Wall clock time and date at job start Tue Mar 31 2020 17:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47162 * 2 1 4 4 H 1.09000 * 109.46861 * 58.98585 * 3 2 1 5 5 C 1.50700 * 109.47207 * 178.98638 * 3 2 1 6 6 H 1.08000 * 120.00277 * 114.70419 * 5 3 2 7 7 C 1.37875 * 119.99777 * 294.70787 * 5 3 2 8 8 N 1.31518 * 119.99782 * 159.88380 * 7 5 3 9 9 Si 1.86800 * 120.00236 * 339.88236 * 7 5 3 10 10 H 1.48506 * 109.46995 * 180.02562 * 9 7 5 11 11 H 1.48492 * 109.47115 * 299.99954 * 9 7 5 12 12 H 1.48503 * 109.47082 * 60.00438 * 9 7 5 13 13 N 1.46503 * 109.47094 * 298.98751 * 3 2 1 14 14 C 1.34769 * 119.99822 * 85.00145 * 13 3 2 15 15 O 1.21355 * 120.00389 * 359.97438 * 14 13 3 16 16 C 1.49357 * 120.00046 * 179.97438 * 14 13 3 17 17 O 1.21377 * 119.99605 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00093 * 179.97438 * 16 14 13 19 19 C 1.39763 * 119.99613 * 184.18325 * 18 16 14 20 20 C 1.39088 * 119.99502 * 320.15349 * 19 18 16 21 21 C 1.38236 * 120.27433 * 179.76536 * 20 19 18 22 22 C 1.37961 * 120.25871 * 0.51280 * 21 20 19 23 23 C 1.50701 * 120.01214 * 179.72018 * 22 21 20 24 24 C 1.39862 * 119.97670 * 359.74430 * 22 21 20 25 25 C 1.47183 * 120.13751 * 179.97438 * 24 22 21 26 26 C 1.50699 * 120.00231 * 174.17636 * 25 24 22 27 27 O 1.21255 * 119.99860 * 354.17534 * 25 24 22 28 28 C 1.38582 * 119.98949 * 140.42897 * 19 18 16 29 29 H 1.08996 * 109.47123 * 59.99923 * 1 2 3 30 30 H 1.08995 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46767 * 300.00019 * 1 2 3 32 32 H 1.09006 * 109.47435 * 240.00116 * 2 1 3 33 33 H 1.08994 * 109.47512 * 120.00447 * 2 1 3 34 34 H 0.96999 * 120.00061 * 354.92349 * 8 7 5 35 35 H 0.97003 * 119.99557 * 264.99446 * 13 3 2 36 36 H 0.96997 * 120.00243 * 4.19181 * 18 16 14 37 37 H 1.08005 * 119.86021 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.87034 * 180.24968 * 21 20 19 39 39 H 1.08999 * 109.47297 * 262.85672 * 23 22 21 40 40 H 1.08999 * 109.47072 * 22.85804 * 23 22 21 41 41 H 1.09007 * 109.46673 * 142.85702 * 23 22 21 42 42 H 1.09007 * 109.46848 * 60.00140 * 26 25 24 43 43 H 1.09000 * 109.47414 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.47044 * 300.00138 * 26 25 24 45 45 H 1.08006 * 120.12966 * 359.95397 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6619 1.9615 0.8808 5 6 3.5468 1.4426 0.0251 6 1 4.1010 1.8285 -0.8177 7 6 4.2179 0.9500 1.1242 8 7 5.4750 0.5789 1.0151 9 14 3.3419 0.8096 2.7680 10 1 4.2761 0.2560 3.7811 11 1 2.8831 2.1539 3.2008 12 1 2.1704 -0.0924 2.6291 13 7 1.5717 2.1261 -1.2082 14 6 0.3500 2.6946 -1.2301 15 8 -0.3624 2.6399 -0.2492 16 6 -0.1273 3.3919 -2.4616 17 8 0.5855 3.4470 -3.4426 18 7 -1.3492 3.9600 -2.4837 19 6 -1.8309 4.5359 -3.6625 20 6 -0.9755 5.2688 -4.4784 21 6 -1.4446 5.8368 -5.6481 22 6 -2.7677 5.6901 -6.0103 23 6 -3.2746 6.3170 -7.2835 24 6 -3.6385 4.9598 -5.1951 25 6 -5.0509 4.8015 -5.5778 26 6 -5.9550 3.9072 -4.7693 27 8 -5.4869 5.3908 -6.5437 28 6 -3.1621 4.3813 -4.0154 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9081 0.5821 0.1472 35 1 2.1411 2.1695 -1.9924 36 1 -1.8943 3.9693 -1.6814 37 1 0.0604 5.3918 -4.1985 38 1 -0.7737 6.4012 -6.2787 39 1 -3.7479 7.2719 -7.0549 40 1 -2.4403 6.4792 -7.9659 41 1 -4.0023 5.6533 -7.7505 42 1 -5.9995 4.2688 -3.7419 43 1 -6.9558 3.9164 -5.2010 44 1 -5.5638 2.8900 -4.7798 45 1 -3.8289 3.8157 -3.3813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566805512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:05 Heat of formation + Delta-G solvation = -83.146984 kcal Electronic energy + Delta-G solvation = -27920.469612 eV Core-core repulsion = 23903.147744 eV Total energy + Delta-G solvation = -4017.321868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13584 -40.25453 -38.97219 -37.95070 -35.79972 -35.09337 -32.64773 -32.50864 -31.66498 -31.52474 -29.69759 -27.73474 -27.01010 -24.51358 -24.15728 -22.47178 -21.75824 -21.05959 -19.85868 -19.69953 -18.91431 -17.71570 -17.26398 -16.35118 -16.29934 -15.99628 -15.58583 -15.47888 -15.30755 -15.13176 -14.54855 -14.19311 -13.95993 -13.87996 -13.68513 -13.44119 -12.86596 -12.80501 -12.60810 -12.54649 -12.46750 -12.38270 -12.25633 -12.19902 -11.83878 -11.78379 -11.39317 -11.02088 -10.83877 -10.55888 -10.46324 -9.99984 -9.86133 -9.75236 -9.39138 -9.25903 -9.17177 -8.46316 -8.43434 -8.36170 -6.67891 -4.31795 0.34487 0.84552 1.63195 2.08679 2.46009 3.31083 3.33572 3.37987 3.52094 3.53210 3.69295 3.88521 4.35451 4.38395 4.60949 4.66737 4.79543 4.82524 4.93909 5.01289 5.03349 5.09004 5.16824 5.37168 5.45239 5.49324 5.64930 5.70889 5.88084 5.90689 5.95376 6.00851 6.08226 6.10389 6.25234 6.48351 6.58066 6.63550 6.73069 6.83500 6.88746 7.11551 7.18137 7.21149 7.44340 7.68318 8.12526 8.19606 8.41572 8.70340 9.35839 10.71367 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.002412 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.237979 B =11606.245735 C =12320.733826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.065 0.935 7 C 0.046 3.954 8 N -0.889 5.889 9 Si 1.033 2.967 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.270 1.270 13 N -0.660 5.660 14 C 0.496 3.504 15 O -0.531 6.531 16 C 0.509 3.491 17 O -0.504 6.504 18 N -0.653 5.653 19 C 0.127 3.873 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.036 4.036 23 C -0.120 4.120 24 C -0.163 4.163 25 C 0.396 3.604 26 C -0.202 4.202 27 O -0.454 6.454 28 C -0.088 4.088 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.272 0.728 35 H 0.406 0.594 36 H 0.424 0.576 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.498 7.952 -10.979 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.064 0.936 5 C -0.663 4.663 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.521 5.521 9 Si 0.860 3.140 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.308 5.308 14 C 0.275 3.725 15 O -0.410 6.410 16 C 0.291 3.709 17 O -0.377 6.377 18 N -0.301 5.301 19 C 0.033 3.967 20 C -0.097 4.097 21 C -0.136 4.136 22 C -0.037 4.037 23 C -0.176 4.176 24 C -0.165 4.165 25 C 0.275 3.725 26 C -0.259 4.259 27 O -0.330 6.330 28 C -0.109 4.109 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.262 0.738 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.381 7.774 -9.835 23.082 hybrid contribution 0.015 0.333 -1.486 1.523 sum -19.366 8.107 -11.321 23.852 Atomic orbital electron populations 1.21895 0.97390 0.99289 1.01585 1.22355 0.93792 0.99397 1.02279 1.19263 0.95361 0.88272 0.82703 0.93564 1.22032 0.89018 1.48201 1.07013 0.91648 1.25656 0.95892 0.91991 1.02686 1.70853 1.12758 1.40082 1.28377 0.84211 0.75896 0.77699 0.76149 1.20746 1.20563 1.19583 1.46213 1.14195 1.51581 1.18841 1.19611 0.84157 0.81515 0.87259 1.90736 1.55261 1.60051 1.34926 1.20927 0.81577 0.78912 0.89448 1.90759 1.54147 1.57169 1.35633 1.43176 1.18372 1.56010 1.12559 1.17589 0.93066 0.96941 0.89086 1.21525 1.00739 0.93225 0.94165 1.20982 0.94932 1.00756 0.96942 1.20240 0.93005 0.94520 0.95940 1.21066 1.01549 1.01423 0.93570 1.20079 0.95663 1.03760 0.96966 1.22421 0.87643 0.79162 0.83236 1.22268 1.00607 1.01015 1.01967 1.90500 1.76604 1.41020 1.24895 1.21209 0.94596 0.98900 0.96158 0.94012 0.94668 0.92538 0.92648 0.91015 0.91800 0.75867 0.73807 0.84102 0.84847 0.90644 0.92072 0.89260 0.88740 0.89642 0.88743 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.45 37.16 0.31 -2.35 16 2 C -0.14 -2.94 5.34 -26.73 -0.14 -3.08 16 3 C 0.25 5.57 1.87 -69.08 -0.13 5.44 16 4 H 0.05 1.11 6.21 -51.93 -0.32 0.79 16 5 C -0.63 -16.28 8.98 -34.44 -0.31 -16.59 16 6 H 0.07 1.81 7.96 -52.49 -0.42 1.39 16 7 C 0.05 1.24 5.29 -17.82 -0.09 1.14 16 8 N -0.89 -25.66 13.70 55.43 0.76 -24.90 16 9 Si 1.03 23.77 26.41 -169.99 -4.49 19.28 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.74 5.76 56.52 0.33 -5.41 16 13 N -0.66 -12.97 4.97 -55.39 -0.28 -13.25 16 14 C 0.50 8.78 6.28 -11.63 -0.07 8.71 16 15 O -0.53 -9.96 13.60 5.49 0.07 -9.88 16 16 C 0.51 7.73 7.70 -11.63 -0.09 7.64 16 17 O -0.50 -8.46 14.23 5.47 0.08 -8.38 16 18 N -0.65 -7.76 5.31 -10.33 -0.05 -7.82 16 19 C 0.13 1.42 6.20 -83.80 -0.52 0.90 16 20 C -0.08 -0.89 8.67 -39.27 -0.34 -1.23 16 21 C -0.12 -1.18 9.65 -39.68 -0.38 -1.56 16 22 C -0.04 -0.36 5.92 -104.12 -0.62 -0.98 16 23 C -0.12 -1.07 8.71 36.01 0.31 -0.75 16 24 C -0.16 -1.56 5.87 -105.09 -0.62 -2.18 16 25 C 0.40 3.53 7.16 -30.68 -0.22 3.31 16 26 C -0.20 -1.12 9.01 36.00 0.32 -0.79 16 27 O -0.45 -5.14 14.07 5.58 0.08 -5.06 16 28 C -0.09 -0.80 9.39 -38.88 -0.37 -1.16 16 29 H 0.04 0.75 5.75 -51.93 -0.30 0.45 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.07 7.60 -51.93 -0.39 0.67 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.57 5.02 -51.93 -0.26 1.31 16 34 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 35 H 0.41 7.73 8.00 -40.82 -0.33 7.41 16 36 H 0.42 4.26 8.30 -40.82 -0.34 3.93 16 37 H 0.14 1.78 6.59 -52.48 -0.35 1.43 16 38 H 0.13 1.07 8.05 -52.49 -0.42 0.65 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 41 H 0.09 0.89 5.89 -51.93 -0.31 0.58 16 42 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 43 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.14 0.87 6.99 -52.48 -0.37 0.50 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -30.52 368.45 -7.19 -37.71 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.97 Total: 10.28 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.95 Total: -3.54 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.43 Total: -45.97 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.23 Total: -23.32 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.49 Total: 19.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.52 -7.19 -37.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566805512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.439 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds