Wall clock time and date at job start Tue Mar 31 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47616 * 2 1 4 4 N 1.46499 * 109.47373 * 120.00357 * 2 1 3 5 5 C 1.46499 * 119.99651 * 304.92172 * 4 2 1 6 6 C 1.50701 * 109.47436 * 269.99769 * 5 4 2 7 7 H 1.07994 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00157 * 179.97438 * 6 5 4 9 9 N 1.31504 * 119.99902 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99830 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99863 * 10 8 6 12 12 H 1.48500 * 109.46776 * 210.00045 * 10 8 6 13 13 H 1.48503 * 109.47380 * 329.99606 * 10 8 6 14 14 C 1.34780 * 120.00250 * 124.92462 * 4 2 1 15 15 O 1.21587 * 119.99625 * 185.65237 * 14 4 2 16 16 C 1.47569 * 119.99806 * 5.64840 * 14 4 2 17 17 C 1.39541 * 120.68013 * 54.30210 * 16 14 4 18 18 C 1.39938 * 118.14323 * 179.97438 * 17 16 14 19 19 C 1.39872 * 119.88608 * 359.78945 * 18 17 16 20 20 N 1.32130 * 119.96420 * 0.35279 * 19 18 17 21 21 C 1.32196 * 122.36729 * 359.79760 * 20 19 18 22 22 O 1.35228 * 119.50282 * 179.97438 * 21 20 19 23 23 C 1.50612 * 121.28251 * 180.72791 * 19 18 17 24 24 C 1.52600 * 111.23850 * 337.05607 * 23 19 18 25 25 C 1.53435 * 109.41578 * 54.86483 * 24 23 19 26 26 C 1.47258 * 119.76074 * 179.77185 * 18 17 16 27 27 O 1.21284 * 121.17096 * 348.62313 * 26 18 17 28 28 H 1.09000 * 109.47102 * 300.00114 * 1 2 3 29 29 H 1.09003 * 109.46870 * 59.99622 * 1 2 3 30 30 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47476 * 240.00199 * 2 1 3 32 32 H 1.08999 * 109.47731 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46880 * 300.00429 * 3 2 1 34 34 H 1.09000 * 109.46524 * 59.99535 * 3 2 1 35 35 H 1.09002 * 109.47045 * 30.00198 * 5 4 2 36 36 H 1.09004 * 109.47357 * 149.99756 * 5 4 2 37 37 H 0.97007 * 120.00283 * 180.02562 * 9 8 6 38 38 H 1.08007 * 120.93247 * 359.97438 * 17 16 14 39 39 H 0.96700 * 113.99744 * 269.97710 * 22 21 20 40 40 H 1.09011 * 109.13304 * 216.60825 * 23 19 18 41 41 H 1.08997 * 109.13140 * 97.50831 * 23 19 18 42 42 H 1.09000 * 109.47617 * 294.87980 * 24 23 19 43 43 H 1.08999 * 109.47966 * 174.85220 * 24 23 19 44 44 H 1.09000 * 109.88308 * 55.43934 * 25 24 23 45 45 H 1.09000 * 109.87901 * 176.51621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5778 -0.2561 2.5240 6 6 2.5250 0.7914 3.0498 7 1 3.3704 1.1027 2.4542 8 6 2.3118 1.3531 4.2908 9 7 3.1387 2.2669 4.7498 10 14 0.8491 0.8152 5.3206 11 1 1.2435 -0.3288 6.1813 12 1 0.4020 1.9455 6.1738 13 1 -0.2613 0.4015 4.4255 14 6 2.8730 -1.7258 1.0749 15 8 3.1980 -2.3640 2.0574 16 6 3.4142 -2.0844 -0.2503 17 6 4.0623 -1.1310 -1.0365 18 6 4.5555 -1.5291 -2.2842 19 6 4.3949 -2.8526 -2.7071 20 7 3.7721 -3.7223 -1.9315 21 6 3.2865 -3.3932 -0.7468 22 8 2.6586 -4.3302 -0.0008 23 6 4.9275 -3.3189 -4.0365 24 6 5.0993 -2.1511 -5.0036 25 6 5.9840 -1.0780 -4.3555 26 6 5.2411 -0.5507 -3.1452 27 8 5.2122 0.6354 -2.8940 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.5742 0.1635 2.4545 36 1 1.5683 -1.1102 3.2012 37 1 2.9889 2.6619 5.6230 38 1 4.1801 -0.1142 -0.6918 39 1 1.7063 -4.3857 -0.1592 40 1 4.2321 -4.0397 -4.4670 41 1 5.8927 -3.8021 -3.8850 42 1 4.1232 -1.7255 -5.2365 43 1 5.5699 -2.5050 -5.9209 44 1 6.9325 -1.5169 -4.0460 45 1 6.1625 -0.2681 -5.0627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588103947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:04 Heat of formation + Delta-G solvation = -103.686772 kcal Electronic energy + Delta-G solvation = -29654.430986 eV Core-core repulsion = 25636.218445 eV Total energy + Delta-G solvation = -4018.212540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.46369 -40.91350 -40.04242 -38.48275 -37.70529 -36.31080 -34.97287 -34.05845 -32.73556 -31.51468 -30.17482 -29.34611 -28.16568 -25.83299 -25.20336 -24.27116 -23.02631 -22.78767 -21.23785 -20.21099 -19.49517 -19.12608 -18.51665 -18.40758 -17.53172 -17.08795 -16.88621 -16.31181 -16.03918 -15.82641 -15.64199 -15.28740 -15.14125 -15.01068 -14.86870 -14.60211 -14.54448 -14.18731 -13.96038 -13.69637 -13.45259 -13.18903 -13.09854 -12.99586 -12.85619 -12.77126 -12.45705 -12.39477 -12.09872 -12.00844 -11.95462 -11.86268 -11.63109 -11.43903 -11.05367 -10.82717 -10.73258 -10.63288 -10.07457 -9.55826 -8.33732 -6.37809 -0.88516 -0.39581 1.06415 1.30277 1.34919 1.42324 1.58559 1.97566 2.20905 2.29571 2.34933 2.88809 2.99690 3.16017 3.31107 3.37039 3.74143 3.80068 3.90414 3.91193 4.06086 4.12964 4.21601 4.23207 4.42650 4.51115 4.62449 4.68200 4.76201 4.76811 4.79303 4.83326 4.91521 4.93850 4.97341 5.00543 5.18658 5.25636 5.27641 5.34357 5.40387 5.46971 5.54817 6.21596 6.28498 6.37805 6.49773 6.54932 6.63107 7.09909 7.27208 8.82898 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003883 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.444040 B = 7209.808823 C = 7927.982250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 C -0.153 4.153 4 N -0.581 5.581 5 C 0.224 3.776 6 C -0.528 4.528 7 H 0.032 0.968 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.941 3.059 11 H -0.278 1.278 12 H -0.276 1.276 13 H -0.236 1.236 14 C 0.555 3.445 15 O -0.572 6.572 16 C -0.220 4.220 17 C 0.020 3.980 18 C -0.246 4.246 19 C 0.234 3.766 20 N -0.516 5.516 21 C 0.393 3.607 22 O -0.477 6.477 23 C -0.077 4.077 24 C -0.104 4.104 25 C -0.156 4.156 26 C 0.404 3.596 27 O -0.488 6.488 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.135 0.865 39 H 0.425 0.575 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 -10.981 -26.415 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 C -0.211 4.211 4 N -0.311 5.311 5 C 0.103 3.897 6 C -0.566 4.566 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.159 1.159 14 C 0.342 3.658 15 O -0.452 6.452 16 C -0.227 4.227 17 C -0.005 4.005 18 C -0.249 4.249 19 C 0.095 3.905 20 N -0.236 5.236 21 C 0.213 3.787 22 O -0.288 6.288 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.193 4.193 26 C 0.283 3.717 27 O -0.365 6.365 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.288 0.712 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.448 -11.537 -25.611 28.127 hybrid contribution -0.514 1.239 2.058 2.457 sum -1.962 -10.298 -23.553 25.781 Atomic orbital electron populations 1.22125 0.92468 1.03029 1.03673 1.21416 0.96439 0.93293 0.86476 1.22123 0.99902 0.96187 1.02853 1.48042 1.44156 1.30406 1.08497 1.19389 0.95722 0.94025 0.80573 1.21488 1.11242 1.21197 1.02694 0.95013 1.25782 0.99596 0.94569 0.98540 1.70045 1.39377 1.29217 1.19828 0.85807 0.80252 0.78109 0.79392 1.20354 1.20100 1.15874 1.18240 0.79197 0.80477 0.87896 1.90755 1.60288 1.53658 1.40452 1.20908 1.08979 0.95568 0.97230 1.21969 0.88102 0.98754 0.91694 1.21422 1.08228 0.98111 0.97156 1.22331 0.86424 0.86104 0.95613 1.67267 1.14185 1.37543 1.04565 1.19191 0.89834 0.83599 0.86042 1.84662 1.27754 1.55798 1.60608 1.20795 1.03875 1.00030 0.86717 1.21586 1.00729 0.92874 0.99005 1.22444 1.00508 1.01933 0.94402 1.23239 0.76305 0.86642 0.85527 1.90596 1.54347 1.19952 1.71565 0.92642 0.88520 0.91509 0.88962 0.95135 0.89394 0.92728 0.92481 0.96142 0.92358 0.84754 0.71191 0.86504 0.86088 0.90808 0.85351 0.85575 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.07 71.98 0.65 -3.35 16 2 C 0.13 4.12 2.55 44.99 0.11 4.23 16 3 C -0.15 -5.41 8.47 71.98 0.61 -4.80 16 4 N -0.58 -24.56 2.39 -805.82 -1.92 -26.49 16 5 C 0.22 11.04 3.83 85.63 0.33 11.37 16 6 C -0.53 -31.13 8.41 25.60 0.22 -30.91 16 7 H 0.03 2.10 7.83 -2.91 -0.02 2.08 16 8 C 0.01 0.78 5.47 84.66 0.46 1.24 16 9 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 10 Si 0.94 44.78 27.47 68.60 1.88 46.66 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 14 C 0.55 24.51 6.82 86.70 0.59 25.10 16 15 O -0.57 -30.62 16.34 -1.56 -0.03 -30.65 16 16 C -0.22 -7.69 4.59 -19.93 -0.09 -7.79 16 17 C 0.02 0.65 7.41 23.00 0.17 0.82 16 18 C -0.25 -5.93 5.82 -20.10 -0.12 -6.05 16 19 C 0.23 4.55 6.70 42.88 0.29 4.84 16 20 N -0.52 -12.69 10.23 -294.91 -3.02 -15.71 16 21 C 0.39 11.83 7.75 85.21 0.66 12.49 16 22 O -0.48 -13.88 12.76 -82.67 -1.05 -14.94 16 23 C -0.08 -0.62 5.90 29.69 0.18 -0.45 16 24 C -0.10 -0.46 5.89 30.61 0.18 -0.28 16 25 C -0.16 -1.46 6.19 30.24 0.19 -1.27 16 26 C 0.40 8.66 6.88 28.31 0.19 8.85 16 27 O -0.49 -14.70 17.29 -3.04 -0.05 -14.75 16 28 H 0.05 1.61 6.52 -2.39 -0.02 1.59 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.67 5.21 -2.38 -0.01 2.65 16 32 H 0.03 1.20 6.74 -2.39 -0.02 1.19 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 2.27 6.92 -2.39 -0.02 2.25 16 35 H 0.06 2.56 5.24 -2.39 -0.01 2.55 16 36 H 0.02 1.09 6.78 -2.38 -0.02 1.07 16 37 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 38 H 0.13 4.89 6.00 -2.91 -0.02 4.88 16 39 H 0.42 7.64 9.06 -74.06 -0.67 6.97 16 40 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -87.77 364.81 1.05 -86.72 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.32 Total: 15.17 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.62 Total: 14.05 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.64 Total: -102.26 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.13 Total: -60.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -87.77 1.05 -86.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588103947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal (2) G-P(sol) polarization free energy of solvation -87.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds