Wall clock time and date at job start Tue Mar 31 2020 17:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47257 * 2 1 4 4 N 1.46498 * 109.46716 * 120.00137 * 2 1 3 5 5 C 1.46504 * 120.00032 * 293.03781 * 4 2 1 6 6 C 1.50700 * 109.47159 * 270.00460 * 5 4 2 7 7 H 1.07999 * 119.99738 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00127 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46868 * 60.00638 * 10 8 6 12 12 H 1.48501 * 109.47032 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47652 * 300.00448 * 10 8 6 14 14 C 1.34778 * 120.00141 * 113.04357 * 4 2 1 15 15 O 1.21357 * 120.00279 * 171.14361 * 14 4 2 16 16 C 1.49333 * 119.99762 * 351.14126 * 14 4 2 17 17 O 1.21387 * 120.00184 * 0.91962 * 16 14 4 18 18 N 1.34774 * 119.99972 * 180.91611 * 16 14 4 19 19 C 1.39880 * 120.00189 * 187.77860 * 18 16 14 20 20 C 1.38604 * 119.94818 * 27.51765 * 19 18 16 21 21 C 1.38166 * 120.25831 * 179.97438 * 20 19 18 22 22 C 1.38401 * 119.84326 * 0.21152 * 21 20 19 23 23 C 1.37849 * 120.12253 * 359.97438 * 22 21 20 24 24 C 1.38714 * 120.82552 * 359.59625 * 23 22 21 25 25 O 1.36188 * 111.25759 * 181.06692 * 24 23 22 26 26 C 1.43783 * 109.17933 * 340.65427 * 25 24 23 27 27 C 1.51661 * 132.11758 * 179.11353 * 23 22 21 28 28 H 1.09000 * 109.46987 * 304.31712 * 1 2 3 29 29 H 1.09005 * 109.46950 * 64.31495 * 1 2 3 30 30 H 1.08998 * 109.47706 * 184.31813 * 1 2 3 31 31 H 1.08996 * 109.46596 * 239.99653 * 2 1 3 32 32 H 1.08999 * 109.47367 * 185.71355 * 3 2 1 33 33 H 1.09004 * 109.47117 * 305.70660 * 3 2 1 34 34 H 1.09000 * 109.47354 * 65.70830 * 3 2 1 35 35 H 1.09000 * 109.46944 * 30.00617 * 5 4 2 36 36 H 1.08998 * 109.46946 * 150.00446 * 5 4 2 37 37 H 0.96995 * 119.99964 * 179.97438 * 9 8 6 38 38 H 0.97008 * 119.99777 * 7.78231 * 18 16 14 39 39 H 1.07998 * 119.87150 * 359.97044 * 20 19 18 40 40 H 1.07998 * 120.07974 * 180.22672 * 21 20 19 41 41 H 1.07998 * 119.93756 * 180.02562 * 22 21 20 42 42 H 1.08995 * 110.75758 * 269.54547 * 26 25 24 43 43 H 1.09000 * 110.91180 * 146.25115 * 26 25 24 44 44 H 1.08994 * 110.92976 * 313.72556 * 27 23 22 45 45 H 1.08998 * 110.93225 * 77.36253 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7943 -0.1076 2.5214 6 6 2.9502 0.7918 2.8764 7 1 3.7694 0.9169 2.1839 8 6 2.9612 1.4557 4.0847 9 7 1.9632 1.3037 4.9277 10 14 4.3943 2.5700 4.5251 11 1 4.5045 3.6560 3.5182 12 1 4.1671 3.1611 5.8684 13 1 5.6507 1.7786 4.5391 14 6 2.6736 -1.8624 1.0775 15 8 3.2171 -2.3543 2.0446 16 6 2.7309 -2.5553 -0.2441 17 8 2.2014 -2.0551 -1.2151 18 7 3.3704 -3.7361 -0.3587 19 6 3.5659 -4.3060 -1.6211 20 6 3.6494 -3.4941 -2.7414 21 6 3.8430 -4.0502 -3.9913 22 6 3.9495 -5.4236 -4.1251 23 6 3.8633 -6.2356 -3.0145 24 6 3.6780 -5.6944 -1.7509 25 8 3.6443 -6.6663 -0.7975 26 6 3.3582 -7.9299 -1.4210 27 6 3.9234 -7.7420 -2.8488 28 1 -0.3633 0.5794 0.8488 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3634 -1.0247 0.0774 31 1 1.8933 -0.5139 -0.8899 32 1 3.1252 1.4441 -0.1023 33 1 1.5957 1.9849 -0.8345 34 1 1.7626 1.9259 0.9367 35 1 0.8718 0.4729 2.5117 36 1 1.7140 -0.9049 3.2603 37 1 1.9712 1.7705 5.7779 38 1 3.6951 -4.1908 0.4343 39 1 3.5627 -2.4227 -2.6369 40 1 3.9112 -3.4146 -4.8618 41 1 4.1012 -5.8598 -5.1013 42 1 2.2839 -8.1111 -1.4516 43 1 3.8710 -8.7426 -0.9066 44 1 3.2935 -8.2402 -3.5857 45 1 4.9510 -8.1000 -2.9117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599975012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:20 Heat of formation + Delta-G solvation = -47.278119 kcal Electronic energy + Delta-G solvation = -28879.020748 eV Core-core repulsion = 24863.254271 eV Total energy + Delta-G solvation = -4015.766478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52948 -40.51324 -38.46524 -37.27888 -36.36273 -34.83449 -32.79686 -32.24066 -30.87662 -29.78242 -29.18887 -27.79150 -26.50264 -24.88452 -23.69451 -22.82069 -22.51536 -21.56674 -20.49402 -19.57939 -17.82748 -17.52990 -16.87352 -16.57865 -16.50502 -16.22052 -15.72567 -15.34887 -15.06439 -14.85564 -14.52575 -13.95707 -13.70682 -13.51662 -13.32896 -13.27270 -13.22139 -12.78034 -12.37407 -12.24516 -12.16284 -11.99087 -11.88401 -11.64651 -11.52430 -11.31359 -11.19872 -11.02674 -10.92827 -10.71638 -10.55364 -10.52453 -10.14292 -9.80059 -9.58528 -8.64184 -8.48780 -8.43565 -7.99346 -7.77197 -6.05229 -4.08670 0.96096 1.12138 1.90544 2.66258 2.97764 3.32713 3.36881 3.40161 3.48771 3.76371 3.98102 4.12425 4.30067 4.44211 4.65910 4.69110 4.74422 4.98455 5.06898 5.14374 5.27950 5.29309 5.38600 5.44353 5.51497 5.62733 5.76632 5.89361 5.98453 6.05238 6.16983 6.27077 6.30617 6.35445 6.44299 6.47952 6.54698 6.78676 6.91093 7.00441 7.09078 7.19142 7.36523 7.41283 7.86971 7.96497 8.19268 8.26264 8.65903 8.94841 9.54831 11.03117 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002992 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.903892 B = 9354.679735 C = 9941.956055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.154 4.154 4 N -0.550 5.550 5 C 0.244 3.756 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.494 3.506 15 O -0.519 6.519 16 C 0.511 3.489 17 O -0.498 6.498 18 N -0.644 5.644 19 C 0.141 3.859 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.157 4.157 24 C 0.076 3.924 25 O -0.303 6.303 26 C 0.053 3.947 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.143 0.857 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.426 0.574 39 H 0.151 0.849 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -15.175 -18.815 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 C -0.212 4.212 4 N -0.282 5.282 5 C 0.126 3.874 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.274 3.726 15 O -0.396 6.396 16 C 0.296 3.704 17 O -0.374 6.374 18 N -0.290 5.290 19 C 0.046 3.954 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.158 4.158 24 C 0.029 3.971 25 O -0.217 6.217 26 C -0.022 4.022 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.264 0.736 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.250 -14.928 -18.457 23.771 hybrid contribution 0.846 0.345 0.686 1.143 sum 2.096 -14.583 -17.771 23.084 Atomic orbital electron populations 1.22037 0.95879 1.01430 1.01593 1.22423 0.94512 0.94941 0.90447 1.22105 1.00801 0.95655 1.02624 1.48325 1.51103 1.18379 1.10355 1.19418 0.97250 0.94099 0.76664 1.21333 1.05693 1.26307 1.02505 0.92236 1.24914 0.96207 0.96968 0.95970 1.69916 1.31120 1.43069 1.09323 0.86568 0.82803 0.80642 0.77490 1.20199 1.21240 1.20186 1.19443 0.82338 0.83556 0.87303 1.90761 1.43758 1.66210 1.38835 1.21159 0.77292 0.81102 0.90870 1.90356 1.43781 1.62652 1.40591 1.43274 1.55711 1.21647 1.08360 1.17106 1.04526 0.87454 0.86288 1.21123 0.98954 1.00985 0.90563 1.20946 1.01744 0.94377 0.97134 1.20297 1.00390 0.92970 0.97265 1.20569 1.06534 0.95433 0.93288 1.19196 1.01088 0.88502 0.88359 1.86857 1.86854 1.16061 1.31920 1.23814 1.01241 0.85030 0.92152 1.21787 1.02993 0.92192 0.97526 0.92374 0.92324 0.93248 0.84120 0.93065 0.93182 0.90264 0.94090 0.94007 0.92651 0.73569 0.83122 0.84909 0.85709 0.90519 0.87506 0.89008 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.22 37.16 0.34 -2.16 16 2 C 0.08 1.46 2.85 -67.93 -0.19 1.27 16 3 C -0.15 -2.80 8.52 37.15 0.32 -2.49 16 4 N -0.55 -12.01 2.38 -168.02 -0.40 -12.41 16 5 C 0.24 6.29 4.35 -5.19 -0.02 6.26 16 6 C -0.52 -14.39 7.71 -34.44 -0.27 -14.65 16 7 H 0.06 1.66 7.71 -52.49 -0.40 1.25 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.49 10.53 7.69 -11.64 -0.09 10.44 16 15 O -0.52 -12.53 16.18 5.49 0.09 -12.44 16 16 C 0.51 9.01 7.54 -11.64 -0.09 8.92 16 17 O -0.50 -8.58 10.41 5.46 0.06 -8.52 16 18 N -0.64 -10.04 5.34 -10.11 -0.05 -10.09 16 19 C 0.14 1.99 6.40 -83.43 -0.53 1.46 16 20 C -0.10 -1.24 8.66 -39.47 -0.34 -1.59 16 21 C -0.12 -1.26 10.06 -39.55 -0.40 -1.66 16 22 C -0.09 -0.84 10.03 -39.66 -0.40 -1.24 16 23 C -0.16 -1.61 6.27 -104.12 -0.65 -2.27 16 24 C 0.08 0.97 6.93 -38.79 -0.27 0.70 16 25 O -0.30 -3.70 11.11 -20.34 -0.23 -3.93 16 26 C 0.05 0.41 8.01 38.05 0.30 0.71 16 27 C -0.11 -0.76 7.12 -26.51 -0.19 -0.95 16 28 H 0.06 1.02 7.11 -51.93 -0.37 0.65 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.14 2.51 4.01 -56.46 -0.23 2.28 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.65 6.49 -51.93 -0.34 1.31 16 35 H 0.04 1.07 6.81 -51.93 -0.35 0.72 16 36 H 0.04 1.20 7.56 -51.93 -0.39 0.81 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.43 6.51 8.29 -40.82 -0.34 6.17 16 39 H 0.15 2.06 6.03 -52.49 -0.32 1.74 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -32.17 369.94 -7.92 -40.09 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.10 Total: 6.08 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.57 Total: 4.40 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.28 Total: -47.98 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.08 Total: -24.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -7.92 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599975012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.191 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds