Wall clock time and date at job start Tue Mar 31 2020 17:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 H 1.08998 * 109.46777 * 305.52214 * 3 2 1 5 5 C 1.50694 * 109.47128 * 185.52258 * 3 2 1 6 6 H 1.08006 * 120.00048 * 275.07269 * 5 3 2 7 7 C 1.37876 * 120.00188 * 94.79117 * 5 3 2 8 8 N 1.31516 * 120.00387 * 186.45769 * 7 5 3 9 9 Si 1.86806 * 119.99926 * 6.45773 * 7 5 3 10 10 H 1.48502 * 109.46802 * 86.58538 * 9 7 5 11 11 H 1.48497 * 109.47265 * 206.58740 * 9 7 5 12 12 H 1.48505 * 109.46891 * 326.58925 * 9 7 5 13 13 N 1.46896 * 109.47136 * 65.52227 * 3 2 1 14 14 C 1.46901 * 111.00160 * 248.45107 * 13 3 2 15 15 C 1.53004 * 109.47346 * 183.10642 * 14 13 3 16 16 H 1.08997 * 109.46867 * 60.00157 * 15 14 13 17 17 O 1.42900 * 109.46778 * 299.99686 * 15 14 13 18 18 C 1.53000 * 109.46869 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.46890 * 185.00210 * 18 15 14 20 20 C 1.34525 * 124.45762 * 269.69567 * 19 18 15 21 21 O 1.21448 * 125.71169 * 0.03642 * 20 19 18 22 22 C 1.47810 * 108.58303 * 179.90495 * 20 19 18 23 23 C 1.38566 * 134.30315 * 180.12601 * 22 20 19 24 24 C 1.38609 * 119.72220 * 180.28656 * 23 22 20 25 25 C 1.38228 * 120.45826 * 359.95757 * 24 23 22 26 26 C 1.38606 * 120.46151 * 0.02562 * 25 24 23 27 27 C 1.38570 * 119.71803 * 0.02562 * 26 25 24 28 28 C 1.34519 * 124.46460 * 89.99464 * 19 18 15 29 29 O 1.21445 * 125.70906 * 359.94144 * 28 19 18 30 30 H 1.09001 * 109.46639 * 56.29599 * 1 2 3 31 31 H 1.08995 * 109.47454 * 176.29405 * 1 2 3 32 32 H 1.08998 * 109.47571 * 296.29898 * 1 2 3 33 33 H 1.08997 * 109.47205 * 239.99805 * 2 1 3 34 34 H 1.09004 * 109.46481 * 119.99685 * 2 1 3 35 35 H 0.96997 * 120.00277 * 179.97438 * 8 7 5 36 36 H 1.00899 * 110.99948 * 124.49876 * 13 3 2 37 37 H 1.09004 * 109.46877 * 303.10799 * 14 13 3 38 38 H 1.09000 * 109.47028 * 63.10118 * 14 13 3 39 39 H 0.96697 * 114.00109 * 300.00145 * 17 15 14 40 40 H 1.09005 * 109.46779 * 304.99543 * 18 15 14 41 41 H 1.08989 * 109.47480 * 64.99850 * 18 15 14 42 42 H 1.08007 * 120.13587 * 0.24351 * 23 22 20 43 43 H 1.08004 * 119.77127 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.76829 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.14440 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 -0.8364 5 6 3.5407 1.4447 -0.1367 6 1 4.1630 1.3329 0.7390 7 6 4.1195 1.5835 -1.3804 8 7 5.4215 1.4586 -1.5175 9 14 3.0543 1.9491 -2.8708 10 1 2.8594 3.4163 -2.9919 11 1 3.7214 1.4356 -4.0941 12 1 1.7351 1.2860 -2.7109 13 7 1.6622 2.0954 1.2605 14 6 0.6562 3.1410 1.0309 15 6 0.3457 3.8488 2.3513 16 1 1.2564 4.3009 2.7441 17 8 -0.1597 2.9001 3.2929 18 6 -0.7025 4.9373 2.1122 19 7 -0.9123 5.6934 3.3494 20 6 -1.8270 5.3826 4.2856 21 8 -2.5974 4.4448 4.2402 22 6 -1.7353 6.3715 5.3803 23 6 -2.4058 6.5529 6.5793 24 6 -2.0696 7.6178 7.4004 25 6 -1.0702 8.4986 7.0317 26 6 -0.3906 8.3295 5.8355 27 6 -0.7167 7.2700 5.0041 28 6 -0.2196 6.7932 3.6962 29 8 0.6659 7.3082 3.0438 30 1 -0.3633 0.5703 -0.8550 31 1 -0.3634 -1.0254 -0.0664 32 1 -0.3634 0.4553 0.9213 33 1 1.8934 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 5.8286 1.5559 -2.3925 36 1 2.4725 2.4703 1.7305 37 1 1.0417 3.8646 0.3126 38 1 -0.2545 2.6889 0.6380 39 1 -0.9711 2.4577 3.0086 40 1 -0.3545 5.6111 1.3292 41 1 -1.6411 4.4766 1.8044 42 1 -3.1877 5.8678 6.8724 43 1 -2.5921 7.7602 8.3349 44 1 -0.8170 9.3243 7.6801 45 1 0.3892 9.0210 5.5523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584789346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:49 Heat of formation + Delta-G solvation = -68.730703 kcal Electronic energy + Delta-G solvation = -28343.620399 eV Core-core repulsion = 24326.923667 eV Total energy + Delta-G solvation = -4016.696732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56175 -38.99374 -38.80135 -37.77150 -36.07984 -35.61508 -32.72382 -32.30610 -31.57535 -31.54093 -29.46734 -27.44383 -25.39022 -25.17517 -23.16094 -22.51193 -22.42080 -21.53187 -20.19285 -19.42608 -18.10404 -17.67944 -17.19253 -16.97786 -16.62090 -15.93616 -15.60590 -15.45463 -14.94538 -14.89410 -14.68845 -14.44112 -14.16835 -14.12047 -13.92237 -13.38174 -13.12132 -12.86200 -12.77825 -12.52968 -12.42026 -12.13181 -11.96867 -11.69638 -11.51798 -11.11091 -10.92285 -10.85344 -10.66228 -10.54257 -10.51351 -10.14058 -9.90921 -9.77866 -9.70233 -9.66699 -9.34898 -9.06307 -8.57234 -7.36226 -6.15125 -4.15853 -0.28467 0.53265 1.69734 2.06882 2.72832 3.18316 3.21809 3.29982 3.31465 3.32971 3.99856 4.17878 4.34657 4.39847 4.42872 4.57114 4.62048 4.76984 4.81839 4.96788 5.07250 5.16006 5.25284 5.31300 5.44827 5.50106 5.50273 5.60717 5.66496 5.72826 6.04345 6.08163 6.11049 6.12566 6.18954 6.27630 6.46283 6.59437 6.77028 6.97945 7.06829 7.10309 7.44024 7.44911 7.59987 7.83839 7.95677 8.36974 8.62716 8.93156 9.48914 10.97945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002708 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.287479 B =10336.593211 C =11081.231925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C 0.182 3.818 4 H 0.017 0.983 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.673 5.673 14 C 0.032 3.968 15 C 0.095 3.905 16 H 0.101 0.899 17 O -0.540 6.540 18 C 0.077 3.923 19 N -0.567 5.567 20 C 0.579 3.421 21 O -0.457 6.457 22 C -0.136 4.136 23 C -0.047 4.047 24 C -0.098 4.098 25 C -0.098 4.098 26 C -0.046 4.046 27 C -0.138 4.138 28 C 0.572 3.428 29 O -0.459 6.459 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.265 0.735 36 H 0.342 0.658 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.373 0.627 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.258 14.957 16.142 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.035 0.965 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.305 5.305 14 C -0.099 4.099 15 C 0.034 3.966 16 H 0.119 0.881 17 O -0.345 6.345 18 C -0.044 4.044 19 N -0.309 5.309 20 C 0.367 3.633 21 O -0.327 6.327 22 C -0.140 4.140 23 C -0.066 4.066 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.065 4.065 27 C -0.142 4.142 28 C 0.360 3.640 29 O -0.330 6.330 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.220 0.780 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.961 14.376 16.027 28.038 hybrid contribution -0.258 0.727 -1.831 1.987 sum -18.219 15.103 14.197 27.596 Atomic orbital electron populations 1.21818 0.98601 0.99360 1.00554 1.21624 0.92621 0.99120 1.00565 1.19635 0.95202 0.91186 0.86569 0.96469 1.21359 0.89689 1.50859 0.95116 0.90435 1.25046 0.94786 0.94341 0.98662 1.69914 1.09950 1.49153 1.24163 0.86915 0.81371 0.78956 0.82737 1.20338 1.21340 1.18682 1.60675 1.15556 1.28972 1.25271 1.22568 0.98311 0.94491 0.94524 1.22325 0.95476 0.87639 0.91132 0.88141 1.86601 1.46024 1.57075 1.44781 1.22647 1.02309 0.95470 0.83947 1.46410 1.35095 1.27484 1.21887 1.18252 0.79230 0.83790 0.82004 1.90787 1.36620 1.28220 1.77120 1.20626 0.99281 0.97249 0.96798 1.20815 0.97837 0.96946 0.90970 1.21469 0.96861 0.93634 0.99615 1.21464 0.95065 0.99328 0.95787 1.20828 0.98251 0.95101 0.92321 1.20606 0.99119 0.98262 0.96179 1.18396 0.80767 0.79426 0.85385 1.90840 1.26679 1.58359 1.57120 0.94670 0.94704 0.92613 0.93420 0.92511 0.92555 0.83987 0.94868 0.91358 0.77987 0.87653 0.88118 0.84018 0.84097 0.84090 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.26 37.16 0.34 -2.28 16 2 C -0.10 -2.18 5.59 -26.73 -0.15 -2.33 16 3 C 0.18 4.22 1.85 -68.87 -0.13 4.09 16 4 H 0.02 0.41 4.59 -51.93 -0.24 0.17 16 5 C -0.53 -14.67 8.69 -34.44 -0.30 -14.97 16 6 H 0.08 2.34 8.01 -52.48 -0.42 1.92 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.87 21.35 27.09 -169.99 -4.60 16.74 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.15 6.69 56.52 0.38 -5.77 16 13 N -0.67 -13.57 5.87 -107.95 -0.63 -14.20 16 14 C 0.03 0.53 4.90 -3.82 -0.02 0.51 16 15 C 0.10 1.37 3.39 -26.73 -0.09 1.28 16 16 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 17 O -0.54 -8.22 12.87 -35.23 -0.45 -8.68 16 18 C 0.08 0.92 5.39 -4.04 -0.02 0.90 16 19 N -0.57 -7.01 2.59 -117.62 -0.30 -7.32 16 20 C 0.58 7.08 7.74 -12.46 -0.10 6.99 16 21 O -0.46 -6.38 17.66 5.41 0.10 -6.28 16 22 C -0.14 -1.35 6.40 -104.84 -0.67 -2.02 16 23 C -0.05 -0.33 10.09 -39.32 -0.40 -0.72 16 24 C -0.10 -0.46 10.04 -39.45 -0.40 -0.85 16 25 C -0.10 -0.47 10.03 -39.45 -0.40 -0.86 16 26 C -0.05 -0.33 10.09 -39.32 -0.40 -0.73 16 27 C -0.14 -1.39 6.41 -104.83 -0.67 -2.06 16 28 C 0.57 7.25 8.02 -12.46 -0.10 7.15 16 29 O -0.46 -6.96 17.68 5.41 0.10 -6.86 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.95 7.35 -51.93 -0.38 0.57 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.34 7.30 8.02 -39.29 -0.31 6.99 16 37 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 1.04 7.25 -51.93 -0.38 0.67 16 39 H 0.37 4.86 9.04 45.56 0.41 5.27 16 40 H 0.11 1.20 7.97 -51.93 -0.41 0.79 16 41 H 0.10 1.06 7.96 -51.93 -0.41 0.64 16 42 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.14 0.25 8.06 -52.48 -0.42 -0.18 16 44 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 45 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -33.57 381.51 -8.40 -41.97 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.53 Total: 9.12 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.59 Total: -3.88 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.16 Total: -47.88 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.26 Total: -21.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.60 Total: 16.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.57 -8.40 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.759 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds