Wall clock time and date at job start Tue Mar 31 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46692 * 2 1 4 4 H 1.08998 * 109.47570 * 304.99612 * 3 2 1 5 5 C 1.50707 * 109.46685 * 184.99982 * 3 2 1 6 6 H 1.08001 * 119.99430 * 240.00025 * 5 3 2 7 7 C 1.37875 * 120.00171 * 60.00228 * 5 3 2 8 8 N 1.31512 * 119.99694 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99973 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47420 * 89.99516 * 9 7 5 11 11 H 1.48501 * 109.46692 * 209.99893 * 9 7 5 12 12 H 1.48504 * 109.47183 * 329.99510 * 9 7 5 13 13 N 1.46498 * 109.47241 * 65.00220 * 3 2 1 14 14 C 1.34776 * 120.00075 * 274.99762 * 13 3 2 15 15 O 1.21364 * 119.99510 * 359.97438 * 14 13 3 16 16 C 1.49353 * 120.00440 * 180.02562 * 14 13 3 17 17 O 1.21378 * 119.99632 * 359.97438 * 16 14 13 18 18 N 1.34773 * 119.99962 * 180.27282 * 16 14 13 19 19 C 1.39760 * 119.99682 * 174.54638 * 18 16 14 20 20 C 1.39086 * 119.99734 * 325.77840 * 19 18 16 21 21 C 1.38231 * 120.27784 * 179.76353 * 20 19 18 22 22 C 1.37963 * 120.25518 * 0.50774 * 21 20 19 23 23 C 1.50710 * 120.01073 * 179.72227 * 22 21 20 24 24 C 1.39860 * 119.98187 * 359.74874 * 22 21 20 25 25 C 1.47177 * 120.14058 * 179.97438 * 24 22 21 26 26 C 1.50697 * 120.00158 * 173.83972 * 25 24 22 27 27 O 1.21259 * 119.99955 * 353.83016 * 25 24 22 28 28 C 1.38586 * 119.99090 * 146.04829 * 19 18 16 29 29 H 1.08993 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47125 * 299.99979 * 1 2 3 31 31 H 1.09001 * 109.46786 * 59.99909 * 1 2 3 32 32 H 1.08995 * 109.47222 * 240.00594 * 2 1 3 33 33 H 1.08998 * 109.47157 * 119.99726 * 2 1 3 34 34 H 0.97001 * 119.99814 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00106 * 94.99677 * 13 3 2 36 36 H 0.96994 * 120.00282 * 354.55268 * 18 16 14 37 37 H 1.08010 * 119.85696 * 0.02562 * 20 19 18 38 38 H 1.07999 * 119.87488 * 180.23484 * 21 20 19 39 39 H 1.08999 * 109.46851 * 263.17264 * 23 22 21 40 40 H 1.09004 * 109.46769 * 23.17515 * 23 22 21 41 41 H 1.08998 * 109.46897 * 143.17404 * 23 22 21 42 42 H 1.08996 * 109.47245 * 59.99613 * 26 25 24 43 43 H 1.09007 * 109.46944 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.47127 * 299.99324 * 26 25 24 45 45 H 1.08002 * 120.12444 * 359.96022 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3518 -0.7597 11 1 6.3835 0.9216 -2.8164 12 1 6.5576 2.0721 -0.6888 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3398 2.6326 0.4335 16 6 0.0401 3.3326 2.6430 17 8 0.8153 3.3648 3.5764 18 7 -1.1793 3.8946 2.7599 19 6 -1.5922 4.4188 3.9880 20 6 -1.1881 3.8139 5.1734 21 6 -1.5891 4.3303 6.3913 22 6 -2.4020 5.4440 6.4405 23 6 -2.8409 5.9987 7.7712 24 6 -2.8190 6.0577 5.2549 25 6 -3.6867 7.2455 5.3032 26 6 -4.0211 7.9865 4.0344 27 8 -4.1326 7.6278 6.3641 28 6 -2.4088 5.5380 4.0241 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9494 35 1 2.2719 2.1232 1.9978 36 1 -1.7703 3.9353 1.9919 37 1 -0.5549 2.9394 5.1422 38 1 -1.2684 3.8576 7.3079 39 1 -3.8338 5.6195 8.0132 40 1 -2.1360 5.6907 8.5435 41 1 -2.8704 7.0870 7.7193 42 1 -4.5326 7.3146 3.3453 43 1 -4.6700 8.8309 4.2670 44 1 -3.1027 8.3499 3.5731 45 1 -2.7266 6.0069 3.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566805510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:59 Heat of formation + Delta-G solvation = -101.930703 kcal Electronic energy + Delta-G solvation = -27806.439307 eV Core-core repulsion = 23788.302915 eV Total energy + Delta-G solvation = -4018.136392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.18484 -41.15650 -40.08410 -38.91189 -37.21797 -36.20753 -34.32911 -33.28725 -32.82279 -32.47002 -30.28270 -29.22638 -27.93391 -25.90350 -24.96371 -24.63943 -22.57820 -22.16360 -21.30666 -20.62008 -20.11252 -18.58826 -18.17763 -17.54905 -17.24096 -17.02971 -16.75497 -16.48784 -16.15879 -16.13609 -15.81366 -15.49707 -15.08587 -14.93408 -14.72875 -14.61576 -14.39740 -13.86658 -13.56306 -13.45713 -13.21353 -13.16746 -13.13394 -13.00788 -12.93852 -12.81497 -12.69401 -12.57502 -12.44471 -12.14807 -12.11060 -11.60415 -11.44632 -11.09938 -10.71225 -10.55877 -10.45006 -10.06518 -9.83980 -9.21146 -8.18686 -6.35401 -0.41032 -0.04899 0.55469 1.27097 1.41679 1.45252 1.47224 1.56672 2.15819 2.39283 2.68828 2.72824 3.08741 3.11472 3.49457 3.71735 3.89637 3.98246 4.17254 4.25590 4.30215 4.49242 4.55629 4.59622 4.67541 4.69511 4.71852 4.80488 4.83712 4.95185 5.02211 5.04765 5.18777 5.22783 5.24611 5.27837 5.36375 5.39695 5.52120 5.56505 5.67136 5.77565 5.81663 5.98944 6.11996 6.52959 6.55013 6.67347 6.79027 7.10760 7.36656 8.86372 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.002261 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.362513 B =12382.059051 C =12576.653163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.517 3.483 17 O -0.520 6.520 18 N -0.633 5.633 19 C 0.111 3.889 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.048 4.048 23 C -0.116 4.116 24 C -0.169 4.169 25 C 0.396 3.604 26 C -0.198 4.198 27 O -0.483 6.483 28 C -0.076 4.076 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.433 0.567 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 10.550 13.834 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.299 3.701 17 O -0.395 6.395 18 N -0.281 5.281 19 C 0.017 3.983 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.048 4.048 23 C -0.172 4.172 24 C -0.170 4.170 25 C 0.278 3.722 26 C -0.255 4.255 27 O -0.362 6.362 28 C -0.096 4.096 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.273 0.727 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.752 10.605 14.129 22.388 hybrid contribution 1.171 -0.405 -0.537 1.351 sum -12.581 10.200 13.591 21.144 Atomic orbital electron populations 1.21706 0.96475 0.99676 1.00470 1.21827 0.94222 0.98589 1.01672 1.18634 0.94011 0.89571 0.80355 0.96546 1.21520 0.91299 1.39472 1.06832 0.91431 1.25657 1.03040 0.94233 0.94929 1.70004 1.36945 1.37949 1.09807 0.85421 0.79399 0.78754 0.77242 1.19811 1.20954 1.19279 1.46241 1.14354 1.53119 1.18333 1.19973 0.83669 0.80889 0.87916 1.90739 1.51393 1.59889 1.40295 1.20318 0.82356 0.79141 0.88240 1.90751 1.51257 1.57011 1.40481 1.43021 1.16042 1.56497 1.12539 1.17763 1.00079 0.95522 0.84898 1.21481 0.98662 0.99632 0.91799 1.21115 0.98113 0.96215 0.98000 1.20494 0.94467 0.93977 0.95910 1.21028 1.01632 1.02272 0.92239 1.20327 1.03771 0.99801 0.93146 1.22851 0.75983 0.82179 0.91226 1.22311 1.05227 1.02050 0.95893 1.90499 1.45901 1.65705 1.34075 1.21377 0.96766 0.92513 0.98948 0.93326 0.94027 0.94465 0.90346 0.94222 0.92380 0.75650 0.72740 0.85497 0.83200 0.90590 0.90642 0.90326 0.86612 0.89406 0.87187 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.51 71.98 0.61 -4.55 16 2 C -0.12 -5.78 5.45 30.60 0.17 -5.61 16 3 C 0.28 13.44 2.24 44.25 0.10 13.54 16 4 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.23 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -49.62 11.29 21.45 0.24 -49.38 16 9 Si 0.97 41.13 29.54 68.60 2.03 43.15 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 N -0.67 -27.26 5.01 -447.52 -2.24 -29.50 16 14 C 0.50 18.24 6.45 87.24 0.56 18.81 16 15 O -0.54 -21.74 13.62 -3.29 -0.04 -21.79 16 16 C 0.52 15.81 7.62 87.24 0.66 16.47 16 17 O -0.52 -17.40 14.21 -3.33 -0.05 -17.44 16 18 N -0.63 -14.79 5.32 -304.95 -1.62 -16.41 16 19 C 0.11 2.38 6.25 38.16 0.24 2.62 16 20 C -0.10 -2.19 8.65 22.47 0.19 -1.99 16 21 C -0.12 -2.24 9.65 22.20 0.21 -2.03 16 22 C -0.05 -0.91 5.92 -19.53 -0.12 -1.03 16 23 C -0.12 -1.97 8.72 71.24 0.62 -1.35 16 24 C -0.17 -2.99 5.87 -20.17 -0.12 -3.11 16 25 C 0.40 6.46 7.16 28.03 0.20 6.66 16 26 C -0.20 -1.68 9.02 71.23 0.64 -1.04 16 27 O -0.48 -10.62 14.07 -2.97 -0.04 -10.66 16 28 C -0.08 -1.23 9.38 22.72 0.21 -1.02 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.62 5.65 -2.38 -0.01 1.61 16 31 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 32 H 0.08 4.08 5.95 -2.39 -0.01 4.07 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.41 15.51 8.01 -92.71 -0.74 14.77 16 36 H 0.43 8.47 8.30 -92.71 -0.77 7.70 16 37 H 0.13 3.24 6.46 -2.91 -0.02 3.22 16 38 H 0.15 2.25 8.05 -2.91 -0.02 2.23 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 41 H 0.08 1.54 5.87 -2.39 -0.01 1.52 16 42 H 0.12 0.52 7.90 -2.39 -0.02 0.51 16 43 H 0.09 0.74 8.12 -2.38 -0.02 0.73 16 44 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.17 1.57 6.99 -2.91 -0.02 1.55 16 Total: -1.00 -64.06 372.66 2.68 -61.38 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.46 Total: 30.89 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.87 Total: 9.75 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -3.62 Total: -95.29 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.13 Total: -49.89 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -64.06 2.68 -61.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566805510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.550 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds