Wall clock time and date at job start Tue Mar 31 2020 17:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47165 * 180.02562 * 17 16 14 19 19 N 1.46497 * 109.47260 * 180.02562 * 18 17 16 20 20 C 1.39457 * 126.25338 * 269.71730 * 19 18 17 21 21 C 1.38619 * 133.36438 * 0.71835 * 20 19 18 22 22 C 1.38125 * 119.82602 * 179.63715 * 21 20 19 23 23 C 1.38408 * 120.18686 * 359.70884 * 22 21 20 24 24 C 1.38119 * 120.31412 * 0.02562 * 23 22 21 25 25 C 1.38617 * 119.91484 * 359.97438 * 24 23 22 26 26 O 1.35559 * 132.99473 * 179.97438 * 25 24 23 27 27 C 1.34234 * 109.17815 * 180.02562 * 26 25 24 28 28 O 1.21596 * 125.27449 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 39 39 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 40 40 H 1.08999 * 109.47231 * 300.00286 * 18 17 16 41 41 H 1.09004 * 109.47104 * 60.00186 * 18 17 16 42 42 H 1.07997 * 120.08112 * 359.36645 * 21 20 19 43 43 H 1.08003 * 119.90698 * 179.73263 * 22 21 20 44 44 H 1.08000 * 119.84138 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.04394 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7521 4.5662 3.8733 19 7 -3.1118 5.0993 3.7596 20 6 -3.4633 6.3754 3.3203 21 6 -2.7302 7.4634 2.8728 22 6 -3.3813 8.6199 2.4901 23 6 -4.7623 8.6924 2.5467 24 6 -5.4997 7.6104 2.9863 25 6 -4.8552 6.4456 3.3725 26 8 -5.3014 5.2522 3.8356 27 6 -4.2515 4.4481 4.0659 28 8 -4.3182 3.3092 4.4866 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -1.3974 4.6138 1.7493 39 1 -2.0528 3.0720 2.3506 40 1 -1.7139 3.8391 4.6845 41 1 -1.0584 5.3806 4.0825 42 1 -1.6526 7.4084 2.8277 43 1 -2.8111 9.4699 2.1453 44 1 -5.2656 9.5995 2.2464 45 1 -6.5772 7.6716 3.0283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546572136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:30 Heat of formation + Delta-G solvation = -65.251814 kcal Electronic energy + Delta-G solvation = -27952.739391 eV Core-core repulsion = 23936.193516 eV Total energy + Delta-G solvation = -4016.545876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57325 -39.36092 -38.93551 -37.85885 -36.65456 -35.37175 -33.52132 -32.44854 -31.45996 -31.12549 -29.87577 -28.08616 -26.88220 -23.85512 -23.48412 -23.14135 -22.29499 -21.36281 -20.36198 -19.53679 -18.98905 -18.21426 -17.72200 -17.62475 -16.84130 -16.28027 -15.89420 -15.55853 -15.23769 -15.09105 -14.67391 -14.39148 -14.19540 -13.91480 -13.68846 -13.61332 -13.22688 -12.79169 -12.75844 -12.64615 -12.47559 -12.22589 -12.00418 -11.88510 -11.63812 -11.60310 -11.20871 -10.98335 -10.95962 -10.84480 -10.69039 -10.45146 -9.90957 -9.60285 -9.27070 -9.21659 -9.04461 -8.52449 -8.36749 -8.10466 -6.60597 -4.24885 0.63168 0.71376 1.73760 2.19578 2.50388 3.11715 3.21766 3.37056 3.42451 3.57347 3.86805 3.94265 4.18584 4.39357 4.41749 4.63911 4.73068 4.76980 4.80636 4.87451 4.88136 5.10836 5.13870 5.20307 5.33463 5.42706 5.49474 5.63354 5.75876 5.89382 5.92470 5.93109 6.06396 6.09548 6.11861 6.15237 6.27537 6.68105 6.79000 6.85065 6.94644 7.04089 7.34615 7.35986 7.39427 7.63415 8.20272 8.45354 8.68012 8.96582 9.44309 10.79987 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002408 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.676866 B =11625.822451 C =12173.675409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.247 3.753 4 H 0.041 0.959 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.702 5.702 14 C 0.500 3.500 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.121 4.121 18 C 0.130 3.870 19 N -0.543 5.543 20 C 0.075 3.925 21 C -0.100 4.100 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.080 4.080 25 C 0.031 3.969 26 O -0.238 6.238 27 C 0.635 3.365 28 O -0.483 6.483 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.392 0.608 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 17.093 11.710 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.058 0.942 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.350 5.350 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.180 4.180 17 C -0.160 4.160 18 C 0.010 3.990 19 N -0.274 5.274 20 C -0.023 4.023 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.098 4.098 25 C -0.015 4.015 26 O -0.144 6.144 27 C 0.390 3.610 28 O -0.366 6.366 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.931 15.711 9.773 25.766 hybrid contribution 0.475 0.382 2.066 2.153 sum -17.456 16.093 11.839 26.530 Atomic orbital electron populations 1.21877 0.97364 0.98877 1.01906 1.22362 0.93793 0.99830 1.01820 1.19037 0.95734 0.88557 0.82358 0.94155 1.22093 0.89743 1.49531 1.04094 0.92106 1.25680 0.97539 0.92346 1.01223 1.70876 1.07080 1.40902 1.34300 0.84109 0.75494 0.77709 0.75868 1.20926 1.19497 1.20659 1.46259 1.14644 1.55993 1.18075 1.20343 0.82630 0.79336 0.89174 1.90673 1.50853 1.60013 1.41458 1.21566 0.97136 1.01535 0.97772 1.21700 0.96495 1.01564 0.96241 1.21799 0.77519 0.99616 1.00051 1.45933 1.08508 1.11803 1.61171 1.18612 0.93486 0.87741 1.02489 1.20181 1.00360 0.90709 1.00790 1.21050 0.94565 0.97229 0.98794 1.20962 0.93900 0.98029 1.00109 1.20050 1.00913 0.88825 1.00041 1.19049 0.90771 0.87304 1.04424 1.85002 1.33964 1.22690 1.72767 1.18543 0.78388 0.84685 0.79421 1.91175 1.83293 1.12376 1.49753 0.93085 0.95098 0.93326 0.91331 0.93121 0.92130 0.77477 0.89004 0.89033 0.90373 0.90252 0.88281 0.88654 0.84547 0.84256 0.84096 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.15 0.32 -2.62 16 2 C -0.14 -3.12 5.28 -26.73 -0.14 -3.26 16 3 C 0.25 5.79 1.82 -69.08 -0.13 5.66 16 4 H 0.04 1.04 6.26 -51.93 -0.32 0.72 16 5 C -0.62 -16.41 9.01 -34.44 -0.31 -16.72 16 6 H 0.06 1.68 7.96 -52.48 -0.42 1.27 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.54 13.69 55.43 0.76 -25.79 16 9 Si 1.04 25.01 26.27 -169.99 -4.47 20.55 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.08 5.67 56.52 0.32 -5.76 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.70 -13.49 5.03 -54.94 -0.28 -13.77 16 14 C 0.50 8.83 6.42 -10.99 -0.07 8.76 16 15 O -0.55 -11.69 13.12 5.56 0.07 -11.62 16 16 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 17 C -0.12 -1.43 4.83 -26.73 -0.13 -1.56 16 18 C 0.13 1.18 6.04 -4.05 -0.02 1.16 16 19 N -0.54 -6.04 2.81 -119.01 -0.33 -6.37 16 20 C 0.07 0.73 6.84 -83.79 -0.57 0.16 16 21 C -0.10 -0.72 10.04 -39.48 -0.40 -1.12 16 22 C -0.10 -0.53 10.04 -39.56 -0.40 -0.93 16 23 C -0.11 -0.57 10.03 -39.56 -0.40 -0.97 16 24 C -0.08 -0.55 10.06 -39.49 -0.40 -0.95 16 25 C 0.03 0.32 7.35 -38.98 -0.29 0.03 16 26 O -0.24 -3.03 10.72 -22.00 -0.24 -3.26 16 27 C 0.63 8.75 9.07 54.06 0.49 9.24 16 28 O -0.48 -8.04 17.81 -19.00 -0.34 -8.38 16 29 H 0.05 1.09 7.88 -51.93 -0.41 0.69 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.98 5.63 -51.92 -0.29 0.69 16 32 H 0.07 1.61 4.74 -51.92 -0.25 1.36 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 35 H 0.39 6.64 8.53 -40.82 -0.35 6.29 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 40 H 0.10 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 44 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 45 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -34.40 372.62 -8.23 -42.63 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.34 Total: 4.31 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.70 Total: -3.91 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.15 Total: -45.93 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.50 Total: -23.26 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.47 Total: 20.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.40 -8.23 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546572136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.617 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds