Wall clock time and date at job start Tue Mar 31 2020 17:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47616 * 2 1 4 4 N 1.46499 * 109.47373 * 120.00357 * 2 1 3 5 5 C 1.46499 * 119.99651 * 304.92172 * 4 2 1 6 6 C 1.50701 * 109.47436 * 269.99769 * 5 4 2 7 7 H 1.07994 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00157 * 179.97438 * 6 5 4 9 9 N 1.31504 * 119.99902 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99830 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99863 * 10 8 6 12 12 H 1.48500 * 109.46776 * 210.00045 * 10 8 6 13 13 H 1.48503 * 109.47380 * 329.99606 * 10 8 6 14 14 C 1.34780 * 120.00250 * 124.92462 * 4 2 1 15 15 O 1.21587 * 119.99625 * 185.65237 * 14 4 2 16 16 C 1.47569 * 119.99806 * 5.64840 * 14 4 2 17 17 C 1.39541 * 120.68013 * 54.30210 * 16 14 4 18 18 C 1.39938 * 118.14323 * 179.97438 * 17 16 14 19 19 C 1.39872 * 119.88608 * 359.78945 * 18 17 16 20 20 N 1.32130 * 119.96420 * 0.35279 * 19 18 17 21 21 C 1.32196 * 122.36729 * 359.79760 * 20 19 18 22 22 O 1.35228 * 119.50282 * 179.97438 * 21 20 19 23 23 C 1.50612 * 121.28251 * 180.72791 * 19 18 17 24 24 C 1.52600 * 111.23850 * 337.05607 * 23 19 18 25 25 C 1.53435 * 109.41578 * 54.86483 * 24 23 19 26 26 C 1.47258 * 119.76074 * 179.77185 * 18 17 16 27 27 O 1.21284 * 121.17096 * 348.62313 * 26 18 17 28 28 H 1.09000 * 109.47102 * 300.00114 * 1 2 3 29 29 H 1.09003 * 109.46870 * 59.99622 * 1 2 3 30 30 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47476 * 240.00199 * 2 1 3 32 32 H 1.08999 * 109.47731 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46880 * 300.00429 * 3 2 1 34 34 H 1.09000 * 109.46524 * 59.99535 * 3 2 1 35 35 H 1.09002 * 109.47045 * 30.00198 * 5 4 2 36 36 H 1.09004 * 109.47357 * 149.99756 * 5 4 2 37 37 H 0.97007 * 120.00283 * 180.02562 * 9 8 6 38 38 H 1.08007 * 120.93247 * 359.97438 * 17 16 14 39 39 H 0.96700 * 113.99744 * 269.97710 * 22 21 20 40 40 H 1.09011 * 109.13304 * 216.60825 * 23 19 18 41 41 H 1.08997 * 109.13140 * 97.50831 * 23 19 18 42 42 H 1.09000 * 109.47617 * 294.87980 * 24 23 19 43 43 H 1.08999 * 109.47966 * 174.85220 * 24 23 19 44 44 H 1.09000 * 109.88308 * 55.43934 * 25 24 23 45 45 H 1.09000 * 109.87901 * 176.51621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5778 -0.2561 2.5240 6 6 2.5250 0.7914 3.0498 7 1 3.3704 1.1027 2.4542 8 6 2.3118 1.3531 4.2908 9 7 3.1387 2.2669 4.7498 10 14 0.8491 0.8152 5.3206 11 1 1.2435 -0.3288 6.1813 12 1 0.4020 1.9455 6.1738 13 1 -0.2613 0.4015 4.4255 14 6 2.8730 -1.7258 1.0749 15 8 3.1980 -2.3640 2.0574 16 6 3.4142 -2.0844 -0.2503 17 6 4.0623 -1.1310 -1.0365 18 6 4.5555 -1.5291 -2.2842 19 6 4.3949 -2.8526 -2.7071 20 7 3.7721 -3.7223 -1.9315 21 6 3.2865 -3.3932 -0.7468 22 8 2.6586 -4.3302 -0.0008 23 6 4.9275 -3.3189 -4.0365 24 6 5.0993 -2.1511 -5.0036 25 6 5.9840 -1.0780 -4.3555 26 6 5.2411 -0.5507 -3.1452 27 8 5.2122 0.6354 -2.8940 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.5742 0.1635 2.4545 36 1 1.5683 -1.1102 3.2012 37 1 2.9889 2.6619 5.6230 38 1 4.1801 -0.1142 -0.6918 39 1 1.7063 -4.3857 -0.1592 40 1 4.2321 -4.0397 -4.4670 41 1 5.8927 -3.8021 -3.8850 42 1 4.1232 -1.7255 -5.2365 43 1 5.5699 -2.5050 -5.9209 44 1 6.9325 -1.5169 -4.0460 45 1 6.1625 -0.2681 -5.0627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588103947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:05 Heat of formation + Delta-G solvation = -74.554925 kcal Electronic energy + Delta-G solvation = -29653.167734 eV Core-core repulsion = 25636.218445 eV Total energy + Delta-G solvation = -4016.949289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35403 -39.64863 -38.78092 -37.42205 -36.10053 -35.53661 -33.16478 -32.60648 -31.10607 -30.41963 -29.10186 -27.83702 -26.88128 -24.66885 -24.08890 -22.56910 -22.01579 -21.62127 -20.14003 -18.94145 -18.30077 -17.45989 -17.22014 -16.83316 -16.36831 -15.94429 -15.44935 -15.04941 -14.93243 -14.48272 -14.41484 -14.25863 -13.94678 -13.89687 -13.48662 -13.37679 -13.26459 -12.65059 -12.50798 -12.32368 -12.23686 -12.03275 -11.94929 -11.73185 -11.61156 -11.46863 -11.45095 -11.04750 -10.94677 -10.62088 -10.47065 -10.23573 -10.13669 -9.93416 -9.70314 -9.50577 -9.24052 -8.91785 -8.59674 -7.81692 -6.09916 -4.08510 0.15637 0.77257 2.02921 3.04701 3.13120 3.27423 3.33092 3.35815 3.44056 3.61572 3.79311 4.06961 4.28708 4.37869 4.46441 4.50908 4.65164 4.68482 4.98383 5.02958 5.07461 5.11199 5.22100 5.23968 5.35332 5.39058 5.42213 5.51158 5.56227 5.68170 5.70758 5.82126 5.89241 6.02742 6.08979 6.19543 6.25041 6.45398 6.70326 6.90812 6.94845 7.21703 7.24800 7.30278 7.55768 7.57955 8.11045 8.43665 8.78391 8.94151 9.49730 11.03021 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003883 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.444040 B = 7209.808823 C = 7927.982250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.579 5.579 5 C 0.214 3.786 6 C -0.527 4.527 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.557 3.443 15 O -0.515 6.515 16 C -0.194 4.194 17 C 0.027 3.973 18 C -0.241 4.241 19 C 0.215 3.785 20 N -0.515 5.515 21 C 0.387 3.613 22 O -0.462 6.462 23 C -0.077 4.077 24 C -0.113 4.113 25 C -0.164 4.164 26 C 0.405 3.595 27 O -0.443 6.443 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.159 0.841 39 H 0.405 0.595 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -9.007 -22.519 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.310 5.310 5 C 0.094 3.906 6 C -0.566 4.566 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.342 3.658 15 O -0.391 6.391 16 C -0.201 4.201 17 C 0.002 3.998 18 C -0.244 4.244 19 C 0.076 3.924 20 N -0.235 5.235 21 C 0.207 3.793 22 O -0.270 6.270 23 C -0.115 4.115 24 C -0.151 4.151 25 C -0.201 4.201 26 C 0.281 3.719 27 O -0.316 6.316 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.176 0.824 39 H 0.264 0.736 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.254 -9.562 -21.646 23.665 hybrid contribution -1.011 0.621 0.982 1.540 sum -1.265 -8.941 -20.664 22.551 Atomic orbital electron populations 1.22145 0.95118 1.01805 1.02802 1.21124 0.94431 0.94419 0.87469 1.22211 1.01546 0.95226 1.02817 1.47984 1.44288 1.30312 1.08453 1.19720 0.95806 0.96092 0.78941 1.21319 1.11889 1.20465 1.02903 0.90452 1.24833 0.96234 0.94646 0.97151 1.69887 1.36895 1.27476 1.19079 0.86904 0.83402 0.78651 0.81062 1.19907 1.21097 1.19082 1.17637 0.80149 0.81228 0.86803 1.90811 1.58447 1.51655 1.38160 1.21314 1.06188 0.94010 0.98566 1.22113 0.87430 0.99991 0.90283 1.21118 1.08442 0.96680 0.98168 1.21417 0.89223 0.87309 0.94477 1.67037 1.13643 1.37496 1.05321 1.19188 0.90080 0.84469 0.85570 1.84724 1.25921 1.56232 1.60098 1.20494 1.02716 0.98845 0.89410 1.21526 1.00710 0.94422 0.98418 1.22344 1.00165 1.00861 0.96777 1.22465 0.77118 0.87643 0.84700 1.90602 1.52610 1.18158 1.70262 0.91116 0.91857 0.92909 0.90996 0.92554 0.92895 0.89561 0.94683 0.94387 0.92548 0.82375 0.73579 0.88436 0.88428 0.90784 0.89272 0.87660 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.07 37.16 0.34 -1.88 16 2 C 0.13 2.10 2.55 -67.93 -0.17 1.92 16 3 C -0.16 -2.72 8.47 37.16 0.31 -2.40 16 4 N -0.58 -11.73 2.39 -168.67 -0.40 -12.14 16 5 C 0.21 5.10 3.83 -5.19 -0.02 5.08 16 6 C -0.53 -14.67 8.41 -34.44 -0.29 -14.96 16 7 H 0.08 2.36 7.83 -52.49 -0.41 1.94 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 10 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.56 11.67 6.82 -12.45 -0.08 11.59 16 15 O -0.51 -13.00 16.34 2.75 0.04 -12.95 16 16 C -0.19 -3.28 4.59 -104.73 -0.48 -3.76 16 17 C 0.03 0.42 7.41 -38.46 -0.28 0.13 16 18 C -0.24 -3.02 5.82 -104.98 -0.61 -3.63 16 19 C 0.21 2.39 6.70 -81.90 -0.55 1.84 16 20 N -0.52 -6.89 10.23 -8.81 -0.09 -6.98 16 21 C 0.39 5.90 7.75 -16.52 -0.13 5.77 16 22 O -0.46 -6.78 12.76 -19.92 -0.25 -7.03 16 23 C -0.08 -0.51 5.90 -28.13 -0.17 -0.67 16 24 C -0.11 -0.56 5.89 -26.71 -0.16 -0.71 16 25 C -0.16 -1.09 6.19 -27.27 -0.17 -1.26 16 26 C 0.40 4.61 6.88 -30.26 -0.21 4.40 16 27 O -0.44 -6.58 17.29 5.55 0.10 -6.48 16 28 H 0.07 1.08 6.52 -51.93 -0.34 0.74 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.04 5.21 -51.92 -0.27 0.77 16 32 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.70 6.92 -51.93 -0.36 1.34 16 35 H 0.04 0.79 5.24 -51.93 -0.27 0.52 16 36 H 0.04 0.98 6.78 -51.93 -0.35 0.62 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.16 2.62 6.00 -52.48 -0.32 2.30 16 39 H 0.40 3.77 9.06 45.56 0.41 4.19 16 40 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -36.52 364.81 -7.00 -43.52 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.23 Total: 2.97 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.77 Total: 3.46 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.28 Total: -45.60 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.11 Total: -26.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.52 -7.00 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588103947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.037 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds