Wall clock time and date at job start Tue Mar 31 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 N 1.46499 * 109.47616 * 120.00594 * 2 1 3 5 5 C 1.46507 * 119.99440 * 293.36426 * 4 2 1 6 6 C 1.50700 * 109.46856 * 269.99636 * 5 4 2 7 7 H 1.07996 * 119.99895 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99545 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00251 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99737 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47130 * 60.00171 * 10 8 6 12 12 H 1.48503 * 109.46938 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47426 * 300.00289 * 10 8 6 14 14 C 1.34767 * 120.00347 * 113.36049 * 4 2 1 15 15 O 1.21588 * 120.00013 * 182.59454 * 14 4 2 16 16 C 1.47616 * 120.00340 * 2.59894 * 14 4 2 17 17 C 1.39730 * 120.04994 * 313.07957 * 16 14 4 18 18 C 1.37838 * 120.10942 * 179.97438 * 17 16 14 19 19 C 1.38699 * 120.07701 * 0.23180 * 18 17 16 20 20 C 1.39687 * 120.09691 * 359.50242 * 19 18 17 21 21 C 1.38095 * 120.11696 * 0.51337 * 20 19 18 22 22 N 1.40264 * 119.24172 * 180.19546 * 20 19 18 23 23 C 1.46500 * 120.51566 * 195.79810 * 22 20 19 24 24 C 1.35084 * 118.96872 * 15.78333 * 22 20 19 25 25 O 1.21292 * 120.14062 * 181.63282 * 24 22 20 26 26 C 1.50753 * 119.72344 * 1.65100 * 24 22 20 27 27 O 1.35841 * 120.50587 * 180.32942 * 19 18 17 28 28 H 1.09003 * 109.46993 * 299.99167 * 1 2 3 29 29 H 1.08994 * 109.47261 * 59.99568 * 1 2 3 30 30 H 1.08999 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46557 * 240.00534 * 2 1 3 32 32 H 1.09000 * 109.47160 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47383 * 300.00348 * 3 2 1 34 34 H 1.09001 * 109.47197 * 60.00322 * 3 2 1 35 35 H 1.08996 * 109.47033 * 30.00000 * 5 4 2 36 36 H 1.09008 * 109.46581 * 149.99866 * 5 4 2 37 37 H 0.96998 * 119.99677 * 179.97438 * 9 8 6 38 38 H 1.07997 * 119.94427 * 359.96993 * 17 16 14 39 39 H 1.08004 * 119.96477 * 179.97438 * 18 17 16 40 40 H 1.07998 * 120.14373 * 179.71382 * 21 20 19 41 41 H 1.09004 * 109.47073 * 90.00227 * 23 22 20 42 42 H 1.09001 * 109.47554 * 210.00029 * 23 22 20 43 43 H 1.09001 * 109.47448 * 330.00880 * 23 22 20 44 44 H 1.08990 * 109.44060 * 88.67823 * 26 24 22 45 45 H 1.09003 * 109.44211 * 208.60601 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 1.7883 -0.1112 2.5218 6 6 2.9391 0.7928 2.8815 7 1 3.7600 0.9224 2.1919 8 6 2.9443 1.4536 4.0916 9 7 1.9454 1.2946 4.9321 10 14 4.3705 2.5748 4.5373 11 1 4.4764 3.6638 3.5333 12 1 4.1378 3.1611 5.8817 13 1 5.6313 1.7903 4.5514 14 6 2.6794 -1.8591 1.0768 15 8 3.0434 -2.4559 2.0717 16 6 2.9616 -2.4143 -0.2615 17 6 1.9508 -2.4662 -1.2249 18 6 2.2131 -2.9839 -2.4751 19 6 3.4802 -3.4593 -2.7788 20 6 4.4966 -3.4051 -1.8221 21 6 4.2404 -2.8880 -0.5675 22 7 5.7724 -3.8871 -2.1497 23 6 6.7542 -4.1674 -1.0991 24 6 6.0817 -4.0891 -3.4491 25 8 7.1683 -4.5332 -3.7546 26 6 5.0709 -3.7598 -4.5179 27 8 3.7501 -3.9652 -4.0103 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.8632 0.4650 2.5108 36 1 1.7098 -0.9104 3.2590 37 1 1.9493 1.7592 5.7835 38 1 0.9624 -2.1002 -0.9894 39 1 1.4300 -3.0233 -3.2178 40 1 5.0247 -2.8502 0.1740 41 1 6.6504 -5.2019 -0.7715 42 1 7.7595 -4.0091 -1.4896 43 1 6.5831 -3.5000 -0.2545 44 1 5.1864 -2.7183 -4.8179 45 1 5.2318 -4.4059 -5.3810 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528326663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:22 Heat of formation + Delta-G solvation = -79.787213 kcal Electronic energy + Delta-G solvation = -29250.364716 eV Core-core repulsion = 25233.188538 eV Total energy + Delta-G solvation = -4017.176178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.70176 -41.21540 -39.84648 -38.49032 -37.63978 -36.81991 -34.91486 -32.47221 -32.05222 -31.34070 -30.42067 -29.31978 -27.93842 -27.35413 -25.36056 -24.75482 -23.46484 -22.86487 -21.20401 -20.33167 -19.50724 -18.64071 -18.59343 -18.37074 -17.55184 -17.10698 -16.87882 -16.45745 -16.31085 -15.92735 -15.82170 -15.46740 -15.27873 -15.10001 -14.84892 -14.62265 -14.39475 -14.14086 -14.05157 -13.64031 -13.49606 -13.32419 -13.23735 -13.20358 -12.84126 -12.71587 -12.60369 -12.41474 -12.31041 -12.20168 -12.08702 -11.81501 -11.55015 -11.39813 -11.12184 -10.72783 -10.60235 -9.83860 -9.45093 -8.99952 -8.19171 -6.30892 -0.28939 0.01928 1.07363 1.34466 1.36644 1.39714 1.46637 1.80884 2.07243 2.27894 2.42541 2.59853 2.82534 3.11047 3.43706 3.53578 3.87491 3.96797 4.00813 4.05995 4.07183 4.18861 4.31046 4.32562 4.37768 4.46992 4.57537 4.63853 4.66586 4.82808 4.90686 4.95195 5.04502 5.08099 5.14247 5.14744 5.23891 5.27869 5.36424 5.49686 5.58197 5.65617 5.70519 5.87343 6.10796 6.16430 6.50247 6.71640 6.78898 7.27462 7.43396 8.88057 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.003496 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.611689 B = 8007.129675 C = 8987.221145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 C -0.149 4.149 4 N -0.583 5.583 5 C 0.265 3.735 6 C -0.528 4.528 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.541 3.459 15 O -0.594 6.594 16 C -0.121 4.121 17 C -0.075 4.075 18 C -0.092 4.092 19 C 0.097 3.903 20 C 0.083 3.917 21 C -0.086 4.086 22 N -0.557 5.557 23 C 0.070 3.930 24 C 0.481 3.519 25 O -0.544 6.544 26 C 0.055 3.945 27 O -0.297 6.297 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.030 0.970 36 H -0.005 1.005 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -6.022 -22.931 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 C -0.207 4.207 4 N -0.313 5.313 5 C 0.144 3.856 6 C -0.567 4.567 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.329 3.671 15 O -0.476 6.476 16 C -0.125 4.125 17 C -0.094 4.094 18 C -0.110 4.110 19 C 0.050 3.950 20 C -0.011 4.011 21 C -0.107 4.107 22 N -0.282 5.282 23 C -0.071 4.071 24 C 0.271 3.729 25 O -0.421 6.421 26 C -0.022 4.022 27 O -0.211 6.211 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.013 0.987 37 H 0.074 0.926 38 H 0.180 0.820 39 H 0.204 0.796 40 H 0.145 0.855 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.145 0.855 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.318 -6.602 -22.546 23.495 hybrid contribution 1.281 0.598 1.688 2.202 sum 1.598 -6.004 -20.857 21.763 Atomic orbital electron populations 1.22205 0.93454 1.02769 1.03349 1.21804 0.95669 0.94086 0.87519 1.22042 1.00434 0.95769 1.02486 1.48286 1.53529 1.20366 1.09085 1.18693 0.96028 0.91905 0.78958 1.21604 1.06194 1.26383 1.02475 0.92912 1.25740 0.98595 0.98516 0.96020 1.70035 1.32888 1.44165 1.09734 0.85617 0.79247 0.79082 0.77782 1.18558 1.20578 1.20610 1.18778 0.78035 0.81252 0.88988 1.90741 1.54493 1.61522 1.40892 1.19665 0.95491 1.03560 0.93796 1.21497 0.99353 0.97286 0.91257 1.20763 0.95220 0.97325 0.97690 1.18972 0.93677 0.98240 0.84136 1.17903 0.85283 1.02848 0.95043 1.20532 0.96804 0.98143 0.95221 1.45727 1.12562 1.61973 1.07977 1.22002 0.92242 1.02627 0.90235 1.22261 0.89507 0.77249 0.83912 1.90754 1.25245 1.44390 1.81758 1.23508 0.76674 1.07520 0.94486 1.86192 1.31215 1.74132 1.29566 0.94069 0.87850 0.91585 0.86384 0.94350 0.88994 0.93696 0.95194 0.98689 0.92571 0.82025 0.79625 0.85535 0.90834 0.89335 0.89628 0.85458 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 8.82 71.98 0.64 -3.15 16 2 C 0.11 3.24 2.42 44.99 0.11 3.35 16 3 C -0.15 -4.58 8.32 71.98 0.60 -3.98 16 4 N -0.58 -23.96 2.38 -805.78 -1.92 -25.89 16 5 C 0.27 13.87 4.45 85.63 0.38 14.25 16 6 C -0.53 -29.53 7.86 25.60 0.20 -29.33 16 7 H 0.05 2.93 7.51 -2.91 -0.02 2.91 16 8 C 0.01 0.57 5.46 84.65 0.46 1.03 16 9 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 10 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 C 0.54 22.72 7.24 86.72 0.63 23.35 16 15 O -0.59 -31.32 16.57 -3.99 -0.07 -31.39 16 16 C -0.12 -3.68 5.08 -20.07 -0.10 -3.78 16 17 C -0.07 -1.56 7.29 22.54 0.16 -1.39 16 18 C -0.09 -1.42 9.98 22.29 0.22 -1.20 16 19 C 0.10 1.84 6.46 22.73 0.15 1.99 16 20 C 0.08 1.97 6.38 38.11 0.24 2.21 16 21 C -0.09 -2.46 9.01 22.60 0.20 -2.25 16 22 N -0.56 -12.91 3.12 -653.66 -2.04 -14.95 16 23 C 0.07 1.51 10.23 127.77 1.31 2.82 16 24 C 0.48 10.35 7.67 87.63 0.67 11.02 16 25 O -0.54 -14.75 16.77 -3.07 -0.05 -14.81 16 26 C 0.06 0.70 7.17 71.25 0.51 1.21 16 27 O -0.30 -4.70 10.43 -91.76 -0.96 -5.66 16 28 H 0.04 1.21 6.95 -2.39 -0.02 1.20 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.40 7.03 -2.39 -0.02 1.38 16 31 H 0.12 2.73 4.31 -2.38 -0.01 2.72 16 32 H 0.04 1.29 7.93 -2.39 -0.02 1.27 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.69 6.92 -2.39 -0.02 1.67 16 35 H 0.03 1.59 6.73 -2.39 -0.02 1.57 16 36 H 0.00 -0.31 7.39 -2.38 -0.02 -0.33 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.16 2.82 5.26 -2.91 -0.02 2.81 16 39 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.13 3.93 6.11 -2.91 -0.02 3.91 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.84 7.49 -2.39 -0.02 1.83 16 43 H 0.09 1.83 5.95 -2.39 -0.01 1.82 16 44 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -79.19 363.91 4.69 -74.50 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.03 Total: 10.66 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.38 Total: 16.15 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -3.68 Total: -95.99 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.07 Total: -51.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -79.19 4.69 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528326663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.285 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds