Wall clock time and date at job start Tue Mar 31 2020 16:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00132 * 2 1 4 4 C 1.53002 * 109.47314 * 125.00353 * 3 2 1 5 5 N 1.46496 * 109.47260 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99932 * 179.97438 * 5 4 3 7 7 O 1.21352 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.49352 * 119.99633 * 180.02562 * 6 5 4 9 9 O 1.21366 * 120.00406 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99707 * 180.02562 * 8 6 5 11 11 C 1.39717 * 120.00276 * 185.27462 * 10 8 6 12 12 C 1.38984 * 120.04902 * 213.34660 * 11 10 8 13 13 C 1.38110 * 120.03321 * 180.02562 * 12 11 10 14 14 C 1.38230 * 120.12982 * 359.68142 * 13 12 11 15 15 C 1.38774 * 120.09420 * 0.59761 * 14 13 12 16 16 O 1.35895 * 120.01966 * 179.70029 * 15 14 13 17 17 C 1.42910 * 116.99682 * 359.72501 * 16 15 14 18 18 C 1.52999 * 109.46581 * 180.02562 * 17 16 15 19 19 C 1.50711 * 109.46553 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99827 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00014 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46932 * 90.00550 * 23 21 19 25 25 H 1.48499 * 109.47081 * 209.99956 * 23 21 19 26 26 H 1.48502 * 109.47242 * 330.00207 * 23 21 19 27 27 C 1.38610 * 119.96227 * 359.42156 * 15 14 13 28 28 H 1.07998 * 120.00209 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99891 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00019 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47304 * 5.00158 * 3 2 1 32 32 H 1.09003 * 109.47470 * 245.00032 * 3 2 1 33 33 H 1.09001 * 109.47094 * 59.99676 * 4 3 2 34 34 H 1.09003 * 109.46590 * 300.00218 * 4 3 2 35 35 H 0.96997 * 120.00353 * 0.02562 * 5 4 3 36 36 H 0.97008 * 119.99768 * 5.27861 * 10 8 6 37 37 H 1.07996 * 119.98909 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93353 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.95230 * 180.29499 * 14 13 12 40 40 H 1.09003 * 109.46580 * 299.99856 * 17 16 15 41 41 H 1.08993 * 109.47222 * 59.99916 * 17 16 15 42 42 H 1.08994 * 109.47499 * 299.99237 * 18 17 16 43 43 H 1.08997 * 109.47328 * 60.00410 * 18 17 16 44 44 H 0.96999 * 119.99956 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.06040 * 180.25507 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7672 2.6020 1.1819 6 6 4.6835 2.8511 2.1384 7 8 4.9025 2.0240 2.9990 8 6 5.4294 4.1450 2.1390 9 8 5.2108 4.9720 1.2781 10 7 6.3461 4.3939 3.0952 11 6 6.9641 5.6452 3.1618 12 6 8.2830 5.7482 3.5877 13 6 8.8934 6.9853 3.6540 14 6 8.1971 8.1229 3.2909 15 6 6.8781 8.0269 2.8703 16 8 6.1931 9.1469 2.5195 17 6 6.8911 10.3904 2.6136 18 6 5.9649 11.5289 2.1815 19 6 6.7008 12.8404 2.2814 20 1 7.7262 12.8597 2.6196 21 6 6.0645 14.0155 1.9419 22 7 6.7065 15.1599 2.0295 23 14 4.2906 13.9820 1.3576 24 1 3.3824 14.1178 2.5246 25 1 4.0582 15.1066 0.4161 26 1 4.0209 12.6949 0.6676 27 6 6.2616 6.7873 2.8027 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1130 35 1 3.5919 3.2632 0.4943 36 1 6.5769 3.7041 3.7371 37 1 8.8310 4.8605 3.8671 38 1 9.9182 7.0636 3.9856 39 1 8.6787 9.0884 3.3393 40 1 7.2085 10.5517 3.6439 41 1 7.7656 10.3663 1.9636 42 1 5.6472 11.3678 1.1515 43 1 5.0907 11.5529 2.8320 44 1 6.2590 15.9866 1.7903 45 1 5.2365 6.7103 2.4717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595115466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:11 Heat of formation + Delta-G solvation = -87.757906 kcal Electronic energy + Delta-G solvation = -26453.913824 eV Core-core repulsion = 22436.392011 eV Total energy + Delta-G solvation = -4017.521813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.24828 -41.04645 -39.99369 -38.52008 -37.39405 -35.94893 -35.36301 -34.76699 -32.94975 -31.33186 -30.57935 -30.18533 -27.20436 -26.45937 -24.36708 -23.54777 -23.25398 -22.19744 -21.50950 -20.70514 -20.05250 -19.43477 -18.70989 -18.00508 -17.42063 -17.04906 -17.00040 -16.89709 -16.79705 -16.48124 -16.29487 -16.06629 -15.49879 -15.23570 -14.90369 -14.71358 -14.54978 -14.38629 -14.34311 -13.80780 -13.48736 -13.38728 -13.18714 -13.00496 -12.78626 -12.68361 -12.35826 -12.31259 -12.10763 -11.99435 -11.88886 -11.70509 -11.45395 -11.32910 -10.85668 -10.82433 -10.40869 -10.25912 -9.52514 -9.10072 -8.35807 -6.42226 -0.16288 0.42826 0.50891 1.05814 1.34526 1.36226 1.41538 1.48971 1.95163 2.19387 2.32116 2.55423 2.76494 2.99155 3.24196 3.86175 3.86498 4.06030 4.10241 4.11379 4.14803 4.19723 4.22432 4.35765 4.42617 4.49556 4.56150 4.57474 4.67007 4.87581 4.93409 5.04461 5.08251 5.12332 5.15360 5.17324 5.28719 5.34181 5.45321 5.51235 5.70964 5.74940 5.83466 5.86752 6.15347 6.17775 6.48105 6.57022 6.63235 6.75641 7.22977 8.79684 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.002080 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.446860 B =13459.558420 C =15674.305715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C -0.102 4.102 4 C 0.122 3.878 5 N -0.689 5.689 6 C 0.518 3.482 7 O -0.534 6.534 8 C 0.504 3.496 9 O -0.519 6.519 10 N -0.630 5.630 11 C 0.170 3.830 12 C -0.168 4.168 13 C -0.052 4.052 14 C -0.229 4.229 15 C 0.128 3.872 16 O -0.337 6.337 17 C 0.086 3.914 18 C -0.008 4.008 19 C -0.536 4.536 20 H 0.045 0.955 21 C 0.016 3.984 22 N -0.940 5.940 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.254 1.254 27 C -0.178 4.178 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.420 0.580 36 H 0.436 0.564 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.270 0.730 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -34.273 -0.505 34.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C -0.139 4.139 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.297 3.703 7 O -0.411 6.411 8 C 0.286 3.714 9 O -0.394 6.394 10 N -0.278 5.278 11 C 0.076 3.924 12 C -0.188 4.188 13 C -0.070 4.070 14 C -0.248 4.248 15 C 0.082 3.918 16 O -0.251 6.251 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.574 4.574 20 H 0.064 0.936 21 C -0.183 4.183 22 N -0.580 5.580 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.178 1.178 27 C -0.199 4.199 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.258 0.742 36 H 0.277 0.723 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.677 -34.126 -0.614 34.600 hybrid contribution -0.508 0.859 -0.261 1.032 sum -6.184 -33.267 -0.875 33.848 Atomic orbital electron populations 1.24083 0.96101 1.02698 0.99814 1.22822 0.96091 0.98072 1.00998 1.20935 0.98010 0.97071 0.97927 1.21580 0.94382 0.84141 0.99969 1.45829 1.38075 1.21174 1.29080 1.19635 0.81405 0.86361 0.82861 1.90780 1.65856 1.47240 1.37259 1.20534 0.80940 0.88152 0.81790 1.90852 1.64120 1.47924 1.36476 1.43005 1.39080 1.13795 1.31913 1.17369 0.92249 0.83196 0.99551 1.21137 0.91776 0.99859 1.06051 1.21136 1.00685 0.90217 0.94977 1.21590 0.93966 1.01670 1.07586 1.19117 0.91614 0.86556 0.94506 1.86044 1.42418 1.14562 1.82094 1.22724 0.95485 0.79730 1.00890 1.19455 0.95997 0.91739 0.97318 1.21105 0.99832 0.90819 1.45659 0.93634 1.25835 1.02898 0.94747 0.94799 1.70014 1.39462 0.98854 1.49650 0.85722 0.79513 0.78676 0.79194 1.18939 1.20327 1.17751 1.20213 1.01297 0.89395 1.09001 0.87445 0.88338 0.86148 0.90235 0.89113 0.90162 0.90958 0.74210 0.72328 0.81615 0.81696 0.84961 0.91851 0.92101 0.95679 0.95631 0.92082 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 14.32 67.79 0.97 -0.46 16 2 C -0.16 -1.18 9.52 25.65 0.24 -0.93 16 3 C -0.10 -0.72 5.77 29.85 0.17 -0.55 16 4 C 0.12 1.25 5.66 86.38 0.49 1.74 16 5 N -0.69 -9.49 5.55 -464.51 -2.58 -12.07 16 6 C 0.52 9.67 7.89 87.24 0.69 10.36 16 7 O -0.53 -11.51 16.48 -3.25 -0.05 -11.56 16 8 C 0.50 11.10 7.62 87.24 0.66 11.77 16 9 O -0.52 -14.55 14.16 -3.30 -0.05 -14.60 16 10 N -0.63 -12.35 5.32 -304.90 -1.62 -13.97 16 11 C 0.17 4.11 6.27 38.20 0.24 4.35 16 12 C -0.17 -3.19 9.96 22.42 0.22 -2.96 16 13 C -0.05 -1.08 10.03 22.24 0.22 -0.85 16 14 C -0.23 -6.57 9.04 22.40 0.20 -6.37 16 15 C 0.13 4.44 6.68 22.49 0.15 4.59 16 16 O -0.34 -13.75 10.13 -92.36 -0.94 -14.69 16 17 C 0.09 3.61 4.68 71.98 0.34 3.95 16 18 C -0.01 -0.37 4.41 29.85 0.13 -0.24 16 19 C -0.54 -30.93 9.66 25.60 0.25 -30.68 16 20 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 21 C 0.02 0.91 5.47 84.66 0.46 1.37 16 22 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.25 -11.54 6.54 99.48 0.65 -10.88 16 27 C -0.18 -5.65 8.59 22.50 0.19 -5.45 16 28 H 0.11 0.63 8.06 -2.91 -0.02 0.60 16 29 H 0.10 0.71 7.84 -2.91 -0.02 0.69 16 30 H 0.12 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.08 0.56 7.79 -2.39 -0.02 0.54 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 5.11 7.94 -92.71 -0.74 4.37 16 36 H 0.44 6.11 8.30 -92.70 -0.77 5.34 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.13 3.79 6.29 -2.91 -0.02 3.77 16 40 H 0.06 2.54 7.67 -2.39 -0.02 2.52 16 41 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 42 H 0.02 1.24 7.20 -2.39 -0.02 1.22 16 43 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.12 4.21 6.42 -2.91 -0.02 4.19 16 Total: -1.00 -73.49 387.02 2.05 -71.44 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.54 Total: 17.08 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.64 Total: -10.38 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -3.90 Total: -83.91 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.04 Total: -40.85 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -73.49 2.05 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595115466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.315 kcal (2) G-P(sol) polarization free energy of solvation -73.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds