Wall clock time and date at job start Tue Mar 31 2020 17:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47494 * 2 1 4 4 H 1.08996 * 109.47264 * 179.25752 * 3 2 1 5 5 C 1.50703 * 109.47193 * 299.26080 * 3 2 1 6 6 H 1.08005 * 119.99845 * 119.99656 * 5 3 2 7 7 C 1.37875 * 120.00100 * 299.99878 * 5 3 2 8 8 N 1.31513 * 120.00328 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99633 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46915 * 90.00376 * 9 7 5 11 11 H 1.48499 * 109.47043 * 210.00206 * 9 7 5 12 12 H 1.48504 * 109.47647 * 330.00366 * 9 7 5 13 13 N 1.46909 * 109.46724 * 59.25641 * 3 2 1 14 14 C 1.46903 * 110.99437 * 85.94482 * 13 3 2 15 15 C 1.53007 * 109.46578 * 175.55111 * 14 13 3 16 16 H 1.08996 * 109.47084 * 304.99521 * 15 14 13 17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13 18 18 C 1.52997 * 109.46799 * 185.00008 * 15 14 13 19 19 N 1.46504 * 109.47343 * 180.02562 * 18 15 14 20 20 C 1.34524 * 124.45708 * 269.70057 * 19 18 15 21 21 O 1.21447 * 125.70990 * 0.02893 * 20 19 18 22 22 C 1.47811 * 108.57826 * 179.90205 * 20 19 18 23 23 C 1.38565 * 134.29716 * 180.12984 * 22 20 19 24 24 C 1.38613 * 119.71998 * 180.28389 * 23 22 20 25 25 C 1.38234 * 120.46065 * 359.95640 * 24 23 22 26 26 C 1.38612 * 120.45511 * 0.02562 * 25 24 23 27 27 C 1.38566 * 119.72167 * 0.02562 * 26 25 24 28 28 C 1.34525 * 124.46190 * 89.99215 * 19 18 15 29 29 O 1.21445 * 125.70759 * 359.94997 * 28 19 18 30 30 H 1.09004 * 109.47016 * 55.56057 * 1 2 3 31 31 H 1.08995 * 109.47113 * 295.56340 * 1 2 3 32 32 H 1.08998 * 109.47167 * 175.55563 * 1 2 3 33 33 H 1.09000 * 109.47197 * 119.99826 * 2 1 3 34 34 H 1.09000 * 109.47322 * 240.00019 * 2 1 3 35 35 H 0.96995 * 119.99831 * 180.02562 * 8 7 5 36 36 H 1.00901 * 110.99578 * 209.89525 * 13 3 2 37 37 H 1.08994 * 109.46864 * 295.54442 * 14 13 3 38 38 H 1.08994 * 109.47486 * 55.55129 * 14 13 3 39 39 H 0.96702 * 113.99922 * 59.99758 * 17 15 14 40 40 H 1.09006 * 109.46922 * 299.99521 * 18 15 14 41 41 H 1.08997 * 109.47938 * 59.99709 * 18 15 14 42 42 H 1.07997 * 120.14540 * 0.23265 * 23 22 20 43 43 H 1.08000 * 119.77493 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.77101 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.13697 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4425 0.0133 5 6 1.5528 2.1476 -1.2395 6 1 0.9307 3.0262 -1.1517 7 6 1.9010 1.6712 -2.4856 8 7 1.4754 2.2863 -3.5674 9 14 2.9775 0.1521 -2.6373 10 1 2.1198 -1.0592 -2.6878 11 1 3.7844 0.2394 -3.8809 12 1 3.8838 0.0683 -1.4639 13 7 1.5357 2.1401 1.1904 14 6 2.4175 1.9174 2.3441 15 6 1.9229 2.7459 3.5315 16 1 1.8476 3.7929 3.2377 17 8 0.6382 2.2724 3.9405 18 6 2.9095 2.6119 4.6931 19 7 2.4356 3.4047 5.8303 20 6 2.7575 4.6927 6.0470 21 8 3.4755 5.3723 5.3415 22 6 2.0887 5.1434 7.2857 23 6 2.0502 6.3392 7.9846 24 6 1.3074 6.4296 9.1514 25 6 0.6048 5.3358 9.6214 26 6 0.6338 4.1333 8.9325 27 6 1.3729 4.0279 7.7652 28 6 1.6259 2.9389 6.7983 29 8 1.1780 1.8121 6.8665 30 1 -0.3633 0.5812 -0.8476 31 1 -0.3633 0.4434 0.9270 32 1 -0.3633 -1.0246 -0.0796 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.7202 1.9508 -4.4439 36 1 1.4191 3.1259 1.0095 37 1 2.4082 0.8603 2.6097 38 1 3.4333 2.2189 2.0886 39 1 0.6301 1.3456 4.2162 40 1 2.9847 1.5648 4.9869 41 1 3.8894 2.9730 4.3812 42 1 2.5973 7.1970 7.6223 43 1 1.2772 7.3611 9.6971 44 1 0.0294 5.4188 10.5315 45 1 0.0832 3.2819 9.3046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584789347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:52 Heat of formation + Delta-G solvation = -84.717157 kcal Electronic energy + Delta-G solvation = -28296.994951 eV Core-core repulsion = 24279.604995 eV Total energy + Delta-G solvation = -4017.389956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.40463 -39.79020 -39.74300 -39.00673 -37.67384 -36.77313 -34.48695 -33.55167 -32.95564 -32.09862 -30.56219 -28.76129 -26.48282 -26.18917 -24.97444 -23.96443 -23.21635 -22.73584 -21.28504 -20.88026 -18.82336 -18.79351 -18.43027 -17.97721 -17.65485 -17.36122 -16.75624 -16.52241 -16.37570 -15.63807 -15.58694 -15.47232 -15.39003 -15.16244 -15.05064 -15.01354 -14.88730 -14.69157 -13.81815 -13.70506 -13.43167 -13.22236 -13.07810 -12.93366 -12.73917 -12.58242 -12.48725 -12.30236 -12.09629 -11.88538 -11.70082 -11.45198 -11.40827 -11.26108 -10.97903 -10.74866 -10.56892 -10.19961 -10.15083 -9.11119 -8.31181 -6.33944 -1.00117 0.00878 0.99731 1.18787 1.29173 1.32252 1.42464 1.82472 2.29525 2.58836 2.65185 3.04178 3.14721 3.24120 3.45454 3.61707 3.71820 3.92251 3.96097 4.07791 4.20111 4.22981 4.24605 4.31635 4.36258 4.46495 4.49332 4.50769 4.65659 4.73742 4.85651 4.89034 4.93759 4.98741 5.15293 5.23128 5.29015 5.33809 5.38381 5.54028 5.62830 5.71986 5.76137 5.97861 6.07543 6.45818 6.51904 6.62317 6.73187 6.82641 7.31256 8.85491 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.679402 B =11329.175176 C =11765.331706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.113 4.113 3 C 0.190 3.810 4 H -0.005 1.005 5 C -0.511 4.511 6 H 0.037 0.963 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.300 1.300 12 H -0.250 1.250 13 N -0.668 5.668 14 C 0.033 3.967 15 C 0.108 3.892 16 H 0.082 0.918 17 O -0.556 6.556 18 C 0.080 3.920 19 N -0.571 5.571 20 C 0.568 3.432 21 O -0.497 6.497 22 C -0.163 4.163 23 C -0.048 4.048 24 C -0.085 4.085 25 C -0.083 4.083 26 C -0.047 4.047 27 C -0.159 4.159 28 C 0.576 3.424 29 O -0.483 6.483 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.332 0.668 37 H 0.086 0.914 38 H 0.038 0.962 39 H 0.383 0.617 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.152 0.848 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 4.678 33.084 33.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.013 0.987 5 C -0.549 4.549 6 H 0.055 0.945 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.774 3.226 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.174 1.174 13 N -0.298 5.298 14 C -0.097 4.097 15 C 0.047 3.953 16 H 0.100 0.900 17 O -0.362 6.362 18 C -0.041 4.041 19 N -0.312 5.312 20 C 0.360 3.640 21 O -0.371 6.371 22 C -0.167 4.167 23 C -0.067 4.067 24 C -0.102 4.102 25 C -0.100 4.100 26 C -0.065 4.065 27 C -0.163 4.163 28 C 0.367 3.633 29 O -0.356 6.356 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.232 0.768 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.170 0.830 43 H 0.197 0.803 44 H 0.198 0.802 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.337 4.474 32.516 32.850 hybrid contribution 1.442 -0.567 -1.512 2.165 sum 2.779 3.907 31.004 31.373 Atomic orbital electron populations 1.21357 0.95154 0.99209 1.01686 1.21719 0.97762 0.96937 0.98660 1.19455 0.92206 0.92240 0.88080 0.98706 1.21264 1.31029 1.12100 0.90543 0.94496 1.25722 0.97081 0.99987 0.95331 1.70036 1.47563 1.42642 0.98502 0.85875 0.79335 0.80148 0.77197 1.19243 1.22764 1.17378 1.60398 1.49207 1.15830 1.04393 1.22636 0.94701 1.00972 0.91414 1.22091 0.83512 0.98321 0.91372 0.90039 1.86582 1.29726 1.32655 1.87266 1.22551 0.99215 0.97777 0.84527 1.46460 1.46189 1.13487 1.25067 1.18888 0.79003 0.80906 0.85246 1.90796 1.35632 1.58607 1.52056 1.20542 1.02328 0.97387 0.96427 1.21169 0.96664 0.95061 0.93765 1.21952 0.93393 1.00933 0.93945 1.21969 0.97088 0.90692 1.00281 1.21179 0.94532 1.00127 0.90709 1.20585 1.03395 0.93626 0.98687 1.18680 0.76317 0.87348 0.80974 1.90755 1.48867 1.20837 1.75154 0.95069 0.91957 0.93638 0.92016 0.95105 0.92567 0.85094 0.89545 0.94355 0.76830 0.86430 0.86927 0.83016 0.80269 0.80177 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.52 71.98 0.69 -4.20 16 2 C -0.11 -4.79 5.29 30.59 0.16 -4.63 16 3 C 0.19 8.77 1.90 44.17 0.08 8.86 16 4 H 0.00 -0.21 6.77 -2.39 -0.02 -0.23 16 5 C -0.51 -29.04 7.87 25.60 0.20 -28.84 16 6 H 0.04 2.35 7.85 -2.91 -0.02 2.32 16 7 C 0.02 0.96 5.45 84.65 0.46 1.42 16 8 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 9 Si 0.95 45.49 24.38 68.60 1.67 47.16 16 10 H -0.27 -12.27 6.86 99.48 0.68 -11.59 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.25 -11.10 6.53 99.48 0.65 -10.45 16 13 N -0.67 -26.70 5.57 -495.42 -2.76 -29.46 16 14 C 0.03 1.01 5.17 86.30 0.45 1.46 16 15 C 0.11 2.98 3.38 30.60 0.10 3.09 16 16 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 17 O -0.56 -16.67 12.61 -148.98 -1.88 -18.55 16 18 C 0.08 1.81 5.43 86.38 0.47 2.28 16 19 N -0.57 -13.83 2.55 -762.96 -1.95 -15.78 16 20 C 0.57 14.30 8.02 86.82 0.70 15.00 16 21 O -0.50 -15.07 17.67 -3.55 -0.06 -15.14 16 22 C -0.16 -3.10 6.40 -20.00 -0.13 -3.22 16 23 C -0.05 -0.56 10.09 22.44 0.23 -0.33 16 24 C -0.08 -0.41 10.04 22.36 0.22 -0.19 16 25 C -0.08 -0.38 10.04 22.36 0.22 -0.16 16 26 C -0.05 -0.52 10.09 22.44 0.23 -0.29 16 27 C -0.16 -2.94 6.40 -20.00 -0.13 -3.07 16 28 C 0.58 13.75 7.57 86.82 0.66 14.41 16 29 O -0.48 -13.14 17.54 -3.54 -0.06 -13.20 16 30 H 0.03 1.50 7.09 -2.39 -0.02 1.48 16 31 H 0.06 2.50 7.73 -2.39 -0.02 2.48 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.23 7.62 -2.39 -0.02 2.21 16 34 H 0.03 1.37 3.26 -2.39 -0.01 1.36 16 35 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.33 14.20 8.13 -89.69 -0.73 13.47 16 37 H 0.09 2.38 7.62 -2.39 -0.02 2.36 16 38 H 0.04 1.15 7.94 -2.39 -0.02 1.13 16 39 H 0.38 9.71 9.05 -74.06 -0.67 9.04 16 40 H 0.12 2.23 7.96 -2.38 -0.02 2.22 16 41 H 0.11 2.37 7.96 -2.39 -0.02 2.35 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 44 H 0.18 -0.52 8.06 -2.91 -0.02 -0.54 16 45 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -77.01 373.23 -0.56 -77.57 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.44 Total: 25.21 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.61 Total: 1.58 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.41 Total: -104.63 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -2.00 Total: -46.89 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -77.01 -0.56 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.145 kcal (2) G-P(sol) polarization free energy of solvation -77.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds