Wall clock time and date at job start Tue Mar 31 2020 16:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 C 1.50708 * 109.47087 * 240.00248 * 2 1 3 5 5 H 1.07998 * 119.99718 * 240.00166 * 4 2 1 6 6 C 1.37868 * 119.99972 * 60.00207 * 4 2 1 7 7 N 1.31510 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46789 * 59.99582 * 8 6 4 10 10 H 1.48493 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46895 * 300.00118 * 8 6 4 12 12 C 1.53001 * 109.47344 * 120.00155 * 2 1 3 13 13 N 1.46499 * 109.46894 * 300.00009 * 12 2 1 14 14 C 1.34778 * 119.99742 * 179.97438 * 13 12 2 15 15 O 1.21357 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.49334 * 119.99714 * 179.97438 * 14 13 12 17 17 O 1.21389 * 120.00180 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99714 * 180.02562 * 16 14 13 19 19 C 1.39884 * 119.99640 * 185.53111 * 18 16 14 20 20 C 1.38602 * 119.95231 * 24.87009 * 19 18 16 21 21 C 1.38169 * 120.26078 * 179.97438 * 20 19 18 22 22 C 1.38401 * 119.83594 * 0.21545 * 21 20 19 23 23 C 1.37842 * 120.13002 * 359.97438 * 22 21 20 24 24 C 1.38720 * 120.82543 * 359.60142 * 23 22 21 25 25 O 1.36183 * 111.25942 * 181.05982 * 24 23 22 26 26 C 1.43782 * 109.17953 * 340.65740 * 25 24 23 27 27 C 1.51660 * 132.11846 * 179.10646 * 23 22 21 28 28 H 1.09001 * 109.46605 * 299.99974 * 1 2 3 29 29 H 1.09002 * 109.46624 * 59.99828 * 1 2 3 30 30 H 1.08996 * 109.46708 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47035 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46989 * 300.00043 * 3 2 1 33 33 H 1.09000 * 109.46849 * 60.00140 * 3 2 1 34 34 H 0.97003 * 120.00385 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47566 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.46887 * 59.99650 * 12 2 1 37 37 H 0.97003 * 120.00137 * 359.97438 * 13 12 2 38 38 H 0.96997 * 120.00533 * 5.53047 * 18 16 14 39 39 H 1.08001 * 119.87098 * 359.97438 * 20 19 18 40 40 H 1.07993 * 120.08104 * 180.24546 * 21 20 19 41 41 H 1.08007 * 119.93236 * 180.02562 * 22 21 20 42 42 H 1.09002 * 110.75405 * 269.54256 * 26 25 24 43 43 H 1.08998 * 110.91795 * 146.25351 * 26 25 24 44 44 H 1.08996 * 110.93462 * 313.73174 * 27 23 22 45 45 H 1.08999 * 110.93426 * 77.36814 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8261 -0.4205 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5747 -1.4782 3.7808 16 6 1.3796 0.2128 4.8888 17 8 0.6821 1.2000 4.7774 18 7 1.7053 -0.2477 6.1129 19 6 1.1470 0.3405 7.2527 20 6 -0.0692 0.9996 7.1661 21 6 -0.6267 1.5824 8.2880 22 6 0.0347 1.5112 9.5017 23 6 1.2464 0.8602 9.5923 24 6 1.8168 0.2619 8.4783 25 8 2.9963 -0.3424 8.7920 26 6 3.4917 0.2013 10.0274 27 6 2.1964 0.6363 10.7530 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7082 1.1610 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3267 -0.9869 6.2035 39 1 -0.5832 1.0579 6.2181 40 1 -1.5763 2.0918 8.2181 41 1 -0.3999 1.9658 10.3798 42 1 4.1366 1.0599 9.8405 43 1 4.0201 -0.5587 10.6029 44 1 2.3538 1.5592 11.3111 45 1 1.8316 -0.1551 11.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599983215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:04 Heat of formation + Delta-G solvation = -69.357458 kcal Electronic energy + Delta-G solvation = -27967.156219 eV Core-core repulsion = 23950.432310 eV Total energy + Delta-G solvation = -4016.723910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62136 -40.55054 -38.77318 -37.40399 -36.53809 -35.24527 -33.35562 -32.33401 -30.92411 -29.87716 -29.27562 -26.42552 -25.74048 -25.33453 -24.25766 -23.47519 -22.63253 -21.64072 -20.05036 -19.12074 -18.63519 -17.65960 -17.29476 -16.81011 -16.49334 -15.96340 -15.73119 -15.63534 -15.16523 -14.92320 -14.62982 -14.30883 -13.86843 -13.63403 -13.41447 -13.35176 -12.96568 -12.94612 -12.67404 -12.28139 -12.24308 -12.05589 -11.82278 -11.41991 -11.29533 -11.27898 -11.14626 -10.87567 -10.75192 -10.69139 -10.41551 -10.21130 -9.67183 -9.57860 -9.27278 -8.82945 -8.69230 -8.65103 -8.38474 -8.08267 -6.03655 -4.14624 0.84275 1.03977 1.66555 2.40349 2.88240 3.27220 3.29277 3.33978 3.36998 3.55000 3.77703 4.04877 4.22329 4.37778 4.58857 4.65182 4.67486 4.92277 4.99242 5.06457 5.21198 5.22950 5.32355 5.37335 5.50528 5.80649 5.95564 6.07948 6.16504 6.20806 6.25504 6.37400 6.44416 6.57730 6.77930 6.82928 6.86875 6.90946 6.98418 7.00283 7.31112 7.53327 7.56502 7.67551 7.85347 7.98533 8.09653 8.26086 8.37537 8.85278 9.51338 10.97720 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.002212 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.020088 B =12652.921631 C =13261.336751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.677 5.677 14 C 0.498 3.502 15 O -0.530 6.530 16 C 0.508 3.492 17 O -0.501 6.501 18 N -0.642 5.642 19 C 0.138 3.862 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.156 4.156 24 C 0.075 3.925 25 O -0.304 6.304 26 C 0.053 3.947 27 C -0.108 4.108 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.426 0.574 39 H 0.157 0.843 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 1.892 25.863 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.329 5.329 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.291 3.709 17 O -0.375 6.375 18 N -0.288 5.288 19 C 0.043 3.957 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.158 4.158 24 C 0.028 3.972 25 O -0.218 6.218 26 C -0.022 4.022 27 C -0.145 4.145 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.264 0.736 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.387 1.811 25.472 25.540 hybrid contribution 0.420 -0.365 -0.632 0.842 sum 0.033 1.445 24.841 24.883 Atomic orbital electron populations 1.21862 0.97565 0.99326 1.00414 1.18385 0.92996 0.92863 0.90207 1.21864 0.98659 0.98241 1.00414 1.20901 1.31795 1.12211 0.89753 0.92384 1.24879 0.94812 0.94908 0.98874 1.69792 1.36380 1.22651 1.23436 0.86610 0.79214 0.79765 0.82126 1.20268 1.21319 1.20269 1.21985 0.98655 0.96097 0.82689 1.46217 1.50334 1.31317 1.05001 1.19696 0.82638 0.85280 0.84666 1.90753 1.37646 1.25806 1.86584 1.20670 0.81140 0.84321 0.84758 1.90718 1.36025 1.24226 1.86540 1.43135 1.46019 1.36110 1.03557 1.17104 0.94112 1.01638 0.82842 1.21294 0.92448 0.97252 1.00991 1.20985 1.00513 1.00989 0.91662 1.20327 0.93418 0.98882 0.98172 1.20570 0.97603 1.03604 0.93997 1.19162 0.87766 0.97081 0.93168 1.86841 1.34482 1.58714 1.41754 1.23822 0.96004 0.99596 0.82802 1.21792 0.93061 1.03137 0.96530 0.97270 0.89400 0.95302 0.95315 0.89398 0.97274 0.92860 0.91860 0.91850 0.75101 0.73598 0.82573 0.84814 0.85624 0.90475 0.87463 0.88941 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.29 0.50 -155.65 -0.08 1.21 16 3 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.46 9.35 55.43 0.52 -22.94 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.64 4.50 -4.04 -0.02 2.62 16 13 N -0.68 -12.39 4.95 -60.77 -0.30 -12.69 16 14 C 0.50 8.74 7.88 -11.64 -0.09 8.65 16 15 O -0.53 -10.22 16.48 5.49 0.09 -10.13 16 16 C 0.51 7.95 7.69 -11.64 -0.09 7.86 16 17 O -0.50 -8.32 13.63 5.46 0.07 -8.24 16 18 N -0.64 -8.84 5.36 -10.11 -0.05 -8.90 16 19 C 0.14 1.80 6.45 -83.43 -0.54 1.26 16 20 C -0.10 -1.23 8.69 -39.47 -0.34 -1.57 16 21 C -0.12 -1.19 10.06 -39.55 -0.40 -1.59 16 22 C -0.09 -0.78 10.03 -39.67 -0.40 -1.18 16 23 C -0.16 -1.49 6.27 -104.12 -0.65 -2.14 16 24 C 0.08 0.88 6.93 -38.78 -0.27 0.62 16 25 O -0.30 -3.36 11.11 -20.33 -0.23 -3.59 16 26 C 0.05 0.36 8.01 38.05 0.30 0.67 16 27 C -0.11 -0.68 7.12 -26.51 -0.19 -0.86 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 29 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.41 7.33 5.63 -40.82 -0.23 7.10 16 38 H 0.43 5.53 8.26 -40.82 -0.34 5.20 16 39 H 0.16 2.08 5.76 -52.49 -0.30 1.78 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -29.07 368.01 -7.88 -36.95 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.98 Total: 10.13 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.53 Total: -1.65 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.16 Total: -44.53 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.07 -7.88 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599983215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.408 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds