Wall clock time and date at job start Tue Mar 31 2020 16:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00132 * 2 1 4 4 C 1.53002 * 109.47314 * 125.00353 * 3 2 1 5 5 N 1.46496 * 109.47260 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99932 * 179.97438 * 5 4 3 7 7 O 1.21352 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.49352 * 119.99633 * 180.02562 * 6 5 4 9 9 O 1.21366 * 120.00406 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99707 * 180.02562 * 8 6 5 11 11 C 1.39717 * 120.00276 * 185.27462 * 10 8 6 12 12 C 1.38984 * 120.04902 * 213.34660 * 11 10 8 13 13 C 1.38110 * 120.03321 * 180.02562 * 12 11 10 14 14 C 1.38230 * 120.12982 * 359.68142 * 13 12 11 15 15 C 1.38774 * 120.09420 * 0.59761 * 14 13 12 16 16 O 1.35895 * 120.01966 * 179.70029 * 15 14 13 17 17 C 1.42910 * 116.99682 * 359.72501 * 16 15 14 18 18 C 1.52999 * 109.46581 * 180.02562 * 17 16 15 19 19 C 1.50711 * 109.46553 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99827 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46932 * 90.00550 * 23 21 19 25 25 H 1.48499 * 109.47081 * 209.99956 * 23 21 19 26 26 H 1.48502 * 109.47242 * 330.00207 * 23 21 19 27 27 C 1.38610 * 119.96227 * 359.42156 * 15 14 13 28 28 H 1.07998 * 120.00209 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99891 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00019 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47304 * 5.00158 * 3 2 1 32 32 H 1.09003 * 109.47470 * 245.00032 * 3 2 1 33 33 H 1.09001 * 109.47094 * 59.99676 * 4 3 2 34 34 H 1.09003 * 109.46590 * 300.00218 * 4 3 2 35 35 H 0.96997 * 120.00353 * 0.02562 * 5 4 3 36 36 H 0.97008 * 119.99768 * 5.27861 * 10 8 6 37 37 H 1.07996 * 119.98909 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93353 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.95230 * 180.29499 * 14 13 12 40 40 H 1.09003 * 109.46580 * 299.99856 * 17 16 15 41 41 H 1.08993 * 109.47222 * 59.99916 * 17 16 15 42 42 H 1.08994 * 109.47499 * 299.99237 * 18 17 16 43 43 H 1.08997 * 109.47328 * 60.00410 * 18 17 16 44 44 H 0.96999 * 119.99956 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.06040 * 180.25507 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7672 2.6020 1.1819 6 6 4.6835 2.8511 2.1384 7 8 4.9025 2.0240 2.9990 8 6 5.4294 4.1450 2.1390 9 8 5.2108 4.9720 1.2781 10 7 6.3461 4.3939 3.0952 11 6 6.9641 5.6452 3.1618 12 6 8.2830 5.7482 3.5877 13 6 8.8934 6.9853 3.6540 14 6 8.1971 8.1229 3.2909 15 6 6.8781 8.0269 2.8703 16 8 6.1931 9.1469 2.5195 17 6 6.8911 10.3904 2.6136 18 6 5.9649 11.5289 2.1815 19 6 6.7008 12.8404 2.2814 20 1 7.7262 12.8597 2.6196 21 6 6.0645 14.0155 1.9419 22 7 6.7065 15.1599 2.0295 23 14 4.2906 13.9820 1.3576 24 1 3.3824 14.1178 2.5246 25 1 4.0582 15.1066 0.4161 26 1 4.0209 12.6949 0.6676 27 6 6.2616 6.7873 2.8027 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1130 35 1 3.5919 3.2632 0.4943 36 1 6.5769 3.7041 3.7371 37 1 8.8310 4.8605 3.8671 38 1 9.9182 7.0636 3.9856 39 1 8.6787 9.0884 3.3393 40 1 7.2085 10.5517 3.6439 41 1 7.7656 10.3663 1.9636 42 1 5.6472 11.3678 1.1515 43 1 5.0907 11.5529 2.8320 44 1 6.2590 15.9866 1.7903 45 1 5.2365 6.7103 2.4717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595115466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:12 Heat of formation + Delta-G solvation = -64.827664 kcal Electronic energy + Delta-G solvation = -26452.919494 eV Core-core repulsion = 22436.392011 eV Total energy + Delta-G solvation = -4016.527483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33666 -39.96516 -38.97526 -37.35105 -36.84091 -35.00418 -34.16206 -33.33334 -31.16806 -30.17771 -29.75822 -29.25085 -25.88082 -25.14539 -23.55909 -22.61770 -21.93523 -21.07416 -20.40111 -20.09224 -19.13745 -18.21922 -17.16990 -16.79132 -16.62267 -16.05639 -15.99357 -15.88841 -15.53261 -15.46706 -15.30555 -14.81217 -14.43552 -14.14168 -14.07222 -13.50904 -13.40029 -13.23850 -12.95223 -12.73556 -12.60081 -12.16945 -11.97930 -11.91301 -11.81723 -11.68124 -11.56569 -10.96940 -10.86405 -10.49655 -10.19442 -10.02877 -9.97610 -9.88311 -9.80912 -9.75202 -9.34964 -8.62831 -8.42795 -7.95498 -6.13918 -4.14872 0.78001 1.45717 1.53821 1.65665 1.96397 2.81459 3.14590 3.28676 3.35972 3.42006 3.70160 3.84991 4.06034 4.24734 4.39077 4.45029 4.48339 4.75852 4.89442 4.98480 5.08913 5.20348 5.24913 5.25350 5.31519 5.36818 5.41815 5.52944 5.65458 5.69797 5.89777 5.91102 6.05556 6.06170 6.17364 6.19639 6.38798 6.42575 6.56772 6.57617 6.78509 6.95738 7.08004 7.22950 7.33143 7.57237 7.61665 7.87956 8.38105 8.86643 9.46441 10.98520 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.002080 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.446860 B =13459.558420 C =15674.305715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C -0.108 4.108 4 C 0.121 3.879 5 N -0.700 5.700 6 C 0.513 3.487 7 O -0.517 6.517 8 C 0.504 3.496 9 O -0.490 6.490 10 N -0.641 5.641 11 C 0.171 3.829 12 C -0.187 4.187 13 C -0.059 4.059 14 C -0.219 4.219 15 C 0.164 3.836 16 O -0.316 6.316 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.162 4.162 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.415 0.585 36 H 0.423 0.577 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.266 0.734 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -31.632 -0.644 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.174 4.174 3 C -0.146 4.146 4 C -0.002 4.002 5 N -0.354 5.354 6 C 0.293 3.707 7 O -0.393 6.393 8 C 0.285 3.715 9 O -0.362 6.362 10 N -0.287 5.287 11 C 0.077 3.923 12 C -0.208 4.208 13 C -0.078 4.078 14 C -0.238 4.238 15 C 0.116 3.884 16 O -0.229 6.229 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.707 3.293 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.183 4.183 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.252 0.748 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.535 -31.439 -0.760 31.931 hybrid contribution -0.634 0.176 -0.251 0.704 sum -6.169 -31.263 -1.010 31.882 Atomic orbital electron populations 1.23945 0.95914 1.02253 0.99949 1.22723 0.95989 0.97805 1.00909 1.20977 0.98328 0.96906 0.98349 1.21467 0.94259 0.85024 0.99427 1.45771 1.39123 1.20576 1.29935 1.19932 0.81082 0.87225 0.82485 1.90784 1.65033 1.47033 1.36439 1.20200 0.81185 0.87911 0.82225 1.90858 1.63272 1.46865 1.35248 1.43055 1.39542 1.14277 1.31873 1.17247 0.91561 0.83297 1.00155 1.20671 0.92757 0.98579 1.08752 1.20707 0.99342 0.91155 0.96603 1.21461 0.94714 1.00436 1.07237 1.18862 0.90332 0.87251 0.91951 1.86141 1.41721 1.14224 1.80777 1.23123 0.96569 0.79823 1.00712 1.19593 0.95674 0.91981 0.97445 1.20840 1.00663 0.88797 1.46197 0.90705 1.24927 0.98201 0.95209 0.94642 1.69890 1.37358 0.98013 1.48282 0.86765 0.85135 0.78177 0.79251 1.20063 1.21168 1.18711 1.20226 1.01597 0.88672 1.07764 0.88159 0.88353 0.86905 0.90372 0.89867 0.90542 0.90548 0.74789 0.73951 0.85692 0.85305 0.84695 0.92361 0.92325 0.95340 0.95817 0.92450 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 14.32 29.02 0.42 -0.38 16 2 C -0.16 -0.68 9.52 -36.02 -0.34 -1.02 16 3 C -0.11 -0.46 5.77 -27.88 -0.16 -0.62 16 4 C 0.12 0.70 5.66 -4.04 -0.02 0.68 16 5 N -0.70 -5.22 5.55 -60.76 -0.34 -5.56 16 6 C 0.51 5.08 7.89 -11.63 -0.09 4.99 16 7 O -0.52 -5.95 16.48 5.49 0.09 -5.86 16 8 C 0.50 5.77 7.62 -11.63 -0.09 5.68 16 9 O -0.49 -6.88 14.16 5.48 0.08 -6.80 16 10 N -0.64 -6.85 5.32 -10.31 -0.05 -6.90 16 11 C 0.17 2.21 6.27 -83.78 -0.53 1.68 16 12 C -0.19 -2.11 9.96 -39.35 -0.39 -2.50 16 13 C -0.06 -0.71 10.03 -39.63 -0.40 -1.11 16 14 C -0.22 -3.25 9.04 -39.39 -0.36 -3.61 16 15 C 0.16 2.81 6.68 -39.25 -0.26 2.55 16 16 O -0.32 -6.29 10.13 -19.41 -0.20 -6.49 16 17 C 0.07 1.48 4.68 37.16 0.17 1.65 16 18 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 19 C -0.53 -14.84 9.66 -34.43 -0.33 -15.18 16 20 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 23 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.26 -6.30 6.54 56.52 0.37 -5.94 16 27 C -0.16 -2.56 8.59 -39.23 -0.34 -2.90 16 28 H 0.10 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 30 H 0.11 0.41 8.06 -52.49 -0.42 -0.02 16 31 H 0.08 0.32 7.79 -51.93 -0.40 -0.08 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.42 2.72 7.94 -40.82 -0.32 2.39 16 36 H 0.42 3.49 8.30 -40.82 -0.34 3.15 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.14 1.95 6.29 -52.49 -0.33 1.62 16 40 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 41 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 42 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.14 2.32 6.42 -52.49 -0.34 1.98 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -33.39 387.02 -7.68 -41.07 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.25 Total: 2.62 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.94 Total: -8.44 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.38 Total: -38.92 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.03 Total: -19.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.39 -7.68 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595115466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.761 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds