.56031 -23.09955 -22.30779 -21.29585 -20.68036 -19.78133 -19.04710 -18.42646 -18.00159 -17.35715 -16.80459 -16.46718 -16.27805 -16.18831 -15.96429 -15.63398 -15.50748 -15.14361 -14.98952 -14.64091 -14.43685 -14.30675 -14.04809 -14.00163 -13.71589 -13.54957 -13.35227 -13.12591 -13.01774 -12.98758 -12.67231 -12.47241 -12.26991 -12.18231 -12.12156 -11.80100 -11.18956 -11.05922 -10.93336 -10.61827 -10.34594 -10.22428 -10.00949 -9.55007 -8.53343 -8.46270 -6.13156 0.03233 0.76014 1.13855 1.34297 1.42263 1.47341 1.50860 1.89346 2.18407 2.48535 2.54471 2.89281 3.24087 3.55288 3.56195 3.88608 4.00163 4.05319 4.06969 4.17226 4.21421 4.36599 4.45501 4.55101 4.60603 4.62293 4.64014 4.80239 4.83348 4.94112 5.01003 5.06870 5.11946 5.13561 5.28100 5.29406 5.33449 5.46365 5.47997 5.53487 5.71721 5.76315 5.87377 6.05095 6.28584 6.38388 6.67127 6.97843 7.06457 7.43389 7.80547 8.76513 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.002720 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.852582 B =10292.705216 C =11234.994718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.129 3.871 4 H 0.102 0.898 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.547 6.547 8 C -0.233 4.233 9 C 0.007 3.993 10 C -0.157 4.157 11 C 0.013 3.987 12 C -0.211 4.211 13 C 0.126 3.874 14 O -0.230 6.230 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.258 4.258 24 C -0.050 4.050 25 C 0.515 3.485 26 O -0.570 6.570 27 N -0.719 5.719 28 C 0.083 3.917 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.418 0.582 43 H 0.050 0.950 44 H 0.110 0.890 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.162 -0.750 -7.884 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.020 3.980 4 H 0.119 0.881 5 N -0.361 5.361 6 C 0.323 3.677 7 O -0.426 6.426 8 C -0.254 4.254 9 C -0.012 4.012 10 C -0.158 4.158 11 C -0.005 4.005 12 C -0.230 4.230 13 C 0.075 3.925 14 O -0.137 6.137 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.180 1.180 21 H -0.195 1.195 22 H -0.184 1.184 23 C -0.277 4.277 24 C -0.068 4.068 25 C 0.300 3.700 26 O -0.449 6.449 27 N -0.371 5.371 28 C -0.060 4.060 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.955 -0.772 -7.572 24.184 hybrid contribution -0.645 0.133 0.773 1.015 sum 22.310 -0.638 -6.799 23.332 Atomic orbital electron populations 1.21856 0.95394 1.00952 1.02178 1.21858 0.96211 0.93231 1.04164 1.20815 0.90693 0.96342 0.90113 0.88073 1.45658 1.17023 1.57580 1.15860 1.18910 0.81144 0.77914 0.89741 1.91022 1.50844 1.58940 1.41835 1.23017 0.98456 1.06422 0.97480 1.22549 0.90662 0.92489 0.95488 1.18843 0.99657 0.93333 1.03978 1.20730 0.92194 0.95616 0.91993 1.20130 0.99667 0.97966 1.05284 1.20021 0.88442 0.94295 0.89694 1.83871 1.41487 1.36470 1.51827 1.21807 1.17725 0.89158 1.20313 0.88209 1.26610 0.98558 1.00809 0.96042 1.70162 1.35288 1.21207 1.29206 0.84655 0.77375 0.75978 0.78233 1.17967 1.19456 1.18365 1.21070 1.04870 0.95606 1.06193 1.21134 0.91992 0.99362 0.94270 1.20676 0.90019 0.77233 0.82050 1.90680 1.65895 1.46761 1.41567 1.45727 1.09339 1.59343 1.22651 1.21724 0.78317 1.02215 1.03744 0.92526 0.93010 0.94162 0.88445 0.90451 0.74956 0.81709 0.81634 0.85784 0.87934 0.91802 0.86504 0.83890 0.74499 0.93129 0.87113 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.51 71.98 0.61 -3.06 16 2 C -0.12 -2.02 5.55 30.59 0.17 -1.85 16 3 C 0.13 2.58 2.67 44.24 0.12 2.70 16 4 H 0.10 2.37 7.58 -2.38 -0.02 2.35 16 5 N -0.71 -15.09 4.90 -450.51 -2.21 -17.30 16 6 C 0.53 13.92 5.54 86.33 0.48 14.40 16 7 O -0.55 -18.99 9.63 -4.42 -0.04 -19.03 16 8 C -0.23 -4.82 9.91 23.61 0.23 -4.59 16 9 C 0.01 0.17 9.79 23.82 0.23 0.40 16 10 C -0.16 -5.31 4.46 -20.13 -0.09 -5.40 16 11 C 0.01 0.48 6.48 22.55 0.15 0.63 16 12 C -0.21 -9.84 9.97 22.34 0.22 -9.62 16 13 C 0.13 6.71 6.66 22.72 0.15 6.86 16 14 O -0.23 -14.50 9.74 -20.26 -0.20 -14.70 16 15 C -0.41 -25.01 9.48 67.93 0.64 -24.37 16 16 H 0.10 5.56 5.18 -2.91 -0.02 5.54 16 17 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 18 N -0.92 -57.84 13.67 21.62 0.30 -57.54 16 19 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 C -0.26 -12.01 9.14 22.34 0.20 -11.81 16 24 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 25 C 0.51 9.75 7.22 87.66 0.63 10.38 16 26 O -0.57 -14.36 15.84 -3.04 -0.05 -14.41 16 27 N -0.72 -8.72 5.57 -484.54 -2.70 -11.42 16 28 C 0.08 0.79 10.70 127.77 1.37 2.16 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.44 3.50 -2.38 -0.01 1.43 16 31 H 0.04 1.23 7.84 -2.38 -0.02 1.21 16 32 H 0.10 1.17 7.43 -2.38 -0.02 1.16 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.41 7.63 7.77 -92.70 -0.72 6.91 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.12 4.11 5.34 -2.91 -0.02 4.10 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 39 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.12 5.48 5.62 -2.91 -0.02 5.47 16 41 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.42 2.96 8.19 -92.71 -0.76 2.20 16 43 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -83.72 371.30 2.51 -81.21 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.43 Total: 32.86 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 5.81 Total: -25.64 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -4.61 Total: -86.27 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.29 Total: -48.14 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -83.72 2.51 -81.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.073 kcal (2) G-P(sol) polarization free energy of solvation -83.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds