Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47380 * 2 1 4 4 C 1.53007 * 109.47328 * 239.99896 * 2 1 3 5 5 O 1.45202 * 109.47147 * 119.99924 * 2 1 3 6 6 C 1.34635 * 116.99936 * 60.00250 * 5 2 1 7 7 O 1.21510 * 120.00041 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00251 * 180.02562 * 6 5 2 9 9 C 1.46615 * 126.54126 * 0.02562 * 8 6 5 10 10 C 1.50832 * 107.72178 * 179.97438 * 9 8 6 11 11 C 1.38638 * 131.01351 * 180.02562 * 10 9 8 12 12 C 1.37826 * 120.30584 * 179.71958 * 11 10 9 13 13 C 1.39666 * 119.80178 * 0.25604 * 12 11 10 14 14 C 1.47734 * 120.17789 * 179.97438 * 13 12 11 15 15 O 1.21590 * 119.99934 * 179.97438 * 14 13 12 16 16 N 1.34781 * 119.99522 * 0.02562 * 14 13 12 17 17 C 1.36875 * 119.99368 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00247 * 359.97438 * 17 16 14 19 19 C 1.39051 * 119.99857 * 179.97438 * 17 16 14 20 20 N 1.31372 * 119.99599 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00211 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47374 * 120.00115 * 21 19 17 24 24 H 1.48506 * 109.46957 * 240.00222 * 21 19 17 25 25 C 1.39544 * 119.64433 * 0.02562 * 13 12 11 26 26 C 1.38159 * 119.98332 * 359.97438 * 25 13 12 27 27 C 1.46625 * 126.54783 * 180.54897 * 8 6 5 28 28 H 1.09000 * 109.46928 * 300.00058 * 1 2 3 29 29 H 1.09001 * 109.46900 * 59.99853 * 1 2 3 30 30 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46994 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46699 * 299.99951 * 3 2 1 33 33 H 1.08995 * 109.46707 * 59.99894 * 3 2 1 34 34 H 1.08999 * 109.46936 * 300.00344 * 4 2 1 35 35 H 1.09001 * 109.46469 * 59.99990 * 4 2 1 36 36 H 1.09002 * 109.47164 * 180.02562 * 4 2 1 37 37 H 1.09010 * 109.80802 * 60.42842 * 9 8 6 38 38 H 1.08996 * 109.81320 * 299.54071 * 9 8 6 39 39 H 1.08002 * 119.85137 * 0.02562 * 11 10 9 40 40 H 1.08000 * 120.10072 * 180.27514 * 12 11 10 41 41 H 0.96996 * 120.00472 * 359.97438 * 16 14 13 42 42 H 0.96995 * 119.99477 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.00712 * 179.97438 * 25 13 12 44 44 H 1.09005 * 110.31555 * 60.22386 * 27 8 6 45 45 H 1.09002 * 109.30251 * 299.33640 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 2.9104 -2.1630 3.5063 10 6 3.1121 -3.2900 4.4881 11 6 3.8203 -3.3435 5.6788 12 6 3.8531 -4.5071 6.4168 13 6 3.1739 -5.6385 5.9594 14 6 3.2039 -6.8903 6.7435 15 8 2.6111 -7.8732 6.3426 16 7 3.8877 -6.9422 7.9039 17 6 3.9160 -8.1021 8.6300 18 1 3.3901 -8.9754 8.2735 19 6 4.6219 -8.1560 9.8268 20 7 5.2612 -7.0935 10.2607 21 14 4.6600 -9.7386 10.8183 22 1 3.8664 -10.7804 10.1183 23 1 6.0643 -10.1996 10.9612 24 1 4.0799 -9.4942 12.1633 25 6 2.4676 -5.5806 4.7573 26 6 2.4426 -4.4081 4.0270 27 6 1.7704 -4.0690 2.7203 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 2.4158 -1.3266 4.0005 38 1 3.8734 -1.8415 3.1097 39 1 4.3446 -2.4680 6.0322 40 1 4.4021 -4.5438 7.3461 41 1 4.3604 -6.1580 8.2239 42 1 5.7532 -7.1310 11.0958 43 1 1.9406 -6.4522 4.3980 44 1 2.1519 -4.7157 1.9301 45 1 0.6921 -4.1969 2.8151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495343311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -99.994285 kcal Electronic energy + Delta-G solvation = -27602.790839 eV Core-core repulsion = 23584.738417 eV Total energy + Delta-G solvation = -4018.052422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16697 -41.24580 -40.03272 -38.27139 -36.96025 -36.14330 -35.03634 -33.51953 -32.61536 -32.11081 -29.01377 -28.34077 -28.25433 -27.84177 -26.26173 -23.60015 -23.23907 -22.42397 -20.95717 -20.60131 -20.13881 -19.03225 -18.11776 -17.78930 -17.77517 -16.99975 -16.69993 -16.15444 -16.14163 -15.81764 -15.52577 -15.44739 -15.16498 -15.13393 -14.84023 -14.48913 -14.11441 -14.04201 -13.74883 -13.57041 -13.35794 -13.32752 -13.05082 -12.91097 -12.90872 -12.84889 -12.75591 -12.45453 -12.43852 -12.33052 -12.12463 -11.91825 -11.61859 -11.40183 -11.19801 -10.56508 -10.36823 -10.13366 -9.89136 -9.43513 -8.57753 -6.02019 -0.16757 0.29266 0.84993 1.37548 1.41682 1.56064 1.62762 1.97271 2.25416 2.73001 2.74281 2.93775 3.26559 3.26804 3.35638 3.76665 3.81872 3.92123 3.96737 4.16052 4.26851 4.33097 4.36745 4.41564 4.48578 4.51701 4.56425 4.64601 4.71364 4.78031 4.79799 4.86647 4.91351 4.91438 4.97150 5.16522 5.24451 5.30764 5.33903 5.34883 5.37414 5.41668 5.44214 5.79951 5.92952 6.26709 6.48070 7.00804 7.12604 7.40986 7.97899 8.59518 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039161 B = 0.001992 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.819132 B =14053.878835 C =14566.923970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.359 6.359 6 C 0.677 3.323 7 O -0.585 6.585 8 N -0.605 5.605 9 C 0.156 3.844 10 C -0.094 4.094 11 C -0.080 4.080 12 C -0.094 4.094 13 C -0.115 4.115 14 C 0.462 3.538 15 O -0.639 6.639 16 N -0.548 5.548 17 C -0.337 4.337 18 H 0.083 0.917 19 C -0.008 4.008 20 N -0.907 5.907 21 Si 0.999 3.001 22 H -0.273 1.273 23 H -0.267 1.267 24 H -0.267 1.267 25 C -0.057 4.057 26 C -0.116 4.116 27 C 0.178 3.822 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.170 0.830 40 H 0.136 0.864 41 H 0.400 0.600 42 H 0.284 0.716 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 21.490 -16.755 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.433 3.567 7 O -0.476 6.476 8 N -0.345 5.345 9 C 0.034 3.966 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.113 4.113 13 C -0.118 4.118 14 C 0.252 3.748 15 O -0.529 6.529 16 N -0.183 5.183 17 C -0.467 4.467 18 H 0.101 0.899 19 C -0.210 4.210 20 N -0.546 5.546 21 Si 0.821 3.179 22 H -0.198 1.198 23 H -0.192 1.192 24 H -0.192 1.192 25 C -0.076 4.076 26 C -0.117 4.117 27 C 0.056 3.944 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.188 0.812 40 H 0.153 0.847 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.041 20.861 -17.203 27.210 hybrid contribution 0.140 -1.040 0.829 1.337 sum -2.901 19.821 -16.374 25.873 Atomic orbital electron populations 1.22487 0.93946 1.03605 1.03761 1.22505 0.94659 0.92805 0.81267 1.21884 1.02542 0.90269 1.04449 1.22488 1.01736 1.02121 0.97450 1.86326 1.71345 1.22033 1.47608 1.17213 0.78415 0.80948 0.80170 1.90921 1.42189 1.71174 1.43313 1.46431 1.53918 1.12374 1.21825 1.20418 0.96425 0.94489 0.85277 1.20587 0.97859 0.95067 0.95959 1.20616 0.98465 0.98347 0.92383 1.21443 0.97702 0.92011 1.00144 1.19901 1.01543 0.93940 0.96458 1.18470 0.84258 0.88870 0.83249 1.90553 1.50944 1.39074 1.72304 1.41871 1.44003 1.13786 1.18638 1.19822 1.31637 0.91794 1.03397 0.89899 1.26170 0.94933 1.02315 0.97536 1.69633 1.31747 1.30222 1.23038 0.84791 0.78557 0.76848 0.77669 1.19770 1.19225 1.19220 1.20319 0.97512 0.97124 0.92692 1.20015 1.00784 0.94179 0.96718 1.19984 1.00396 0.80364 0.93615 0.91845 0.88911 0.92175 0.91053 0.87875 0.91054 0.92180 0.88905 0.91842 0.87552 0.87587 0.81216 0.84662 0.76446 0.90677 0.86053 0.89298 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 2 C 0.12 1.92 1.13 -10.79 -0.01 1.90 16 3 C -0.13 -1.20 8.85 71.98 0.64 -0.56 16 4 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 5 O -0.36 -7.24 9.53 -55.44 -0.53 -7.76 16 6 C 0.68 16.52 7.95 129.79 1.03 17.56 16 7 O -0.59 -16.96 12.25 19.81 0.24 -16.71 16 8 N -0.60 -13.76 3.34 -959.84 -3.20 -16.96 16 9 C 0.16 2.79 6.93 85.65 0.59 3.39 16 10 C -0.09 -2.14 6.22 -19.73 -0.12 -2.27 16 11 C -0.08 -1.83 10.03 22.27 0.22 -1.61 16 12 C -0.09 -2.92 9.54 22.52 0.21 -2.71 16 13 C -0.12 -4.52 5.87 -20.11 -0.12 -4.64 16 14 C 0.46 23.50 7.72 86.75 0.67 24.17 16 15 O -0.64 -37.36 15.92 -4.00 -0.06 -37.42 16 16 N -0.55 -28.71 5.23 -309.72 -1.62 -30.33 16 17 C -0.34 -19.13 9.68 84.10 0.81 -18.31 16 18 H 0.08 5.03 7.15 -2.91 -0.02 5.01 16 19 C -0.01 -0.41 5.50 84.96 0.47 0.05 16 20 N -0.91 -47.24 13.05 21.68 0.28 -46.95 16 21 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 C -0.06 -1.98 9.60 22.57 0.22 -1.76 16 26 C -0.12 -3.20 6.21 -19.85 -0.12 -3.32 16 27 C 0.18 4.34 6.90 85.64 0.59 4.93 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.31 5.88 -2.39 -0.01 1.30 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 1.31 5.88 -2.39 -0.01 1.29 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.14 4.17 6.41 -2.91 -0.02 4.15 16 41 H 0.40 19.39 5.93 -92.71 -0.55 18.84 16 42 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 43 H 0.12 4.50 7.65 -2.91 -0.02 4.48 16 44 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.59 373.91 3.90 -67.68 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.47 Total: 32.25 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.29 Total: 12.39 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.54 Total: -94.24 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -0.35 Total: -61.90 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.59 3.90 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495343311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.312 kcal (2) G-P(sol) polarization free energy of solvation -71.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds