Wall clock time and date at job start Tue Mar 31 2020 17:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 H 1.08995 * 109.47417 * 185.17843 * 3 2 1 5 5 C 1.50701 * 109.46893 * 305.17770 * 3 2 1 6 6 H 1.07997 * 119.99837 * 120.00181 * 5 3 2 7 7 C 1.37875 * 120.00225 * 299.99866 * 5 3 2 8 8 N 1.31508 * 120.00079 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99867 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46928 * 89.99786 * 9 7 5 11 11 H 1.48494 * 109.47040 * 210.00120 * 9 7 5 12 12 H 1.48503 * 109.46833 * 330.00438 * 9 7 5 13 13 N 1.46896 * 109.47165 * 65.17744 * 3 2 1 14 14 C 1.46901 * 111.00481 * 85.90124 * 13 3 2 15 15 C 1.53001 * 109.47484 * 174.83280 * 14 13 3 16 16 H 1.08992 * 109.46971 * 60.00263 * 15 14 13 17 17 O 1.42904 * 109.46873 * 300.00207 * 15 14 13 18 18 C 1.52999 * 109.46773 * 180.02562 * 15 14 13 19 19 N 1.46502 * 109.46834 * 185.00121 * 18 15 14 20 20 C 1.34525 * 124.45754 * 269.69739 * 19 18 15 21 21 O 1.21440 * 125.71087 * 0.03144 * 20 19 18 22 22 C 1.47814 * 108.57742 * 179.90481 * 20 19 18 23 23 C 1.38567 * 134.29645 * 180.12328 * 22 20 19 24 24 C 1.38611 * 119.71844 * 180.28856 * 23 22 20 25 25 C 1.38227 * 120.46170 * 359.95448 * 24 23 22 26 26 C 1.38618 * 120.45765 * 0.02562 * 25 24 23 27 27 C 1.38564 * 119.71985 * 359.97438 * 26 25 24 28 28 C 1.34520 * 124.46179 * 89.99568 * 19 18 15 29 29 O 1.21448 * 125.71307 * 359.94356 * 28 19 18 30 30 H 1.09001 * 109.46913 * 294.85819 * 1 2 3 31 31 H 1.08996 * 109.47467 * 174.85323 * 1 2 3 32 32 H 1.09002 * 109.47123 * 54.85411 * 1 2 3 33 33 H 1.09001 * 109.47302 * 119.99728 * 2 1 3 34 34 H 1.09000 * 109.47377 * 239.99651 * 2 1 3 35 35 H 0.97004 * 119.99950 * 180.02562 * 8 7 5 36 36 H 1.00911 * 110.99985 * 321.95116 * 13 3 2 37 37 H 1.08998 * 109.46976 * 294.83834 * 14 13 3 38 38 H 1.09004 * 109.46501 * 54.83205 * 14 13 3 39 39 H 0.96704 * 113.99556 * 299.99695 * 17 15 14 40 40 H 1.09007 * 109.46778 * 304.99509 * 18 15 14 41 41 H 1.08997 * 109.47508 * 64.99712 * 18 15 14 42 42 H 1.08002 * 120.14077 * 0.24394 * 23 22 20 43 43 H 1.08006 * 119.77214 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.77393 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.13836 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0927 5 6 1.4357 2.1889 -1.1614 6 1 0.8267 3.0629 -0.9834 7 6 1.6604 1.7562 -2.4510 8 7 1.1335 2.4079 -3.4645 9 14 2.7146 0.2450 -2.7588 10 1 1.8542 -0.9653 -2.7671 11 1 3.3969 0.3764 -4.0712 12 1 3.7305 0.1227 -1.6826 13 7 1.6551 2.0980 1.2570 14 6 2.6439 1.8365 2.3115 15 6 2.2785 2.6369 3.5632 16 1 1.2896 2.3373 3.9101 17 8 2.2718 4.0315 3.2516 18 6 3.3087 2.3649 4.6611 19 7 2.8949 3.0358 5.8960 20 6 3.2476 4.2886 6.2366 21 8 3.9481 5.0313 5.5791 22 6 2.6372 4.6108 7.5437 23 6 2.6477 5.7241 8.3685 24 6 1.9543 5.6970 9.5684 25 6 1.2523 4.5679 9.9467 26 6 1.2325 3.4469 9.1315 27 6 1.9210 3.4596 7.9291 28 6 2.1170 2.4783 6.8413 29 8 1.6527 1.3566 6.8065 30 1 -0.3633 0.4320 0.9325 31 1 -0.3634 -1.0235 -0.0922 32 1 -0.3633 0.5916 -0.8403 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.2913 2.1032 -4.3718 36 1 0.7324 1.8102 1.5471 37 1 2.6490 0.7727 2.5490 38 1 3.6328 2.1361 1.9645 39 1 3.1216 4.3680 2.9358 40 1 3.3779 1.2913 4.8366 41 1 4.2813 2.7455 4.3492 42 1 3.1945 6.6091 8.0781 43 1 1.9623 6.5641 10.2122 44 1 0.7156 4.5590 10.8838 45 1 0.6826 2.5674 9.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584789348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:57 Heat of formation + Delta-G solvation = -82.997338 kcal Electronic energy + Delta-G solvation = -28273.008755 eV Core-core repulsion = 24255.693376 eV Total energy + Delta-G solvation = -4017.315379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.40060 -39.78344 -39.75064 -39.07786 -37.80279 -36.77541 -34.46383 -33.52576 -32.84300 -32.09749 -30.47973 -28.80712 -26.55165 -26.18692 -25.03522 -23.94754 -23.21045 -22.71502 -21.44097 -20.92008 -18.82336 -18.73349 -18.39097 -17.97648 -17.55963 -17.10341 -17.01959 -16.46825 -16.34931 -15.98931 -15.58697 -15.53708 -15.38487 -15.16140 -15.01342 -14.95161 -14.84149 -14.48644 -14.05506 -13.71700 -13.43097 -13.22082 -13.12010 -12.94020 -12.72033 -12.57520 -12.49134 -12.33846 -12.17672 -11.74396 -11.69370 -11.47137 -11.43620 -11.28515 -11.15241 -10.70607 -10.58003 -10.19898 -10.14983 -8.98997 -8.24068 -6.23899 -0.99962 0.00938 0.99841 1.19425 1.29193 1.33551 1.43146 1.82602 2.32978 2.59011 2.65196 3.10355 3.14216 3.24231 3.47917 3.61789 3.75579 3.95697 3.97037 4.07852 4.17387 4.20216 4.23587 4.28158 4.31829 4.36171 4.43527 4.50243 4.51147 4.64846 4.85663 4.87223 4.89938 4.97904 5.05917 5.12906 5.23206 5.25942 5.29085 5.54362 5.55837 5.71607 5.72065 6.03240 6.07934 6.52296 6.65406 6.70164 6.80176 6.82454 7.39028 8.93678 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.002463 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.322243 B =11364.828604 C =11790.745632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C 0.192 3.808 4 H 0.028 0.972 5 C -0.485 4.485 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.953 5.953 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.676 5.676 14 C 0.032 3.968 15 C 0.107 3.893 16 H 0.085 0.915 17 O -0.559 6.559 18 C 0.081 3.919 19 N -0.572 5.572 20 C 0.573 3.427 21 O -0.485 6.485 22 C -0.160 4.160 23 C -0.049 4.049 24 C -0.083 4.083 25 C -0.084 4.084 26 C -0.046 4.046 27 C -0.163 4.163 28 C 0.570 3.430 29 O -0.494 6.494 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.334 0.666 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.382 0.618 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 1.900 33.387 33.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.082 3.918 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.050 0.950 7 C -0.185 4.185 8 N -0.594 5.594 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.173 1.173 13 N -0.307 5.307 14 C -0.098 4.098 15 C 0.046 3.954 16 H 0.103 0.897 17 O -0.365 6.365 18 C -0.040 4.040 19 N -0.313 5.313 20 C 0.363 3.637 21 O -0.358 6.358 22 C -0.164 4.164 23 C -0.067 4.067 24 C -0.101 4.101 25 C -0.102 4.102 26 C -0.065 4.065 27 C -0.166 4.166 28 C 0.361 3.639 29 O -0.368 6.368 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.230 0.770 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.170 0.830 43 H 0.197 0.803 44 H 0.198 0.802 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.880 2.224 32.768 33.071 hybrid contribution 0.697 -1.564 -1.376 2.197 sum 4.578 0.660 31.391 31.730 Atomic orbital electron populations 1.21575 0.95249 1.00588 1.01723 1.22436 0.97832 0.99405 0.99953 1.19481 0.95052 0.89101 0.88167 0.95365 1.21096 1.29872 1.11317 0.90119 0.95041 1.25708 0.97067 0.99893 0.95823 1.70048 1.47420 1.42587 0.99352 0.85925 0.79826 0.80161 0.76875 1.19362 1.22945 1.17317 1.60332 1.04727 1.62944 1.02743 1.22590 0.97267 0.98214 0.91766 1.22120 0.98806 0.82388 0.92044 0.89680 1.86572 1.39346 1.22791 1.87783 1.22563 0.99742 0.99969 0.81753 1.46483 1.47644 1.16182 1.20979 1.18748 0.78630 0.80382 0.85897 1.90768 1.35300 1.51853 1.57848 1.20584 1.02527 0.97664 0.95613 1.21173 0.96706 0.96077 0.92762 1.21961 0.93434 0.99947 0.94716 1.21959 0.96882 0.91029 1.00318 1.21178 0.94764 1.00518 0.90024 1.20551 1.04011 0.94446 0.97611 1.18831 0.76257 0.86132 0.82633 1.90785 1.47830 1.19521 1.78666 0.92482 0.92562 0.93854 0.91551 0.94291 0.92785 0.84694 0.93304 0.90409 0.76975 0.86398 0.86886 0.82961 0.80251 0.80183 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.40 71.98 0.68 -4.58 16 2 C -0.16 -6.37 5.22 30.59 0.16 -6.21 16 3 C 0.19 8.78 1.93 44.17 0.09 8.87 16 4 H 0.03 1.33 6.76 -2.39 -0.02 1.31 16 5 C -0.49 -27.88 7.83 25.60 0.20 -27.68 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.67 5.42 84.66 0.46 1.13 16 8 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 9 Si 0.94 45.22 24.32 68.60 1.67 46.88 16 10 H -0.27 -12.21 6.92 99.48 0.69 -11.52 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -10.95 6.53 99.48 0.65 -10.30 16 13 N -0.68 -27.18 6.07 -495.45 -3.01 -30.19 16 14 C 0.03 0.98 5.17 86.30 0.45 1.42 16 15 C 0.11 3.00 3.46 30.59 0.11 3.11 16 16 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 17 O -0.56 -18.32 12.87 -148.98 -1.92 -20.24 16 18 C 0.08 1.82 5.39 86.38 0.47 2.29 16 19 N -0.57 -13.91 2.59 -762.97 -1.97 -15.88 16 20 C 0.57 14.25 7.74 86.82 0.67 14.92 16 21 O -0.48 -14.17 17.66 -3.53 -0.06 -14.23 16 22 C -0.16 -3.04 6.40 -20.00 -0.13 -3.16 16 23 C -0.05 -0.57 10.09 22.44 0.23 -0.34 16 24 C -0.08 -0.40 10.03 22.36 0.22 -0.18 16 25 C -0.08 -0.39 10.04 22.36 0.22 -0.16 16 26 C -0.05 -0.51 10.09 22.44 0.23 -0.28 16 27 C -0.16 -3.02 6.40 -20.00 -0.13 -3.15 16 28 C 0.57 13.88 8.02 86.82 0.70 14.57 16 29 O -0.49 -14.11 17.68 -3.55 -0.06 -14.18 16 30 H 0.06 2.01 6.63 -2.39 -0.02 2.00 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 2.03 6.85 -2.39 -0.02 2.01 16 33 H 0.07 2.26 7.50 -2.39 -0.02 2.24 16 34 H 0.04 1.66 3.42 -2.39 -0.01 1.65 16 35 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.33 13.11 6.70 -89.68 -0.60 12.51 16 37 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 38 H 0.08 2.31 7.93 -2.38 -0.02 2.29 16 39 H 0.38 11.14 9.04 -74.05 -0.67 10.47 16 40 H 0.12 2.32 7.97 -2.38 -0.02 2.30 16 41 H 0.11 2.28 7.96 -2.39 -0.02 2.26 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.18 -0.45 8.06 -2.91 -0.02 -0.47 16 44 H 0.18 -0.52 8.06 -2.91 -0.02 -0.54 16 45 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -79.13 371.54 -0.75 -79.88 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.30 Total: 27.74 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 4.61 Total: 0.57 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.68 Total: -106.42 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.04 Total: -48.65 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.88 kcal Total: -79.13 -0.75 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584789348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.122 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds