Wall clock time and date at job start Tue Mar 31 2020 18:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47372 * 2 1 4 4 O 1.42902 * 109.47527 * 182.05045 * 3 2 1 5 5 C 1.53002 * 109.47161 * 239.99958 * 2 1 3 6 6 O 1.42900 * 109.46940 * 59.99973 * 5 2 1 7 7 C 1.52998 * 109.47205 * 120.00473 * 2 1 3 8 8 N 1.46506 * 109.46878 * 298.09641 * 7 2 1 9 9 C 1.34773 * 120.00186 * 174.97171 * 8 7 2 10 10 O 1.21669 * 119.99776 * 5.72006 * 9 8 7 11 11 C 1.46891 * 120.00203 * 185.72642 * 9 8 7 12 12 C 1.36120 * 125.43969 * 173.66373 * 11 9 8 13 13 C 1.41692 * 107.74878 * 179.87762 * 12 11 9 14 14 C 1.40029 * 133.35191 * 180.15381 * 13 12 11 15 15 C 1.36579 * 119.83311 * 180.27066 * 14 13 12 16 16 C 1.38854 * 120.60000 * 359.97438 * 15 14 13 17 17 C 1.37851 * 120.63174 * 359.97438 * 16 15 14 18 18 C 1.39079 * 119.81666 * 0.02562 * 17 16 15 19 19 N 1.37832 * 133.16767 * 180.02562 * 18 17 16 20 20 C 1.36899 * 125.61931 * 359.97438 * 19 18 17 21 21 H 1.08000 * 120.00218 * 133.98607 * 20 19 18 22 22 C 1.39009 * 119.99602 * 313.99050 * 20 19 18 23 23 N 1.31353 * 119.99801 * 159.43449 * 22 20 19 24 24 Si 1.86799 * 120.00230 * 339.43481 * 22 20 19 25 25 H 1.48496 * 109.47253 * 96.27131 * 24 22 20 26 26 H 1.48509 * 109.46813 * 216.26851 * 24 22 20 27 27 H 1.48493 * 109.47301 * 336.26550 * 24 22 20 28 28 H 1.08996 * 109.47007 * 296.98851 * 1 2 3 29 29 H 1.09005 * 109.46941 * 56.98760 * 1 2 3 30 30 H 1.08994 * 109.47156 * 176.98531 * 1 2 3 31 31 H 1.09004 * 109.47190 * 302.04877 * 3 2 1 32 32 H 1.08995 * 109.47139 * 62.04619 * 3 2 1 33 33 H 0.96695 * 114.00669 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47584 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47308 * 300.00393 * 5 2 1 36 36 H 0.96704 * 113.99878 * 179.97438 * 6 5 2 37 37 H 1.09003 * 109.47068 * 178.10635 * 7 2 1 38 38 H 1.08993 * 109.47466 * 58.09733 * 7 2 1 39 39 H 0.96998 * 119.99777 * 354.70104 * 8 7 2 40 40 H 1.08001 * 126.12064 * 359.97438 * 12 11 9 41 41 H 1.08003 * 120.08073 * 0.24751 * 14 13 12 42 42 H 1.07991 * 119.69869 * 180.02562 * 15 14 13 43 43 H 1.08000 * 119.68679 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.08741 * 179.97438 * 17 16 15 45 45 H 0.97002 * 120.00128 * 185.01828 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4682 1.4428 -0.0482 5 6 2.0400 -0.7213 -1.2493 6 8 1.5636 -0.0476 -2.4160 7 6 2.0400 -0.7213 1.2492 8 7 1.5894 -0.0048 2.4450 9 6 1.8346 -0.5144 3.6683 10 8 2.5189 -1.5135 3.7851 11 6 1.2755 0.1364 4.8606 12 6 1.3486 -0.3468 6.1311 13 6 0.6922 0.5761 6.9826 14 6 0.4577 0.6117 8.3627 15 6 -0.2284 1.6590 8.9085 16 6 -0.6965 2.6918 8.1070 17 6 -0.4771 2.6795 6.7462 18 6 0.2190 1.6237 6.1674 19 7 0.5874 1.3351 4.8710 20 6 0.3154 2.1077 3.7740 21 1 1.0925 2.3145 3.0531 22 6 -0.9610 2.6261 3.5883 23 7 -1.1407 3.6630 2.8022 24 14 -2.4205 1.8481 4.4565 25 1 -2.7114 2.5982 5.7047 26 1 -3.6074 1.8915 3.5650 27 1 -2.1032 0.4363 4.7899 28 1 -0.3633 0.4663 0.9157 29 1 -0.3633 0.5599 -0.8618 30 1 -0.3633 -1.0262 -0.0540 31 1 1.6470 1.9668 -0.8711 32 1 1.7070 1.9455 0.9077 33 1 3.8616 2.3261 -0.0505 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7490 -1.2493 36 1 1.8493 -0.4509 -3.2472 37 1 3.1295 -0.7508 1.2323 38 1 1.6491 -1.7386 1.2664 39 1 1.1182 0.8384 2.3563 40 1 1.8234 -1.2678 6.4356 41 1 0.8181 -0.1872 8.9938 42 1 -0.4077 1.6845 9.9731 43 1 -1.2369 3.5130 8.5542 44 1 -0.8455 3.4872 6.1310 45 1 -2.0182 4.0699 2.7291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593736899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:07 Heat of formation + Delta-G solvation = -74.752420 kcal Electronic energy + Delta-G solvation = -29764.462001 eV Core-core repulsion = 25747.504148 eV Total energy + Delta-G solvation = -4016.957853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.85064 -39.30401 -38.00877 -36.20518 -36.08237 -34.93609 -33.68251 -32.32910 -31.40080 -29.33470 -28.45702 -26.79459 -25.79343 -25.52563 -24.94823 -22.71316 -21.19941 -20.26665 -19.49394 -18.86562 -18.43543 -17.48725 -17.08462 -16.65536 -15.93480 -15.57456 -15.29715 -15.06994 -14.78540 -14.47983 -14.41385 -14.11751 -13.80146 -13.43780 -13.36915 -13.19761 -13.04754 -12.77372 -12.41697 -12.32132 -12.26298 -12.08183 -11.98847 -11.49099 -11.19250 -11.08767 -11.02327 -10.92894 -10.54346 -10.36442 -10.27558 -10.00415 -9.96025 -9.69375 -9.55506 -9.46277 -8.80706 -8.47726 -7.42030 -7.07910 -6.96898 -4.81170 1.56750 2.43131 2.80810 2.95516 3.05683 3.13728 3.64324 3.78286 4.01854 4.10258 4.30085 4.51497 4.56185 4.71298 4.82855 4.85098 5.22032 5.40817 5.49311 5.53544 5.62881 5.66470 5.70983 5.83049 5.87776 5.89377 5.92345 6.14659 6.14850 6.19429 6.21502 6.25236 6.38663 6.52663 6.57018 6.72425 6.79417 7.02189 7.07997 7.19722 7.29761 7.46889 7.59331 7.59505 7.63429 7.79236 8.01251 8.21008 8.51019 8.88885 8.95361 9.94711 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004416 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.278556 B = 6339.332035 C = 7347.138531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C 0.087 3.913 4 O -0.572 6.572 5 C 0.094 3.906 6 O -0.568 6.568 7 C 0.133 3.867 8 N -0.722 5.722 9 C 0.594 3.406 10 O -0.556 6.556 11 C -0.010 4.010 12 C -0.158 4.158 13 C -0.126 4.126 14 C -0.075 4.075 15 C -0.160 4.160 16 C -0.128 4.128 17 C -0.103 4.103 18 C 0.069 3.931 19 N -0.278 5.278 20 C -0.380 4.380 21 H 0.119 0.881 22 C 0.092 3.908 23 N -0.819 5.819 24 Si 0.869 3.131 25 H -0.248 1.248 26 H -0.278 1.278 27 H -0.252 1.252 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.378 0.622 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.376 0.624 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.419 0.581 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -2.783 -4.420 5.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C 0.009 3.991 4 O -0.377 6.377 5 C 0.016 3.984 6 O -0.373 6.373 7 C 0.008 3.992 8 N -0.383 5.383 9 C 0.382 3.618 10 O -0.436 6.436 11 C -0.124 4.124 12 C -0.185 4.185 13 C -0.131 4.131 14 C -0.094 4.094 15 C -0.180 4.180 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.045 4.045 19 N 0.056 4.944 20 C -0.506 4.506 21 H 0.136 0.864 22 C -0.125 4.125 23 N -0.447 5.447 24 Si 0.693 3.307 25 H -0.172 1.172 26 H -0.204 1.204 27 H -0.176 1.176 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.222 0.778 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.266 0.734 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.246 -3.406 -4.486 5.768 hybrid contribution -0.706 0.523 -0.222 0.907 sum 0.539 -2.882 -4.708 5.546 Atomic orbital electron populations 1.21788 0.92602 1.02361 1.03196 1.20784 0.96885 0.95266 0.93732 1.22153 0.80707 0.95567 1.00691 1.86374 1.20021 1.33638 1.97693 1.21986 0.97957 0.93906 0.84600 1.86455 1.77455 1.57490 1.15869 1.21105 0.99797 0.95098 0.83176 1.46705 1.59422 1.27671 1.04509 1.17175 0.79149 0.83248 0.82217 1.90724 1.39405 1.26642 1.86780 1.20305 1.07958 0.89253 0.94881 1.20483 1.06783 1.00865 0.90410 1.18030 1.04880 0.96896 0.93333 1.20186 0.98708 0.97922 0.92612 1.20361 1.02973 0.95907 0.98723 1.20609 1.02426 0.99138 0.92681 1.20160 1.00069 0.97293 0.94741 1.18459 1.03862 0.97716 0.84417 1.40226 1.36890 1.12982 1.04268 1.19037 0.97889 1.30817 1.02851 0.86450 1.25456 0.98512 0.93891 0.94609 1.69647 1.26041 1.15813 1.33187 0.86844 0.80908 0.82685 0.80306 1.17249 1.20435 1.17577 0.91378 0.91522 0.92251 0.92700 0.92751 0.77581 0.92520 0.93697 0.77797 0.91023 0.91755 0.73359 0.84364 0.87069 0.87230 0.86947 0.86469 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.17 37.16 0.30 -1.85 16 2 C -0.07 -0.98 0.45 -154.51 -0.07 -1.05 16 3 C 0.09 1.33 5.58 37.15 0.21 1.54 16 4 O -0.57 -8.24 12.35 -35.23 -0.43 -8.67 16 5 C 0.09 1.16 5.75 37.16 0.21 1.37 16 6 O -0.57 -6.64 12.40 -35.23 -0.44 -7.08 16 7 C 0.13 2.24 4.42 -4.04 -0.02 2.22 16 8 N -0.72 -14.34 4.85 -61.55 -0.30 -14.64 16 9 C 0.59 13.32 7.76 -12.76 -0.10 13.22 16 10 O -0.56 -13.18 16.86 5.22 0.09 -13.09 16 11 C -0.01 -0.23 6.77 -82.25 -0.56 -0.78 16 12 C -0.16 -3.49 10.55 -39.03 -0.41 -3.90 16 13 C -0.13 -2.75 6.16 -106.89 -0.66 -3.41 16 14 C -0.08 -1.40 10.06 -39.51 -0.40 -1.80 16 15 C -0.16 -2.77 9.97 -39.95 -0.40 -3.17 16 16 C -0.13 -2.36 10.02 -39.50 -0.40 -2.76 16 17 C -0.10 -2.21 7.15 -39.41 -0.28 -2.49 16 18 C 0.07 1.60 5.18 -83.84 -0.43 1.16 16 19 N -0.28 -6.63 2.33 -56.08 -0.13 -6.76 16 20 C -0.38 -9.09 8.09 -15.00 -0.12 -9.22 16 21 H 0.12 2.87 6.19 -52.49 -0.33 2.55 16 22 C 0.09 2.17 4.87 -17.47 -0.09 2.08 16 23 N -0.82 -19.54 13.95 55.50 0.77 -18.77 16 24 Si 0.87 19.36 24.73 -169.99 -4.20 15.16 16 25 H -0.25 -5.35 6.04 56.52 0.34 -5.01 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.07 1.18 7.02 -51.93 -0.36 0.82 16 29 H 0.07 0.99 7.77 -51.93 -0.40 0.58 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.83 7.74 -51.93 -0.40 0.43 16 32 H 0.05 0.95 6.18 -51.93 -0.32 0.63 16 33 H 0.38 4.02 9.12 45.56 0.42 4.43 16 34 H 0.06 0.70 7.63 -51.93 -0.40 0.31 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.60 9.12 45.56 0.42 3.01 16 37 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.42 8.56 2.06 -40.82 -0.08 8.47 16 40 H 0.14 2.78 8.06 -52.49 -0.42 2.36 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.55 6.39 -52.48 -0.34 2.22 16 45 H 0.29 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -29.20 360.65 -6.77 -35.98 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -4.36 Total: 21.27 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.20 Total: -8.83 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.35 Total: -40.17 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.78 Total: -28.84 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.20 Total: 15.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.20 -6.77 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.777 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds