Wall clock time and date at job start Tue Mar 31 2020 17:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 N 1.46497 * 109.46936 * 119.99931 * 2 1 3 5 5 C 1.46501 * 120.00491 * 303.65795 * 4 2 1 6 6 C 1.50693 * 109.47065 * 263.15925 * 5 4 2 7 7 H 1.07998 * 120.00812 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99796 * 179.97438 * 6 5 4 9 9 N 1.31503 * 120.00129 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99815 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47626 * 89.99473 * 10 8 6 12 12 H 1.48505 * 109.46810 * 210.00030 * 10 8 6 13 13 H 1.48508 * 109.47140 * 329.99571 * 10 8 6 14 14 C 1.34780 * 119.99508 * 123.66309 * 4 2 1 15 15 O 1.21356 * 120.00096 * 3.87480 * 14 4 2 16 16 C 1.49355 * 119.99519 * 183.87460 * 14 4 2 17 17 O 1.21375 * 120.00398 * 354.27624 * 16 14 4 18 18 N 1.34783 * 119.99780 * 174.55879 * 16 14 4 19 19 C 1.39721 * 119.99814 * 184.49076 * 18 16 14 20 20 C 1.38953 * 120.06384 * 323.45576 * 19 18 16 21 21 C 1.38145 * 119.96341 * 179.70494 * 20 19 18 22 22 C 1.38044 * 120.02262 * 0.59020 * 21 20 19 23 23 C 1.38674 * 120.15970 * 359.68544 * 22 21 20 24 24 C 1.37838 * 120.11645 * 0.02562 * 23 22 21 25 25 C 1.51096 * 107.26636 * 180.02562 * 23 22 21 26 26 O 1.43933 * 105.95615 * 17.69773 * 25 23 22 27 27 C 1.43938 * 104.95894 * 331.52458 * 26 25 23 28 28 H 1.08993 * 109.46971 * 299.99977 * 1 2 3 29 29 H 1.08997 * 109.46854 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46971 * 240.00023 * 2 1 3 32 32 H 1.08993 * 109.47103 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47244 * 300.00394 * 3 2 1 34 34 H 1.09007 * 109.46789 * 60.00254 * 3 2 1 35 35 H 1.09006 * 109.46369 * 23.16119 * 5 4 2 36 36 H 1.08995 * 109.46726 * 143.15287 * 5 4 2 37 37 H 0.97000 * 120.00435 * 180.02562 * 9 8 6 38 38 H 0.96997 * 119.99980 * 4.48358 * 18 16 14 39 39 H 1.08003 * 120.01046 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.98503 * 180.25336 * 21 20 19 41 41 H 1.08007 * 120.07388 * 180.02562 * 24 23 22 42 42 H 1.08996 * 110.15506 * 136.82764 * 25 23 22 43 43 H 1.09005 * 110.15034 * 258.57836 * 25 23 22 44 44 H 1.09003 * 110.15206 * 147.60605 * 27 26 25 45 45 H 1.08995 * 110.14889 * 269.28726 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5996 -0.2386 2.5253 6 6 2.6561 0.6669 3.1039 7 1 3.5503 0.8837 2.5385 8 6 2.4812 1.2186 4.3554 9 7 3.4033 2.0084 4.8606 10 14 0.9348 0.8431 5.3338 11 1 1.1587 -0.3637 6.1698 12 1 0.6100 1.9982 6.2088 13 1 -0.1937 0.5963 4.4006 14 6 2.8530 -1.7418 1.0738 15 8 3.2557 -2.0724 -0.0222 16 6 3.2821 -2.4996 2.2871 17 8 2.9644 -2.1081 3.3912 18 7 4.0270 -3.6153 2.1563 19 6 4.3494 -4.3761 3.2830 20 6 4.6179 -3.7483 4.4933 21 6 4.9305 -4.5028 5.6075 22 6 4.9882 -5.8790 5.5157 23 6 4.7264 -6.5083 4.3080 24 6 4.4081 -5.7619 3.1939 25 6 4.8691 -7.9950 4.5369 26 8 4.7980 -8.1847 5.9619 27 6 5.3003 -6.9591 6.5253 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.6589 0.3061 2.4440 36 1 1.4644 -1.1020 3.1767 37 1 3.2805 2.3962 5.7411 38 1 4.3391 -3.8901 1.2800 39 1 4.5778 -2.6713 4.5638 40 1 5.1352 -4.0155 6.5493 41 1 4.2039 -6.2528 2.2537 42 1 4.0566 -8.5303 4.0457 43 1 5.8309 -8.3425 4.1593 44 1 4.7989 -6.7467 7.4696 45 1 6.3768 -7.0304 6.6799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527104086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:11 Heat of formation + Delta-G solvation = -54.953829 kcal Electronic energy + Delta-G solvation = -28965.566496 eV Core-core repulsion = 24949.467174 eV Total energy + Delta-G solvation = -4016.099321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01860 -40.27732 -38.69034 -37.12250 -36.29234 -34.41500 -32.78421 -31.60677 -31.43223 -30.36699 -27.99022 -27.82711 -26.81104 -25.41398 -23.98399 -22.60970 -22.09726 -21.67662 -20.20030 -19.06676 -17.59941 -17.04756 -16.98521 -16.64065 -16.37196 -16.31362 -15.81059 -15.20340 -15.01025 -14.49662 -14.15205 -14.13351 -13.74122 -13.60512 -13.43193 -13.33054 -12.98510 -12.79615 -12.56988 -12.54435 -12.32892 -12.04843 -11.86036 -11.75647 -11.62662 -11.21180 -11.15339 -10.96481 -10.76100 -10.49652 -10.37492 -10.29773 -10.13242 -9.84843 -9.50578 -8.94818 -8.76482 -8.50743 -8.06508 -7.89825 -6.09658 -4.06914 1.09069 1.29282 1.99318 2.67961 3.28745 3.33590 3.37466 3.53852 3.76279 3.79507 3.87578 4.23746 4.39590 4.52176 4.76253 4.86819 5.14996 5.16919 5.23224 5.23650 5.28830 5.35774 5.41980 5.46969 5.57119 5.62347 5.68030 5.86076 5.93360 5.99961 6.16303 6.17124 6.18421 6.25802 6.34285 6.45054 6.51501 6.54227 6.60661 6.87181 6.91794 7.01820 7.11657 7.36931 7.54978 7.86201 8.14489 8.41304 8.54065 8.91832 9.50989 11.03323 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003761 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.770059 B = 7443.309013 C = 8907.815631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.548 5.548 5 C 0.189 3.811 6 C -0.514 4.514 7 H 0.073 0.927 8 C 0.080 3.920 9 N -0.897 5.897 10 Si 0.871 3.129 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.268 1.268 14 C 0.512 3.488 15 O -0.557 6.557 16 C 0.498 3.502 17 O -0.444 6.444 18 N -0.660 5.660 19 C 0.160 3.840 20 C -0.111 4.111 21 C -0.071 4.071 22 C -0.154 4.154 23 C -0.120 4.120 24 C -0.119 4.119 25 C 0.095 3.905 26 O -0.364 6.364 27 C 0.095 3.905 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.418 0.582 39 H 0.153 0.847 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -14.434 -3.619 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.212 4.212 4 N -0.278 5.278 5 C 0.069 3.931 6 C -0.553 4.553 7 H 0.091 0.909 8 C -0.122 4.122 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.193 1.193 14 C 0.295 3.705 15 O -0.438 6.438 16 C 0.280 3.720 17 O -0.313 6.313 18 N -0.308 5.308 19 C 0.065 3.935 20 C -0.131 4.131 21 C -0.090 4.090 22 C -0.155 4.155 23 C -0.121 4.121 24 C -0.140 4.140 25 C 0.019 3.981 26 O -0.283 6.283 27 C 0.018 3.982 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.255 0.745 39 H 0.171 0.829 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.473 -14.286 -3.126 14.632 hybrid contribution -0.468 0.138 0.160 0.514 sum 0.005 -14.148 -2.966 14.456 Atomic orbital electron populations 1.22156 0.95120 1.01953 1.02628 1.21086 0.93815 0.94028 0.88143 1.22075 1.01860 0.94979 1.02287 1.48031 1.42857 1.27243 1.09677 1.20463 0.96662 0.97551 0.78430 1.21099 1.05088 1.27035 1.02040 0.90868 1.24718 0.96118 0.94469 0.96897 1.69881 1.33940 1.32182 1.17563 0.86930 0.84105 0.78232 0.80856 1.19796 1.21387 1.19252 1.19624 0.80706 0.82093 0.88120 1.90659 1.56453 1.69337 1.27324 1.20432 0.79659 0.81078 0.90822 1.90859 1.50355 1.63489 1.26560 1.43184 1.52373 1.25368 1.09887 1.17608 0.98221 0.89655 0.87979 1.21493 0.98063 1.02176 0.91351 1.20312 0.98494 0.91327 0.98876 1.20981 1.03597 0.94856 0.96059 1.20681 1.01261 0.96139 0.94055 1.20025 1.04188 0.91256 0.98520 1.21691 1.02283 0.91446 0.82697 1.89060 1.86028 1.35114 1.18055 1.21697 0.99212 0.81304 0.95941 0.91517 0.91607 0.92764 0.88985 0.92389 0.92723 0.90427 0.95022 0.91786 0.92657 0.74460 0.82943 0.85239 0.85353 0.88631 0.90587 0.88638 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.12 37.16 0.34 -1.96 16 2 C 0.13 2.26 3.24 -67.93 -0.22 2.04 16 3 C -0.15 -2.62 8.90 37.16 0.33 -2.29 16 4 N -0.55 -11.03 2.38 -168.01 -0.40 -11.43 16 5 C 0.19 4.28 3.15 -5.20 -0.02 4.26 16 6 C -0.51 -13.66 7.95 -34.44 -0.27 -13.94 16 7 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 8 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 9 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 10 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.51 10.20 7.67 -11.63 -0.09 10.11 16 15 O -0.56 -11.07 15.83 5.49 0.09 -10.99 16 16 C 0.50 9.58 7.60 -11.63 -0.09 9.49 16 17 O -0.44 -9.80 9.90 5.48 0.05 -9.74 16 18 N -0.66 -10.25 5.32 -10.27 -0.05 -10.30 16 19 C 0.16 2.40 6.27 -83.72 -0.53 1.88 16 20 C -0.11 -1.80 8.69 -39.35 -0.34 -2.14 16 21 C -0.07 -0.99 10.03 -39.69 -0.40 -1.39 16 22 C -0.15 -1.94 6.32 -104.33 -0.66 -2.60 16 23 C -0.12 -1.46 6.32 -104.41 -0.66 -2.12 16 24 C -0.12 -1.48 9.97 -39.45 -0.39 -1.87 16 25 C 0.10 0.95 7.63 36.20 0.28 1.22 16 26 O -0.36 -4.28 11.72 -35.23 -0.41 -4.69 16 27 C 0.09 0.99 7.63 36.20 0.28 1.27 16 28 H 0.07 1.02 6.53 -51.93 -0.34 0.68 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.54 6.92 -51.93 -0.36 1.18 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.48 7.29 -51.93 -0.38 1.10 16 35 H 0.03 0.70 5.31 -51.93 -0.28 0.43 16 36 H 0.06 1.52 4.82 -51.93 -0.25 1.27 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.42 5.53 8.30 -40.82 -0.34 5.19 16 39 H 0.15 2.90 6.33 -52.48 -0.33 2.57 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -31.60 366.41 -7.73 -39.33 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.09 Total: 7.65 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.54 Total: 4.09 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.32 Total: -47.50 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.27 Total: -25.42 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.60 -7.73 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.626 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds