Wall clock time and date at job start Tue Mar 31 2020 17:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47257 * 2 1 4 4 N 1.46498 * 109.46716 * 120.00137 * 2 1 3 5 5 C 1.46504 * 120.00032 * 293.03781 * 4 2 1 6 6 C 1.50700 * 109.47159 * 270.00460 * 5 4 2 7 7 H 1.07999 * 119.99738 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99873 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00127 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46868 * 60.00638 * 10 8 6 12 12 H 1.48501 * 109.47032 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47652 * 300.00448 * 10 8 6 14 14 C 1.34778 * 120.00141 * 113.04357 * 4 2 1 15 15 O 1.21357 * 120.00279 * 171.14361 * 14 4 2 16 16 C 1.49333 * 119.99762 * 351.14126 * 14 4 2 17 17 O 1.21387 * 120.00184 * 0.91962 * 16 14 4 18 18 N 1.34774 * 119.99972 * 180.91611 * 16 14 4 19 19 C 1.39880 * 120.00189 * 187.77860 * 18 16 14 20 20 C 1.38604 * 119.94818 * 27.51765 * 19 18 16 21 21 C 1.38166 * 120.25831 * 179.97438 * 20 19 18 22 22 C 1.38401 * 119.84326 * 0.21152 * 21 20 19 23 23 C 1.37849 * 120.12253 * 359.97438 * 22 21 20 24 24 C 1.38714 * 120.82552 * 359.59625 * 23 22 21 25 25 O 1.36188 * 111.25759 * 181.06692 * 24 23 22 26 26 C 1.43783 * 109.17933 * 340.65427 * 25 24 23 27 27 C 1.51661 * 132.11758 * 179.11353 * 23 22 21 28 28 H 1.09000 * 109.46987 * 304.31712 * 1 2 3 29 29 H 1.09005 * 109.46950 * 64.31495 * 1 2 3 30 30 H 1.08998 * 109.47706 * 184.31813 * 1 2 3 31 31 H 1.08996 * 109.46596 * 239.99653 * 2 1 3 32 32 H 1.08999 * 109.47367 * 185.71355 * 3 2 1 33 33 H 1.09004 * 109.47117 * 305.70660 * 3 2 1 34 34 H 1.09000 * 109.47354 * 65.70830 * 3 2 1 35 35 H 1.09000 * 109.46944 * 30.00617 * 5 4 2 36 36 H 1.08998 * 109.46946 * 150.00446 * 5 4 2 37 37 H 0.96995 * 119.99964 * 179.97438 * 9 8 6 38 38 H 0.97008 * 119.99777 * 7.78231 * 18 16 14 39 39 H 1.07998 * 119.87150 * 359.97044 * 20 19 18 40 40 H 1.07998 * 120.07974 * 180.22672 * 21 20 19 41 41 H 1.07998 * 119.93756 * 180.02562 * 22 21 20 42 42 H 1.08995 * 110.75758 * 269.54547 * 26 25 24 43 43 H 1.09000 * 110.91180 * 146.25115 * 26 25 24 44 44 H 1.08994 * 110.92976 * 313.72556 * 27 23 22 45 45 H 1.08998 * 110.93225 * 77.36253 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7943 -0.1076 2.5214 6 6 2.9502 0.7918 2.8764 7 1 3.7694 0.9169 2.1839 8 6 2.9612 1.4557 4.0847 9 7 1.9632 1.3037 4.9277 10 14 4.3943 2.5700 4.5251 11 1 4.5045 3.6560 3.5182 12 1 4.1671 3.1611 5.8684 13 1 5.6507 1.7786 4.5391 14 6 2.6736 -1.8624 1.0775 15 8 3.2171 -2.3543 2.0446 16 6 2.7309 -2.5553 -0.2441 17 8 2.2014 -2.0551 -1.2151 18 7 3.3704 -3.7361 -0.3587 19 6 3.5659 -4.3060 -1.6211 20 6 3.6494 -3.4941 -2.7414 21 6 3.8430 -4.0502 -3.9913 22 6 3.9495 -5.4236 -4.1251 23 6 3.8633 -6.2356 -3.0145 24 6 3.6780 -5.6944 -1.7509 25 8 3.6443 -6.6663 -0.7975 26 6 3.3582 -7.9299 -1.4210 27 6 3.9234 -7.7420 -2.8488 28 1 -0.3633 0.5794 0.8488 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3634 -1.0247 0.0774 31 1 1.8933 -0.5139 -0.8899 32 1 3.1252 1.4441 -0.1023 33 1 1.5957 1.9849 -0.8345 34 1 1.7626 1.9259 0.9367 35 1 0.8718 0.4729 2.5117 36 1 1.7140 -0.9049 3.2603 37 1 1.9712 1.7705 5.7779 38 1 3.6951 -4.1908 0.4343 39 1 3.5627 -2.4227 -2.6369 40 1 3.9112 -3.4146 -4.8618 41 1 4.1012 -5.8598 -5.1013 42 1 2.2839 -8.1111 -1.4516 43 1 3.8710 -8.7426 -0.9066 44 1 3.2935 -8.2402 -3.5857 45 1 4.9510 -8.1000 -2.9117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599975012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:19 Heat of formation + Delta-G solvation = -68.258077 kcal Electronic energy + Delta-G solvation = -28879.930508 eV Core-core repulsion = 24863.254271 eV Total energy + Delta-G solvation = -4016.676237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55625 -41.76181 -39.93213 -38.38627 -37.89645 -36.05087 -34.89375 -33.02083 -32.57408 -30.68214 -30.14468 -29.62890 -27.94602 -26.47003 -24.88153 -24.11696 -23.40672 -22.85828 -21.81473 -20.98737 -19.08223 -18.64133 -18.45245 -18.10228 -17.70914 -17.36920 -16.88128 -16.77123 -16.64274 -16.10504 -15.85975 -15.34326 -15.32891 -14.78591 -14.59763 -14.27597 -14.13552 -13.95485 -13.90777 -13.60165 -13.50612 -13.37971 -13.09210 -12.85182 -12.77176 -12.74505 -12.62758 -12.49764 -12.29292 -12.21366 -12.09285 -11.97857 -11.60543 -11.59309 -11.34755 -10.62425 -10.05591 -9.63345 -9.44554 -8.93322 -8.21862 -6.33517 -0.13528 0.28396 0.59634 1.24613 1.37473 1.40805 1.48309 2.06872 2.22153 2.36994 2.53130 2.72679 3.08129 3.18945 3.48160 3.65900 4.01659 4.03954 4.16349 4.19892 4.30989 4.35866 4.37961 4.48124 4.62074 4.69011 4.80839 4.86296 4.89696 4.91428 4.94274 5.00883 5.03645 5.09819 5.13034 5.23824 5.35503 5.42433 5.48788 5.50704 5.61644 5.65296 5.71691 5.89759 6.03939 6.14193 6.44405 6.63443 6.71676 6.97240 7.34652 8.85973 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002992 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.903892 B = 9354.679735 C = 9941.956055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.147 4.147 4 N -0.556 5.556 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.486 3.514 15 O -0.557 6.557 16 C 0.521 3.479 17 O -0.494 6.494 18 N -0.634 5.634 19 C 0.104 3.896 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.330 6.330 26 C 0.041 3.959 27 C -0.100 4.100 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.155 0.845 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.267 0.733 38 H 0.424 0.576 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 -16.223 -22.184 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 C -0.205 4.205 4 N -0.287 5.287 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.267 3.733 15 O -0.437 6.437 16 C 0.305 3.695 17 O -0.371 6.371 18 N -0.279 5.279 19 C 0.011 3.989 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.098 4.098 23 C -0.160 4.160 24 C 0.013 3.987 25 O -0.245 6.245 26 C -0.033 4.033 27 C -0.137 4.137 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.171 0.829 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.076 0.924 38 H 0.262 0.738 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.101 0.899 43 H 0.147 0.853 44 H 0.137 0.863 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.993 -15.998 -21.886 27.183 hybrid contribution 0.616 0.520 1.637 1.824 sum 2.609 -15.477 -20.250 25.620 Atomic orbital electron populations 1.21992 0.94287 1.01318 1.02672 1.22750 0.95849 0.94911 0.89207 1.22039 1.00428 0.95537 1.02484 1.48356 1.51364 1.18922 1.10031 1.18891 0.96518 0.92368 0.78052 1.21519 1.05898 1.26616 1.02695 0.92850 1.25762 0.98819 0.98417 0.95833 1.70030 1.32903 1.44040 1.09740 0.85547 0.79098 0.78916 0.77755 1.18675 1.20395 1.20381 1.20120 0.81238 0.83286 0.88629 1.90721 1.45244 1.67078 1.40674 1.20169 0.78404 0.81930 0.89004 1.90324 1.44190 1.62972 1.39619 1.43117 1.54734 1.20608 1.09428 1.17408 1.07471 0.88560 0.85497 1.21164 1.00050 1.00412 0.91514 1.21298 1.00436 0.95422 0.96731 1.20749 0.97999 0.92468 0.98575 1.21081 1.05116 0.97404 0.92380 1.19425 1.01410 0.88147 0.89719 1.86829 1.86988 1.17496 1.33167 1.24172 1.02213 0.83830 0.93043 1.21884 1.04465 0.89944 0.97363 0.93902 0.88934 0.93561 0.82856 0.94011 0.89455 0.93312 0.94896 0.97995 0.92420 0.73836 0.84428 0.82176 0.82002 0.89912 0.85257 0.86341 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.22 71.98 0.66 -4.07 16 2 C 0.07 2.73 2.85 44.99 0.13 2.86 16 3 C -0.15 -5.32 8.52 71.98 0.61 -4.71 16 4 N -0.56 -25.36 2.38 -803.86 -1.92 -27.28 16 5 C 0.26 14.26 4.35 85.63 0.37 14.63 16 6 C -0.53 -30.39 7.71 25.60 0.20 -30.19 16 7 H 0.05 3.07 7.71 -2.91 -0.02 3.05 16 8 C 0.01 0.62 5.46 84.65 0.46 1.08 16 9 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.49 21.80 7.69 87.23 0.67 22.47 16 15 O -0.56 -28.67 16.18 -3.27 -0.05 -28.72 16 16 C 0.52 19.00 7.54 87.23 0.66 19.66 16 17 O -0.49 -17.09 10.41 -3.36 -0.03 -17.13 16 18 N -0.63 -20.55 5.34 -304.24 -1.62 -22.18 16 19 C 0.10 2.95 6.40 38.34 0.25 3.19 16 20 C -0.11 -2.79 8.66 22.34 0.19 -2.60 16 21 C -0.12 -2.13 10.06 22.29 0.22 -1.90 16 22 C -0.08 -1.18 10.03 22.22 0.22 -0.96 16 23 C -0.16 -2.81 6.27 -19.54 -0.12 -2.94 16 24 C 0.06 1.48 6.93 22.78 0.16 1.64 16 25 O -0.33 -7.91 11.11 -95.70 -1.06 -8.98 16 26 C 0.04 0.55 8.01 72.56 0.58 1.14 16 27 C -0.10 -1.04 7.12 30.73 0.22 -0.82 16 28 H 0.04 1.52 7.11 -2.39 -0.02 1.50 16 29 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.16 5.39 4.01 -74.03 -0.30 5.10 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.05 2.06 6.49 -2.39 -0.02 2.05 16 35 H 0.03 1.83 6.81 -2.39 -0.02 1.81 16 36 H 0.00 0.12 7.56 -2.39 -0.02 0.10 16 37 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.42 13.80 8.29 -92.70 -0.77 13.03 16 39 H 0.14 3.74 6.03 -2.91 -0.02 3.72 16 40 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.13 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -73.46 369.94 3.08 -70.38 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.02 Total: 23.77 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.49 Total: 18.46 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -3.26 Total: -105.08 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -1.15 Total: -54.82 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.46 3.08 -70.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599975012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.119 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds