Wall clock time and date at job start Tue Mar 31 2020 16:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47072 * 2 1 4 4 C 1.50699 * 109.47114 * 240.00621 * 2 1 3 5 5 H 1.08001 * 119.99595 * 244.42336 * 4 2 1 6 6 C 1.37874 * 120.00310 * 64.42012 * 4 2 1 7 7 N 1.31516 * 119.99795 * 354.60499 * 6 4 2 8 8 Si 1.86799 * 119.99960 * 174.60556 * 6 4 2 9 9 H 1.48507 * 109.47000 * 95.00376 * 8 6 4 10 10 H 1.48501 * 109.47213 * 214.99637 * 8 6 4 11 11 H 1.48495 * 109.47219 * 335.00205 * 8 6 4 12 12 C 1.53003 * 109.47519 * 119.99990 * 2 1 3 13 13 N 1.46497 * 109.46981 * 300.00464 * 12 2 1 14 14 C 1.34777 * 119.99718 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.47587 * 119.99804 * 179.97438 * 14 13 12 17 17 C 1.39752 * 120.07667 * 0.26950 * 16 14 13 18 18 C 1.37662 * 119.92704 * 180.27446 * 17 16 14 19 19 C 1.39137 * 120.06985 * 359.45360 * 18 17 16 20 20 N 1.39447 * 119.91968 * 180.29549 * 19 18 17 21 21 C 1.47100 * 125.55388 * 173.79969 * 20 19 18 22 22 C 1.54087 * 103.77378 * 179.97438 * 21 20 19 23 23 O 1.45696 * 104.01080 * 0.32352 * 22 21 20 24 24 C 1.33776 * 109.47883 * 359.78964 * 23 22 21 25 25 O 1.21502 * 123.07481 * 180.02562 * 24 23 22 26 26 C 1.39124 * 120.15271 * 0.28058 * 19 18 17 27 27 C 1.37666 * 120.07431 * 359.97438 * 26 19 18 28 28 H 1.09005 * 109.47153 * 304.94163 * 1 2 3 29 29 H 1.08999 * 109.47700 * 64.94122 * 1 2 3 30 30 H 1.08997 * 109.46880 * 184.94736 * 1 2 3 31 31 H 1.08993 * 109.47062 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46912 * 300.00555 * 3 2 1 33 33 H 1.08999 * 109.46774 * 60.00241 * 3 2 1 34 34 H 0.97007 * 119.99693 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47163 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46826 * 59.99963 * 12 2 1 37 37 H 0.97003 * 120.00490 * 359.97438 * 13 12 2 38 38 H 1.08003 * 120.03830 * 0.03461 * 17 16 14 39 39 H 1.08001 * 119.96367 * 179.73589 * 18 17 16 40 40 H 1.09004 * 110.56550 * 298.60685 * 21 20 19 41 41 H 1.08997 * 110.56624 * 61.46544 * 21 20 19 42 42 H 1.08998 * 110.70449 * 241.60211 * 22 21 20 43 43 H 1.09010 * 110.46009 * 118.92481 * 22 21 20 44 44 H 1.08003 * 119.96481 * 180.02562 * 26 19 18 45 45 H 1.07997 * 120.03779 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5930 -1.6282 -1.1331 6 6 1.7761 -0.1884 -2.4807 7 7 1.0046 0.8694 -2.6062 8 14 2.5246 -0.9837 -3.9962 9 1 1.5521 -1.9390 -4.5852 10 1 2.8542 0.0655 -4.9941 11 1 3.7623 -1.7097 -3.6140 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5753 -1.4806 3.7810 16 6 1.3854 0.2045 4.8745 17 6 0.5780 1.3382 4.7482 18 6 0.1259 1.9883 5.8743 19 6 0.4626 1.5112 7.1372 20 7 -0.0022 2.1686 8.2757 21 6 0.1675 1.7038 9.6610 22 6 -0.5261 2.7934 10.5012 23 8 -1.0157 3.7437 9.5114 24 6 -0.6823 3.3232 8.2860 25 8 -0.9693 3.9326 7.2748 26 6 1.2616 0.3797 7.2666 27 6 1.7215 -0.2722 6.1446 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4352 -0.9309 30 1 -0.3633 -1.0238 0.0886 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.8247 1.2368 -3.4858 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9942 0.7581 2.3565 38 1 0.3122 1.7061 3.7682 39 1 -0.4946 2.8669 5.7773 40 1 -0.3208 0.7398 9.8040 41 1 1.2252 1.6399 9.9166 42 1 0.1856 3.2736 11.1727 43 1 -1.3559 2.3684 11.0661 44 1 1.5208 0.0117 8.2484 45 1 2.3413 -1.1507 6.2458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495928444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:53 Heat of formation + Delta-G solvation = -91.703340 kcal Electronic energy + Delta-G solvation = -27894.162592 eV Core-core repulsion = 23876.469692 eV Total energy + Delta-G solvation = -4017.692900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.03606 -41.21213 -39.69912 -38.57633 -38.09115 -36.57355 -35.07509 -32.96364 -32.14237 -31.71009 -30.23281 -27.58334 -27.54808 -26.99483 -25.44967 -25.00368 -23.15993 -22.53620 -21.45535 -20.64259 -19.35476 -19.02669 -18.52651 -18.07663 -17.79077 -17.09991 -16.65350 -16.28096 -16.23689 -15.90821 -15.68249 -15.24680 -15.19616 -15.02669 -14.86343 -14.67642 -14.57146 -14.53857 -13.99758 -13.60662 -13.48875 -13.24492 -13.21177 -13.08355 -12.69023 -12.59692 -12.54146 -12.27991 -12.12840 -11.91319 -11.51492 -11.49962 -11.29555 -11.27283 -10.93877 -10.73126 -10.37217 -10.12488 -10.00512 -9.15966 -8.02552 -6.17876 -0.31770 0.29947 1.10831 1.34627 1.42372 1.45613 1.54634 1.92672 2.27951 2.40376 2.49433 2.82659 3.20856 3.21486 3.36631 3.76232 3.83531 3.94805 3.99406 4.16149 4.30962 4.40185 4.43250 4.50628 4.53765 4.67267 4.69248 4.70316 4.90572 4.97943 5.03561 5.08804 5.11845 5.18083 5.19752 5.26529 5.33888 5.35289 5.55704 5.64599 5.67343 5.80901 6.13219 6.14009 6.20173 6.42979 6.62052 6.67339 6.85955 7.24143 7.49454 8.96566 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.002218 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.291437 B =12623.564627 C =13452.822613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.124 4.124 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.147 3.853 13 N -0.707 5.707 14 C 0.549 3.451 15 O -0.587 6.587 16 C -0.170 4.170 17 C -0.053 4.053 18 C -0.176 4.176 19 C 0.203 3.797 20 N -0.566 5.566 21 C 0.050 3.950 22 C 0.036 3.964 23 O -0.336 6.336 24 C 0.639 3.361 25 O -0.547 6.547 26 C -0.142 4.142 27 C -0.033 4.033 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.406 0.594 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.177 0.823 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 2.722 31.097 31.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.469 6.469 16 C -0.174 4.174 17 C -0.073 4.073 18 C -0.196 4.196 19 C 0.109 3.891 20 N -0.302 5.302 21 C -0.070 4.070 22 C -0.037 4.037 23 O -0.246 6.246 24 C 0.395 3.605 25 O -0.434 6.434 26 C -0.162 4.162 27 C -0.052 4.052 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.244 0.756 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.195 0.805 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.811 2.733 30.659 30.909 hybrid contribution 0.119 -0.032 -1.535 1.540 sum -2.691 2.700 29.124 29.373 Atomic orbital electron populations 1.21693 0.97269 0.98342 1.00630 1.18373 0.93152 0.93054 0.90462 1.21700 0.98046 0.97974 1.00465 1.21251 1.34883 1.08859 0.91497 0.93504 1.25484 0.95210 0.95639 1.01016 1.69925 1.36728 1.23482 1.23664 0.85724 0.78847 0.78213 0.79896 1.20552 1.20852 1.19935 1.21338 0.97254 0.95162 0.83900 1.46099 1.52506 1.31814 1.05418 1.18679 0.79757 0.83682 0.84046 1.90708 1.40568 1.28167 1.87503 1.19923 1.04680 0.99097 0.93672 1.21251 0.93870 0.92787 0.99347 1.21452 1.04119 1.03121 0.90876 1.17659 0.94562 0.92652 0.84253 1.45397 1.54229 1.22175 1.08376 1.23552 1.06236 1.00828 0.76385 1.24921 1.02208 0.87017 0.89510 1.87323 1.73022 1.48469 1.15747 1.18697 0.77336 0.80443 0.84052 1.90946 1.59637 1.61057 1.31712 1.20902 0.99699 0.94926 1.00678 1.21195 0.95712 0.98432 0.89874 0.94797 0.92017 0.95968 0.96155 0.91517 0.94812 0.93032 0.93948 0.93919 0.75629 0.84662 0.83558 0.85256 0.85086 0.84245 0.84311 0.80550 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.10 71.98 0.58 -4.97 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.71 8.03 71.98 0.58 -5.13 16 4 C -0.53 -28.20 8.01 25.60 0.21 -28.00 16 5 H 0.05 2.55 7.75 -2.91 -0.02 2.52 16 6 C 0.03 1.40 5.12 84.65 0.43 1.83 16 7 N -0.90 -48.77 9.36 21.45 0.20 -48.57 16 8 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.15 6.45 4.50 86.38 0.39 6.84 16 13 N -0.71 -26.06 4.94 -466.22 -2.30 -28.37 16 14 C 0.55 19.80 7.76 86.71 0.67 20.48 16 15 O -0.59 -24.91 16.34 -4.00 -0.07 -24.97 16 16 C -0.17 -4.75 5.88 -20.08 -0.12 -4.87 16 17 C -0.05 -1.37 9.53 22.50 0.21 -1.15 16 18 C -0.18 -4.31 9.27 22.35 0.21 -4.10 16 19 C 0.20 3.83 6.62 38.36 0.25 4.08 16 20 N -0.57 -8.15 3.15 -759.80 -2.39 -10.54 16 21 C 0.05 0.07 6.48 86.63 0.56 0.63 16 22 C 0.04 0.03 8.23 72.35 0.60 0.62 16 23 O -0.34 -5.00 11.09 -47.36 -0.53 -5.53 16 24 C 0.64 13.34 8.76 129.91 1.14 14.48 16 25 O -0.55 -16.51 14.75 19.68 0.29 -16.22 16 26 C -0.14 -2.12 9.47 22.35 0.21 -1.90 16 27 C -0.03 -0.71 9.58 22.50 0.22 -0.50 16 28 H 0.03 1.32 7.01 -2.38 -0.02 1.30 16 29 H 0.06 3.14 6.13 -2.39 -0.01 3.12 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 3.39 5.94 -2.39 -0.01 3.38 16 33 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 34 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 35 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.41 13.43 4.22 -92.71 -0.39 13.04 16 38 H 0.14 3.31 6.39 -2.91 -0.02 3.29 16 39 H 0.15 4.09 5.27 -2.91 -0.02 4.08 16 40 H 0.13 -0.41 8.14 -2.39 -0.02 -0.42 16 41 H 0.13 -0.47 8.11 -2.39 -0.02 -0.49 16 42 H 0.14 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.14 -0.63 8.14 -2.38 -0.02 -0.65 16 44 H 0.18 0.98 7.28 -2.91 -0.02 0.96 16 45 H 0.15 3.10 7.64 -2.91 -0.02 3.08 16 Total: -1.00 -75.49 364.22 3.99 -71.49 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.64 Total: 16.88 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 6.12 Total: 0.69 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -4.49 Total: -87.47 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.30 Total: -46.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -75.49 3.99 -71.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495928444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.209 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds