Wall clock time and date at job start Tue Mar 31 2020 17:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 H 1.08998 * 109.46777 * 305.52214 * 3 2 1 5 5 C 1.50694 * 109.47128 * 185.52258 * 3 2 1 6 6 H 1.08006 * 120.00048 * 275.07269 * 5 3 2 7 7 C 1.37876 * 120.00188 * 94.79117 * 5 3 2 8 8 N 1.31516 * 120.00387 * 186.45769 * 7 5 3 9 9 Si 1.86806 * 119.99926 * 6.45773 * 7 5 3 10 10 H 1.48502 * 109.46802 * 86.58538 * 9 7 5 11 11 H 1.48497 * 109.47265 * 206.58740 * 9 7 5 12 12 H 1.48505 * 109.46891 * 326.58925 * 9 7 5 13 13 N 1.46896 * 109.47136 * 65.52227 * 3 2 1 14 14 C 1.46901 * 111.00160 * 248.45107 * 13 3 2 15 15 C 1.53004 * 109.47346 * 183.10642 * 14 13 3 16 16 H 1.08997 * 109.46867 * 60.00157 * 15 14 13 17 17 O 1.42900 * 109.46778 * 299.99686 * 15 14 13 18 18 C 1.53000 * 109.46869 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.46890 * 185.00210 * 18 15 14 20 20 C 1.34525 * 124.45762 * 269.69567 * 19 18 15 21 21 O 1.21448 * 125.71169 * 0.03642 * 20 19 18 22 22 C 1.47810 * 108.58303 * 179.90495 * 20 19 18 23 23 C 1.38566 * 134.30315 * 180.12601 * 22 20 19 24 24 C 1.38609 * 119.72220 * 180.28656 * 23 22 20 25 25 C 1.38228 * 120.45826 * 359.95757 * 24 23 22 26 26 C 1.38606 * 120.46151 * 0.02562 * 25 24 23 27 27 C 1.38570 * 119.71803 * 0.02562 * 26 25 24 28 28 C 1.34519 * 124.46460 * 89.99464 * 19 18 15 29 29 O 1.21445 * 125.70906 * 359.94144 * 28 19 18 30 30 H 1.09001 * 109.46639 * 56.29599 * 1 2 3 31 31 H 1.08995 * 109.47454 * 176.29405 * 1 2 3 32 32 H 1.08998 * 109.47571 * 296.29898 * 1 2 3 33 33 H 1.08997 * 109.47205 * 239.99805 * 2 1 3 34 34 H 1.09004 * 109.46481 * 119.99685 * 2 1 3 35 35 H 0.96997 * 120.00277 * 179.97438 * 8 7 5 36 36 H 1.00899 * 110.99948 * 124.49876 * 13 3 2 37 37 H 1.09004 * 109.46877 * 303.10799 * 14 13 3 38 38 H 1.09000 * 109.47028 * 63.10118 * 14 13 3 39 39 H 0.96697 * 114.00109 * 300.00145 * 17 15 14 40 40 H 1.09005 * 109.46779 * 304.99543 * 18 15 14 41 41 H 1.08989 * 109.47480 * 64.99850 * 18 15 14 42 42 H 1.08007 * 120.13587 * 0.24351 * 23 22 20 43 43 H 1.08004 * 119.77127 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.76829 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.14440 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 -0.8364 5 6 3.5407 1.4447 -0.1367 6 1 4.1630 1.3329 0.7390 7 6 4.1195 1.5835 -1.3804 8 7 5.4215 1.4586 -1.5175 9 14 3.0543 1.9491 -2.8708 10 1 2.8594 3.4163 -2.9919 11 1 3.7214 1.4356 -4.0941 12 1 1.7351 1.2860 -2.7109 13 7 1.6622 2.0954 1.2605 14 6 0.6562 3.1410 1.0309 15 6 0.3457 3.8488 2.3513 16 1 1.2564 4.3009 2.7441 17 8 -0.1597 2.9001 3.2929 18 6 -0.7025 4.9373 2.1122 19 7 -0.9123 5.6934 3.3494 20 6 -1.8270 5.3826 4.2856 21 8 -2.5974 4.4448 4.2402 22 6 -1.7353 6.3715 5.3803 23 6 -2.4058 6.5529 6.5793 24 6 -2.0696 7.6178 7.4004 25 6 -1.0702 8.4986 7.0317 26 6 -0.3906 8.3295 5.8355 27 6 -0.7167 7.2700 5.0041 28 6 -0.2196 6.7932 3.6962 29 8 0.6659 7.3082 3.0438 30 1 -0.3633 0.5703 -0.8550 31 1 -0.3634 -1.0254 -0.0664 32 1 -0.3634 0.4553 0.9213 33 1 1.8934 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 5.8286 1.5559 -2.3925 36 1 2.4725 2.4703 1.7305 37 1 1.0417 3.8646 0.3126 38 1 -0.2545 2.6889 0.6380 39 1 -0.9711 2.4577 3.0086 40 1 -0.3545 5.6111 1.3292 41 1 -1.6411 4.4766 1.8044 42 1 -3.1877 5.8678 6.8724 43 1 -2.5921 7.7602 8.3349 44 1 -0.8170 9.3243 7.6801 45 1 0.3892 9.0210 5.5523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584789346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:48 Heat of formation + Delta-G solvation = -94.386739 kcal Electronic energy + Delta-G solvation = -28344.732928 eV Core-core repulsion = 24326.923667 eV Total energy + Delta-G solvation = -4017.809261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.40662 -39.78627 -39.73738 -38.97785 -37.52082 -36.75725 -34.43720 -33.59304 -32.94948 -32.10087 -30.66391 -29.05136 -26.47223 -26.18978 -24.50308 -23.68819 -23.21436 -22.77374 -21.27804 -20.92590 -19.32172 -18.82397 -18.48871 -17.97354 -17.52562 -17.29378 -16.62417 -16.51680 -16.35655 -15.83272 -15.60163 -15.40034 -15.29396 -15.15218 -15.01846 -15.00098 -14.76991 -14.17773 -13.76512 -13.70796 -13.47054 -13.28625 -13.22142 -12.97466 -12.82097 -12.69889 -12.45774 -12.31215 -12.04745 -11.82616 -11.69780 -11.56980 -11.45279 -11.35741 -11.09222 -10.79911 -10.54729 -10.20205 -10.15164 -9.04652 -8.35870 -6.41277 -1.00367 0.00664 0.99455 1.18662 1.28177 1.30338 1.41252 1.82078 2.27918 2.58604 2.64861 2.96963 3.17684 3.25374 3.47052 3.61461 3.74179 3.94167 3.97144 4.07582 4.19886 4.23264 4.24971 4.32847 4.43900 4.48323 4.50632 4.56957 4.65287 4.71116 4.84945 4.85576 4.91044 4.98508 5.22636 5.22984 5.28750 5.37128 5.42602 5.52515 5.54123 5.71839 5.77149 5.98302 6.07599 6.44415 6.51763 6.63535 6.74128 6.84513 7.27786 8.80967 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002708 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.287479 B =10336.593211 C =11081.231925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C 0.188 3.812 4 H 0.021 0.979 5 C -0.535 4.535 6 H 0.033 0.967 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.241 1.241 13 N -0.672 5.672 14 C 0.033 3.967 15 C 0.109 3.891 16 H 0.078 0.922 17 O -0.553 6.553 18 C 0.080 3.920 19 N -0.572 5.572 20 C 0.575 3.425 21 O -0.482 6.482 22 C -0.159 4.159 23 C -0.046 4.046 24 C -0.082 4.082 25 C -0.084 4.084 26 C -0.048 4.048 27 C -0.163 4.163 28 C 0.567 3.433 29 O -0.498 6.498 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.266 0.734 36 H 0.330 0.670 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.384 0.616 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.182 0.818 44 H 0.180 0.820 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.653 16.514 17.609 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 C 0.079 3.921 4 H 0.038 0.962 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.762 3.238 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.164 1.164 13 N -0.302 5.302 14 C -0.098 4.098 15 C 0.048 3.952 16 H 0.096 0.904 17 O -0.359 6.359 18 C -0.041 4.041 19 N -0.313 5.313 20 C 0.366 3.634 21 O -0.354 6.354 22 C -0.162 4.162 23 C -0.065 4.065 24 C -0.100 4.100 25 C -0.102 4.102 26 C -0.067 4.067 27 C -0.167 4.167 28 C 0.358 3.642 29 O -0.372 6.372 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.232 0.768 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.174 0.826 43 H 0.199 0.801 44 H 0.197 0.803 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.398 15.931 17.520 31.917 hybrid contribution 0.832 0.283 -2.067 2.246 sum -20.567 16.215 15.453 30.409 Atomic orbital electron populations 1.21702 0.95082 1.01095 1.01407 1.21543 0.95726 0.97446 0.99305 1.19533 0.92073 0.92647 0.87865 0.96172 1.21636 0.92079 1.49975 0.93684 0.94893 1.25941 0.96023 0.94247 1.02104 1.70068 1.12127 1.51158 1.25099 0.85859 0.80255 0.79289 0.78370 1.19364 1.21161 1.16406 1.60654 1.15514 1.30466 1.23550 1.22662 0.97768 0.93676 0.95652 1.22058 0.95536 0.87943 0.89681 0.90380 1.86578 1.46748 1.57454 1.45152 1.22560 1.02288 0.94904 0.84343 1.46482 1.35255 1.27495 1.22043 1.18685 0.78471 0.83813 0.82421 1.90756 1.37544 1.29366 1.77762 1.20585 1.00866 0.97092 0.97696 1.21182 0.97542 0.97832 0.89930 1.21972 0.96039 0.91810 1.00154 1.21947 0.93703 0.99854 0.94700 1.21169 0.98571 0.94185 0.92771 1.20537 1.00357 1.00201 0.95589 1.18924 0.79971 0.79097 0.86195 1.90803 1.28381 1.59491 1.58506 0.93793 0.92611 0.91715 0.94794 0.93834 0.92452 0.85291 0.95304 0.89241 0.76772 0.87227 0.86219 0.82633 0.80106 0.80263 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.26 71.98 0.67 -3.83 16 2 C -0.10 -4.33 5.59 30.59 0.17 -4.16 16 3 C 0.19 8.69 1.85 44.17 0.08 8.77 16 4 H 0.02 0.93 4.59 -2.39 -0.01 0.92 16 5 C -0.54 -30.64 8.69 25.60 0.22 -30.42 16 6 H 0.03 2.12 8.01 -2.91 -0.02 2.10 16 7 C 0.02 0.88 5.47 84.65 0.46 1.35 16 8 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 9 Si 0.94 44.09 27.09 68.60 1.86 45.95 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.24 -10.39 6.69 99.48 0.67 -9.73 16 13 N -0.67 -27.33 5.87 -495.46 -2.91 -30.24 16 14 C 0.03 1.06 4.90 86.30 0.42 1.49 16 15 C 0.11 3.15 3.39 30.60 0.10 3.25 16 16 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 17 O -0.55 -16.73 12.87 -148.98 -1.92 -18.65 16 18 C 0.08 1.91 5.39 86.38 0.47 2.38 16 19 N -0.57 -14.41 2.59 -762.97 -1.97 -16.38 16 20 C 0.58 14.09 7.74 86.82 0.67 14.76 16 21 O -0.48 -13.33 17.66 -3.55 -0.06 -13.39 16 22 C -0.16 -3.01 6.40 -20.00 -0.13 -3.14 16 23 C -0.05 -0.52 10.09 22.44 0.23 -0.29 16 24 C -0.08 -0.40 10.04 22.36 0.22 -0.17 16 25 C -0.08 -0.45 10.03 22.36 0.22 -0.22 16 26 C -0.05 -0.60 10.09 22.44 0.23 -0.37 16 27 C -0.16 -3.21 6.41 -20.00 -0.13 -3.34 16 28 C 0.57 14.89 8.02 86.82 0.70 15.59 16 29 O -0.50 -15.86 17.68 -3.54 -0.06 -15.92 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.03 7.35 -2.39 -0.02 2.01 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.33 14.75 8.02 -89.70 -0.72 14.03 16 37 H 0.03 0.97 8.10 -2.38 -0.02 0.95 16 38 H 0.09 2.53 7.25 -2.39 -0.02 2.51 16 39 H 0.38 9.60 9.04 -74.06 -0.67 8.93 16 40 H 0.11 2.51 7.97 -2.38 -0.02 2.49 16 41 H 0.12 2.38 7.96 -2.39 -0.02 2.36 16 42 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.18 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.18 -0.37 8.06 -2.91 -0.02 -0.40 16 45 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -77.38 381.51 -0.55 -77.93 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -0.40 Total: 28.27 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.61 Total: 1.64 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.58 Total: -105.82 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -2.04 Total: -47.96 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.86 Total: 45.95 kcal Total: -77.38 -0.55 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.456 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds