Wall clock time and date at job start Tue Mar 31 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 N 1.46499 * 109.47616 * 120.00594 * 2 1 3 5 5 C 1.46507 * 119.99440 * 293.36426 * 4 2 1 6 6 C 1.50700 * 109.46856 * 269.99636 * 5 4 2 7 7 H 1.07996 * 119.99895 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99545 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00251 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99737 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47130 * 60.00171 * 10 8 6 12 12 H 1.48503 * 109.46938 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47426 * 300.00289 * 10 8 6 14 14 C 1.34767 * 120.00347 * 113.36049 * 4 2 1 15 15 O 1.21588 * 120.00013 * 182.59454 * 14 4 2 16 16 C 1.47616 * 120.00340 * 2.59894 * 14 4 2 17 17 C 1.39730 * 120.04994 * 313.07957 * 16 14 4 18 18 C 1.37838 * 120.10942 * 179.97438 * 17 16 14 19 19 C 1.38699 * 120.07701 * 0.23180 * 18 17 16 20 20 C 1.39687 * 120.09691 * 359.50242 * 19 18 17 21 21 C 1.38095 * 120.11696 * 0.51337 * 20 19 18 22 22 N 1.40264 * 119.24172 * 180.19546 * 20 19 18 23 23 C 1.46500 * 120.51566 * 195.79810 * 22 20 19 24 24 C 1.35084 * 118.96872 * 15.78333 * 22 20 19 25 25 O 1.21292 * 120.14062 * 181.63282 * 24 22 20 26 26 C 1.50753 * 119.72344 * 1.65100 * 24 22 20 27 27 O 1.35841 * 120.50587 * 180.32942 * 19 18 17 28 28 H 1.09003 * 109.46993 * 299.99167 * 1 2 3 29 29 H 1.08994 * 109.47261 * 59.99568 * 1 2 3 30 30 H 1.08999 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46557 * 240.00534 * 2 1 3 32 32 H 1.09000 * 109.47160 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47383 * 300.00348 * 3 2 1 34 34 H 1.09001 * 109.47197 * 60.00322 * 3 2 1 35 35 H 1.08996 * 109.47033 * 30.00000 * 5 4 2 36 36 H 1.09008 * 109.46581 * 149.99866 * 5 4 2 37 37 H 0.96998 * 119.99677 * 179.97438 * 9 8 6 38 38 H 1.07997 * 119.94427 * 359.96993 * 17 16 14 39 39 H 1.08004 * 119.96477 * 179.97438 * 18 17 16 40 40 H 1.07998 * 120.14373 * 179.71382 * 21 20 19 41 41 H 1.09004 * 109.47073 * 90.00227 * 23 22 20 42 42 H 1.09001 * 109.47554 * 210.00029 * 23 22 20 43 43 H 1.09001 * 109.47448 * 330.00880 * 23 22 20 44 44 H 1.08990 * 109.44060 * 88.67823 * 26 24 22 45 45 H 1.09003 * 109.44211 * 208.60601 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 1.7883 -0.1112 2.5218 6 6 2.9391 0.7928 2.8815 7 1 3.7600 0.9224 2.1919 8 6 2.9443 1.4536 4.0916 9 7 1.9454 1.2946 4.9321 10 14 4.3705 2.5748 4.5373 11 1 4.4764 3.6638 3.5333 12 1 4.1378 3.1611 5.8817 13 1 5.6313 1.7903 4.5514 14 6 2.6794 -1.8591 1.0768 15 8 3.0434 -2.4559 2.0717 16 6 2.9616 -2.4143 -0.2615 17 6 1.9508 -2.4662 -1.2249 18 6 2.2131 -2.9839 -2.4751 19 6 3.4802 -3.4593 -2.7788 20 6 4.4966 -3.4051 -1.8221 21 6 4.2404 -2.8880 -0.5675 22 7 5.7724 -3.8871 -2.1497 23 6 6.7542 -4.1674 -1.0991 24 6 6.0817 -4.0891 -3.4491 25 8 7.1683 -4.5332 -3.7546 26 6 5.0709 -3.7598 -4.5179 27 8 3.7501 -3.9652 -4.0103 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.8632 0.4650 2.5108 36 1 1.7098 -0.9104 3.2590 37 1 1.9493 1.7592 5.7835 38 1 0.9624 -2.1002 -0.9894 39 1 1.4300 -3.0233 -3.2178 40 1 5.0247 -2.8502 0.1740 41 1 6.6504 -5.2019 -0.7715 42 1 7.7595 -4.0091 -1.4896 43 1 6.5831 -3.5000 -0.2545 44 1 5.1864 -2.7183 -4.8179 45 1 5.2318 -4.4059 -5.3810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528326663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:23 Heat of formation + Delta-G solvation = -57.651946 kcal Electronic energy + Delta-G solvation = -29249.404859 eV Core-core repulsion = 25233.188538 eV Total energy + Delta-G solvation = -4016.216321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78942 -39.86969 -38.81598 -37.49118 -36.10271 -35.80923 -32.89445 -31.09965 -30.84449 -30.31531 -29.57480 -27.63312 -26.76067 -26.27463 -24.08607 -23.30707 -22.26581 -21.60083 -20.04627 -19.41760 -18.24428 -17.56071 -17.49446 -16.50769 -16.40975 -15.95265 -15.54292 -15.33253 -15.01897 -14.74066 -14.64683 -14.43495 -13.99511 -13.81709 -13.68864 -13.56788 -13.18804 -12.89315 -12.60368 -12.43286 -12.37717 -12.28080 -11.73913 -11.68538 -11.59570 -11.35492 -11.21809 -10.98219 -10.93236 -10.76488 -10.55104 -10.38091 -10.19708 -10.00136 -9.61498 -9.13769 -8.84419 -8.45635 -8.04360 -7.73899 -6.07218 -4.10994 0.71394 0.99533 1.96921 2.22843 2.93026 3.15707 3.28842 3.34052 3.36107 3.56826 3.64071 3.89967 4.38741 4.42517 4.55305 4.67585 4.75336 4.91719 4.98226 5.03843 5.14074 5.21145 5.24631 5.27471 5.40363 5.48925 5.49089 5.61234 5.69332 5.87637 5.95358 6.04957 6.09186 6.20705 6.24726 6.31197 6.35573 6.56767 6.58235 6.93788 7.03073 7.05167 7.40051 7.41267 7.48165 7.88968 8.20002 8.32832 8.82831 8.98557 9.53219 11.00945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003496 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.611689 B = 8007.129675 C = 8987.221145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 C -0.153 4.153 4 N -0.580 5.580 5 C 0.247 3.753 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.547 3.453 15 O -0.533 6.533 16 C -0.099 4.099 17 C -0.085 4.085 18 C -0.112 4.112 19 C 0.087 3.913 20 C 0.086 3.914 21 C -0.076 4.076 22 N -0.550 5.550 23 C 0.074 3.926 24 C 0.486 3.514 25 O -0.514 6.514 26 C 0.052 3.948 27 O -0.302 6.302 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -6.434 -18.806 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 C -0.211 4.211 4 N -0.311 5.311 5 C 0.128 3.872 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.333 3.667 15 O -0.411 6.411 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.131 4.131 19 C 0.040 3.960 20 C -0.007 4.007 21 C -0.097 4.097 22 N -0.275 5.275 23 C -0.067 4.067 24 C 0.275 3.725 25 O -0.389 6.389 26 C -0.026 4.026 27 O -0.216 6.216 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.007 -7.037 -18.365 19.693 hybrid contribution 1.053 0.798 0.498 1.412 sum 2.060 -6.239 -17.867 19.037 Atomic orbital electron populations 1.22223 0.95623 1.01702 1.02745 1.21386 0.93962 0.94661 0.88622 1.22087 1.01619 0.95266 1.02163 1.48281 1.53446 1.20088 1.09304 1.19286 0.96804 0.93983 0.77134 1.21373 1.05941 1.26353 1.02401 0.92415 1.24906 0.96088 0.96961 0.96041 1.69915 1.31041 1.43050 1.09320 0.86615 0.82848 0.80731 0.77567 1.20256 1.21213 1.20276 1.18004 0.79428 0.81812 0.87499 1.90791 1.52231 1.59842 1.38256 1.20097 0.93793 1.00904 0.95564 1.21372 0.99840 0.97721 0.91535 1.20426 0.94946 0.99623 0.98080 1.18760 0.93723 0.99519 0.83963 1.17913 0.84630 1.02802 0.95400 1.20683 0.97309 0.97205 0.94499 1.45550 1.12530 1.62108 1.07338 1.21957 0.92201 1.02363 0.90214 1.21544 0.89154 0.78149 0.83669 1.90765 1.23748 1.42996 1.81435 1.23195 0.78824 1.05120 0.95417 1.86174 1.30380 1.74419 1.30611 0.91263 0.91942 0.92823 0.89525 0.92544 0.93248 0.90198 0.94600 0.93821 0.92671 0.83676 0.83771 0.83941 0.91223 0.89514 0.89531 0.88230 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.82 37.16 0.33 -1.81 16 2 C 0.12 1.80 2.42 -67.93 -0.16 1.63 16 3 C -0.15 -2.43 8.32 37.15 0.31 -2.13 16 4 N -0.58 -11.54 2.38 -168.66 -0.40 -11.94 16 5 C 0.25 6.07 4.45 -5.19 -0.02 6.05 16 6 C -0.52 -13.96 7.86 -34.44 -0.27 -14.23 16 7 H 0.06 1.54 7.51 -52.49 -0.39 1.15 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.55 11.01 7.24 -12.44 -0.09 10.92 16 15 O -0.53 -13.07 16.57 5.29 0.09 -12.98 16 16 C -0.10 -1.53 5.08 -104.94 -0.53 -2.06 16 17 C -0.09 -1.03 7.29 -39.17 -0.29 -1.31 16 18 C -0.11 -1.15 9.98 -39.56 -0.39 -1.54 16 19 C 0.09 1.00 6.46 -38.87 -0.25 0.75 16 20 C 0.09 1.09 6.38 -83.51 -0.53 0.56 16 21 C -0.08 -1.08 9.01 -39.06 -0.35 -1.43 16 22 N -0.55 -6.67 3.12 -120.59 -0.38 -7.04 16 23 C 0.07 0.78 10.23 59.85 0.61 1.39 16 24 C 0.49 5.75 7.67 -10.82 -0.08 5.66 16 25 O -0.51 -7.31 16.77 5.55 0.09 -7.21 16 26 C 0.05 0.44 7.17 36.03 0.26 0.70 16 27 O -0.30 -3.11 10.43 -19.24 -0.20 -3.31 16 28 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.64 7.03 -51.93 -0.37 0.28 16 31 H 0.09 1.14 4.31 -51.93 -0.22 0.91 16 32 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 35 H 0.04 0.89 6.73 -51.93 -0.35 0.54 16 36 H 0.04 1.24 7.39 -51.92 -0.38 0.85 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.15 1.56 5.26 -52.49 -0.28 1.29 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.14 2.06 6.11 -52.49 -0.32 1.74 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.89 7.49 -51.93 -0.39 0.50 16 43 H 0.09 0.86 5.95 -51.93 -0.31 0.55 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -33.54 363.91 -6.98 -40.52 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.81 Total: 0.49 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.57 Total: 4.75 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.04 Total: -43.96 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.02 Total: -23.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.54 -6.98 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528326663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.129 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds