Wall clock time and date at job start Tue Mar 31 2020 16:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47072 * 2 1 4 4 C 1.50699 * 109.47114 * 240.00621 * 2 1 3 5 5 H 1.08001 * 119.99595 * 244.42336 * 4 2 1 6 6 C 1.37874 * 120.00310 * 64.42012 * 4 2 1 7 7 N 1.31516 * 119.99795 * 354.60499 * 6 4 2 8 8 Si 1.86799 * 119.99960 * 174.60556 * 6 4 2 9 9 H 1.48507 * 109.47000 * 95.00376 * 8 6 4 10 10 H 1.48501 * 109.47213 * 214.99637 * 8 6 4 11 11 H 1.48495 * 109.47219 * 335.00205 * 8 6 4 12 12 C 1.53003 * 109.47519 * 119.99990 * 2 1 3 13 13 N 1.46497 * 109.46981 * 300.00464 * 12 2 1 14 14 C 1.34777 * 119.99718 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.47587 * 119.99804 * 179.97438 * 14 13 12 17 17 C 1.39752 * 120.07667 * 0.26950 * 16 14 13 18 18 C 1.37662 * 119.92704 * 180.27446 * 17 16 14 19 19 C 1.39137 * 120.06985 * 359.45360 * 18 17 16 20 20 N 1.39447 * 119.91968 * 180.29549 * 19 18 17 21 21 C 1.47100 * 125.55388 * 173.79969 * 20 19 18 22 22 C 1.54087 * 103.77378 * 179.97438 * 21 20 19 23 23 O 1.45696 * 104.01080 * 0.32352 * 22 21 20 24 24 C 1.33776 * 109.47883 * 359.78964 * 23 22 21 25 25 O 1.21502 * 123.07481 * 180.02562 * 24 23 22 26 26 C 1.39124 * 120.15271 * 0.28058 * 19 18 17 27 27 C 1.37666 * 120.07431 * 359.97438 * 26 19 18 28 28 H 1.09005 * 109.47153 * 304.94163 * 1 2 3 29 29 H 1.08999 * 109.47700 * 64.94122 * 1 2 3 30 30 H 1.08997 * 109.46880 * 184.94736 * 1 2 3 31 31 H 1.08993 * 109.47062 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46912 * 300.00555 * 3 2 1 33 33 H 1.08999 * 109.46774 * 60.00241 * 3 2 1 34 34 H 0.97007 * 119.99693 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47163 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46826 * 59.99963 * 12 2 1 37 37 H 0.97003 * 120.00490 * 359.97438 * 13 12 2 38 38 H 1.08003 * 120.03830 * 0.03461 * 17 16 14 39 39 H 1.08001 * 119.96367 * 179.73589 * 18 17 16 40 40 H 1.09004 * 110.56550 * 298.60685 * 21 20 19 41 41 H 1.08997 * 110.56624 * 61.46544 * 21 20 19 42 42 H 1.08998 * 110.70449 * 241.60211 * 22 21 20 43 43 H 1.09010 * 110.46009 * 118.92481 * 22 21 20 44 44 H 1.08003 * 119.96481 * 180.02562 * 26 19 18 45 45 H 1.07997 * 120.03779 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5930 -1.6282 -1.1331 6 6 1.7761 -0.1884 -2.4807 7 7 1.0046 0.8694 -2.6062 8 14 2.5246 -0.9837 -3.9962 9 1 1.5521 -1.9390 -4.5852 10 1 2.8542 0.0655 -4.9941 11 1 3.7623 -1.7097 -3.6140 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5753 -1.4806 3.7810 16 6 1.3854 0.2045 4.8745 17 6 0.5780 1.3382 4.7482 18 6 0.1259 1.9883 5.8743 19 6 0.4626 1.5112 7.1372 20 7 -0.0022 2.1686 8.2757 21 6 0.1675 1.7038 9.6610 22 6 -0.5261 2.7934 10.5012 23 8 -1.0157 3.7437 9.5114 24 6 -0.6823 3.3232 8.2860 25 8 -0.9693 3.9326 7.2748 26 6 1.2616 0.3797 7.2666 27 6 1.7215 -0.2722 6.1446 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4352 -0.9309 30 1 -0.3633 -1.0238 0.0886 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8247 1.2368 -3.4858 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9942 0.7581 2.3565 38 1 0.3122 1.7061 3.7682 39 1 -0.4946 2.8669 5.7773 40 1 -0.3208 0.7398 9.8040 41 1 1.2252 1.6399 9.9166 42 1 0.1856 3.2736 11.1727 43 1 -1.3559 2.3684 11.0661 44 1 1.5208 0.0117 8.2484 45 1 2.3413 -1.1507 6.2458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495928444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:54 Heat of formation + Delta-G solvation = -70.783497 kcal Electronic energy + Delta-G solvation = -27893.255439 eV Core-core repulsion = 23876.469692 eV Total energy + Delta-G solvation = -4016.785747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.40716 -40.01067 -38.59293 -37.72930 -36.38930 -35.77534 -33.38217 -31.45496 -31.33641 -30.57332 -29.54133 -25.90110 -25.71201 -25.23312 -24.84930 -23.92191 -22.34410 -21.63174 -20.24080 -18.89141 -18.56432 -18.01792 -17.70607 -17.44127 -16.13241 -15.75352 -15.25944 -15.09468 -14.92268 -14.81450 -14.74694 -14.50092 -14.44558 -14.23685 -13.71719 -13.48050 -13.04346 -12.95371 -12.91116 -12.58864 -12.50746 -12.17291 -11.64023 -11.38737 -11.31589 -11.17720 -10.86785 -10.70884 -10.68195 -10.57414 -10.37994 -10.18453 -9.63750 -9.62355 -9.25547 -9.23074 -8.80892 -8.51785 -8.34967 -8.20387 -6.01168 -4.10694 0.67145 1.19399 1.74569 2.18259 2.79961 3.06129 3.29005 3.36677 3.40864 3.43197 3.71452 3.89183 3.95788 4.03097 4.41467 4.53159 4.58993 4.64479 4.78102 4.93354 5.01048 5.11498 5.16582 5.25366 5.36696 5.76094 5.99077 6.02727 6.16013 6.21137 6.31394 6.33760 6.51871 6.67116 6.77707 6.80156 6.84163 6.95564 7.02308 7.03244 7.36602 7.43381 7.56231 7.70952 8.02631 8.04392 8.16432 8.39930 8.66962 8.89774 9.54759 11.00180 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.002218 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.291437 B =12623.564627 C =13452.822613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.548 3.452 15 O -0.552 6.552 16 C -0.147 4.147 17 C -0.054 4.054 18 C -0.159 4.159 19 C 0.195 3.805 20 N -0.568 5.568 21 C 0.058 3.942 22 C 0.042 3.958 23 O -0.320 6.320 24 C 0.644 3.356 25 O -0.495 6.495 26 C -0.164 4.164 27 C -0.033 4.033 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 3.041 27.680 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.335 3.665 15 O -0.432 6.432 16 C -0.151 4.151 17 C -0.073 4.073 18 C -0.179 4.179 19 C 0.101 3.899 20 N -0.305 5.305 21 C -0.065 4.065 22 C -0.033 4.033 23 O -0.230 6.230 24 C 0.398 3.602 25 O -0.378 6.378 26 C -0.184 4.184 27 C -0.053 4.053 28 H 0.025 0.975 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.234 0.766 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.907 3.048 27.173 27.498 hybrid contribution 0.188 -0.161 -0.687 0.730 sum -2.719 2.887 26.486 26.781 Atomic orbital electron populations 1.21847 0.97817 0.98393 1.00809 1.18373 0.92751 0.92872 0.90577 1.21847 0.98657 0.98309 1.00283 1.20972 1.34630 1.08815 0.89943 0.92397 1.24884 0.94807 0.95049 0.98823 1.69815 1.36339 1.22881 1.23273 0.86567 0.79676 0.78987 0.82709 1.20827 1.21216 1.19849 1.21772 0.98306 0.95805 0.83220 1.46264 1.52191 1.31626 1.05934 1.18152 0.80747 0.84203 0.83441 1.90738 1.38913 1.26514 1.86995 1.20188 1.02423 0.98041 0.94415 1.21305 0.94008 0.93083 0.98918 1.21488 1.03479 1.03142 0.89752 1.17545 0.95445 0.92707 0.84155 1.45283 1.55447 1.22969 1.06781 1.23026 1.03939 0.99720 0.79808 1.24376 1.00490 0.87901 0.90548 1.87347 1.72985 1.46829 1.15837 1.18467 0.77613 0.80224 0.83853 1.90990 1.57726 1.59476 1.29591 1.20610 1.01739 0.96512 0.99586 1.21035 0.95899 0.98261 0.90069 0.97471 0.89622 0.95524 0.95372 0.89294 0.97519 0.93002 0.92474 0.92553 0.76610 0.84691 0.82206 0.87838 0.87875 0.86978 0.86996 0.85161 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.10 37.16 0.30 -2.67 16 2 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -3.04 8.03 37.16 0.30 -2.74 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.12 -17.82 -0.09 1.64 16 7 N -0.88 -23.69 9.36 55.43 0.52 -23.17 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.71 -12.98 4.94 -61.33 -0.30 -13.29 16 14 C 0.55 9.84 7.76 -12.45 -0.10 9.74 16 15 O -0.55 -11.57 16.34 5.29 0.09 -11.48 16 16 C -0.15 -2.10 5.88 -104.95 -0.62 -2.72 16 17 C -0.05 -0.70 9.53 -39.23 -0.37 -1.07 16 18 C -0.16 -1.98 9.27 -39.46 -0.37 -2.35 16 19 C 0.19 2.07 6.62 -83.73 -0.55 1.52 16 20 N -0.57 -4.91 3.15 -118.26 -0.37 -5.29 16 21 C 0.06 0.18 6.48 -3.15 -0.02 0.16 16 22 C 0.04 0.10 8.23 37.73 0.31 0.41 16 23 O -0.32 -2.70 11.09 -37.84 -0.42 -3.12 16 24 C 0.64 7.09 8.76 53.71 0.47 7.56 16 25 O -0.49 -7.31 14.75 -19.11 -0.28 -7.59 16 26 C -0.16 -1.54 9.47 -39.46 -0.37 -1.91 16 27 C -0.03 -0.40 9.58 -39.22 -0.38 -0.77 16 28 H 0.01 0.13 7.01 -51.93 -0.36 -0.24 16 29 H 0.09 2.16 6.13 -51.93 -0.32 1.84 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.24 5.94 -51.93 -0.31 1.93 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.40 6.62 4.22 -40.82 -0.17 6.45 16 38 H 0.14 1.64 6.39 -52.48 -0.34 1.30 16 39 H 0.16 2.16 5.27 -52.49 -0.28 1.89 16 40 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.10 0.14 8.11 -51.93 -0.42 -0.28 16 42 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.11 0.01 8.14 -51.92 -0.42 -0.41 16 44 H 0.13 0.77 7.28 -52.48 -0.38 0.39 16 45 H 0.14 1.66 7.64 -52.49 -0.40 1.26 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -33.04 364.22 -8.00 -41.04 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.84 Total: 4.37 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.86 Total: -2.74 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.16 Total: -41.75 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.62 Total: -22.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.04 -8.00 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495928444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.747 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds