Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47380 * 2 1 4 4 C 1.53007 * 109.47328 * 239.99896 * 2 1 3 5 5 O 1.45202 * 109.47147 * 119.99924 * 2 1 3 6 6 C 1.34635 * 116.99936 * 60.00250 * 5 2 1 7 7 O 1.21510 * 120.00041 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00251 * 180.02562 * 6 5 2 9 9 C 1.46615 * 126.54126 * 0.02562 * 8 6 5 10 10 C 1.50832 * 107.72178 * 179.97438 * 9 8 6 11 11 C 1.38638 * 131.01351 * 180.02562 * 10 9 8 12 12 C 1.37826 * 120.30584 * 179.71958 * 11 10 9 13 13 C 1.39666 * 119.80178 * 0.25604 * 12 11 10 14 14 C 1.47734 * 120.17789 * 179.97438 * 13 12 11 15 15 O 1.21590 * 119.99934 * 179.97438 * 14 13 12 16 16 N 1.34781 * 119.99522 * 0.02562 * 14 13 12 17 17 C 1.36875 * 119.99368 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00247 * 359.97438 * 17 16 14 19 19 C 1.39051 * 119.99857 * 179.97438 * 17 16 14 20 20 N 1.31372 * 119.99599 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00211 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47374 * 120.00115 * 21 19 17 24 24 H 1.48506 * 109.46957 * 240.00222 * 21 19 17 25 25 C 1.39544 * 119.64433 * 0.02562 * 13 12 11 26 26 C 1.38159 * 119.98332 * 359.97438 * 25 13 12 27 27 C 1.46625 * 126.54783 * 180.54897 * 8 6 5 28 28 H 1.09000 * 109.46928 * 300.00058 * 1 2 3 29 29 H 1.09001 * 109.46900 * 59.99853 * 1 2 3 30 30 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46994 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46699 * 299.99951 * 3 2 1 33 33 H 1.08995 * 109.46707 * 59.99894 * 3 2 1 34 34 H 1.08999 * 109.46936 * 300.00344 * 4 2 1 35 35 H 1.09001 * 109.46469 * 59.99990 * 4 2 1 36 36 H 1.09002 * 109.47164 * 180.02562 * 4 2 1 37 37 H 1.09010 * 109.80802 * 60.42842 * 9 8 6 38 38 H 1.08996 * 109.81320 * 299.54071 * 9 8 6 39 39 H 1.08002 * 119.85137 * 0.02562 * 11 10 9 40 40 H 1.08000 * 120.10072 * 180.27514 * 12 11 10 41 41 H 0.96996 * 120.00472 * 359.97438 * 16 14 13 42 42 H 0.96995 * 119.99477 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.00712 * 179.97438 * 25 13 12 44 44 H 1.09005 * 110.31555 * 60.22386 * 27 8 6 45 45 H 1.09002 * 109.30251 * 299.33640 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 2.9104 -2.1630 3.5063 10 6 3.1121 -3.2900 4.4881 11 6 3.8203 -3.3435 5.6788 12 6 3.8531 -4.5071 6.4168 13 6 3.1739 -5.6385 5.9594 14 6 3.2039 -6.8903 6.7435 15 8 2.6111 -7.8732 6.3426 16 7 3.8877 -6.9422 7.9039 17 6 3.9160 -8.1021 8.6300 18 1 3.3901 -8.9754 8.2735 19 6 4.6219 -8.1560 9.8268 20 7 5.2612 -7.0935 10.2607 21 14 4.6600 -9.7386 10.8183 22 1 3.8664 -10.7804 10.1183 23 1 6.0643 -10.1996 10.9612 24 1 4.0799 -9.4942 12.1633 25 6 2.4676 -5.5806 4.7573 26 6 2.4426 -4.4081 4.0270 27 6 1.7704 -4.0690 2.7203 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 2.4158 -1.3266 4.0005 38 1 3.8734 -1.8415 3.1097 39 1 4.3446 -2.4680 6.0322 40 1 4.4021 -4.5438 7.3461 41 1 4.3604 -6.1580 8.2239 42 1 5.7532 -7.1310 11.0958 43 1 1.9406 -6.4522 4.3980 44 1 2.1519 -4.7157 1.9301 45 1 0.6921 -4.1969 2.8151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495343311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -81.071484 kcal Electronic energy + Delta-G solvation = -27601.970285 eV Core-core repulsion = 23584.738417 eV Total energy + Delta-G solvation = -4017.231868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18536 -40.08468 -38.40284 -37.19791 -35.79263 -34.27623 -34.17038 -31.73210 -31.38016 -30.77159 -27.92055 -27.69942 -27.67287 -26.34984 -24.70271 -22.26804 -22.14971 -21.35140 -19.73258 -19.31545 -18.26429 -18.03979 -16.89532 -16.84496 -16.49126 -15.74608 -15.28373 -15.19187 -14.81530 -14.41765 -14.39080 -14.08425 -13.92468 -13.64645 -13.61889 -13.44906 -13.11808 -12.81803 -12.72701 -12.53411 -12.48224 -12.20619 -12.18560 -11.98882 -11.73157 -11.64282 -11.60079 -11.52598 -11.20826 -10.73409 -10.65106 -10.43450 -10.36061 -10.30482 -9.71727 -9.24569 -8.65051 -8.59549 -8.30198 -8.14412 -6.63810 -3.95948 1.14778 1.52750 1.76000 2.59905 3.07125 3.18282 3.25589 3.48175 3.58442 4.01463 4.23600 4.37140 4.37388 4.40375 4.44431 4.58447 4.84515 5.04432 5.14817 5.19828 5.20875 5.22406 5.28164 5.31004 5.37143 5.43501 5.43704 5.48729 5.54870 5.57411 5.66021 5.69854 5.78087 5.88866 5.99123 6.03040 6.07093 6.15694 6.23100 6.57631 6.59056 6.75837 7.06320 7.23121 7.36354 7.88744 8.07928 8.42289 8.98665 9.33636 9.89315 10.52918 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039161 B = 0.001992 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.819132 B =14053.878835 C =14566.923970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.359 6.359 6 C 0.678 3.322 7 O -0.563 6.563 8 N -0.601 5.601 9 C 0.155 3.845 10 C -0.116 4.116 11 C -0.094 4.094 12 C -0.098 4.098 13 C -0.082 4.082 14 C 0.463 3.537 15 O -0.596 6.596 16 N -0.540 5.540 17 C -0.293 4.293 18 H 0.110 0.890 19 C 0.023 3.977 20 N -0.887 5.887 21 Si 0.935 3.065 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.051 4.051 26 C -0.116 4.116 27 C 0.176 3.824 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.394 0.606 42 H 0.276 0.724 43 H 0.136 0.864 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 18.059 -16.042 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.274 6.274 6 C 0.433 3.567 7 O -0.452 6.452 8 N -0.342 5.342 9 C 0.032 3.968 10 C -0.117 4.117 11 C -0.112 4.112 12 C -0.117 4.117 13 C -0.086 4.086 14 C 0.251 3.749 15 O -0.483 6.483 16 N -0.174 5.174 17 C -0.423 4.423 18 H 0.128 0.872 19 C -0.180 4.180 20 N -0.527 5.527 21 Si 0.761 3.239 22 H -0.189 1.189 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.070 4.070 26 C -0.117 4.117 27 C 0.054 3.946 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.848 17.376 -16.492 24.263 hybrid contribution 0.449 -0.158 0.820 0.949 sum -3.400 17.217 -15.672 23.528 Atomic orbital electron populations 1.22524 0.93911 1.05151 1.02531 1.22114 0.94461 0.91533 0.82029 1.21858 1.02314 0.92396 1.03159 1.22526 1.01635 1.03537 0.96418 1.86313 1.71448 1.23170 1.46487 1.17114 0.78677 0.80425 0.80437 1.90918 1.41247 1.70549 1.42520 1.46405 1.53666 1.12654 1.21431 1.20245 0.95218 0.95196 0.86145 1.20192 1.00281 0.95005 0.96232 1.20285 0.99346 0.98338 0.93274 1.21377 0.98500 0.92031 0.99789 1.20259 0.97926 0.94914 0.95514 1.17646 0.86019 0.87668 0.83579 1.90608 1.49549 1.36820 1.71318 1.41911 1.43198 1.14024 1.18233 1.19919 1.29347 0.91445 1.01589 0.87249 1.25414 0.95993 0.99202 0.97430 1.69594 1.31618 1.28974 1.22500 0.85702 0.78244 0.80822 0.79083 1.18917 1.20478 1.20471 1.20427 0.97514 0.96304 0.92805 1.20001 1.00632 0.94779 0.96279 1.20060 1.00392 0.79667 0.94431 0.92099 0.91086 0.89344 0.91407 0.90091 0.91402 0.89353 0.91078 0.92103 0.89892 0.89946 0.85574 0.84787 0.77098 0.91384 0.84596 0.89578 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 2 C 0.14 1.21 1.13 -90.61 -0.10 1.11 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.61 8.37 37.16 0.31 -1.29 16 5 O -0.36 -4.08 9.53 -40.31 -0.38 -4.46 16 6 C 0.68 8.86 7.95 54.05 0.43 9.29 16 7 O -0.56 -8.30 12.25 -19.28 -0.24 -8.53 16 8 N -0.60 -7.55 3.34 -181.91 -0.61 -8.16 16 9 C 0.15 1.71 6.93 -5.07 -0.04 1.67 16 10 C -0.12 -1.52 6.22 -104.41 -0.65 -2.17 16 11 C -0.09 -1.24 10.03 -39.58 -0.40 -1.64 16 12 C -0.10 -1.57 9.54 -39.20 -0.37 -1.94 16 13 C -0.08 -1.58 5.87 -105.00 -0.62 -2.19 16 14 C 0.46 11.14 7.72 -12.38 -0.10 11.04 16 15 O -0.60 -16.32 15.92 5.29 0.08 -16.23 16 16 N -0.54 -13.47 5.23 -11.87 -0.06 -13.53 16 17 C -0.29 -7.92 9.68 -15.00 -0.15 -8.07 16 18 H 0.11 3.09 7.15 -52.49 -0.38 2.72 16 19 C 0.02 0.60 5.50 -17.45 -0.10 0.50 16 20 N -0.89 -22.93 13.05 55.50 0.72 -22.21 16 21 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.05 -0.86 9.60 -39.12 -0.38 -1.24 16 26 C -0.12 -1.67 6.21 -104.60 -0.65 -2.32 16 27 C 0.18 2.24 6.90 -5.07 -0.04 2.21 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 2.11 6.41 -52.49 -0.34 1.77 16 41 H 0.39 9.21 5.93 -40.82 -0.24 8.97 16 42 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.14 2.36 7.65 -52.48 -0.40 1.95 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -31.15 373.91 -8.23 -39.38 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.17 Total: 9.90 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.19 Total: 3.13 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.06 Total: -43.89 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.54 Total: -29.23 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.15 -8.23 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495343311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.691 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds