Wall clock time and date at job start Tue Mar 31 2020 16:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 C 1.50708 * 109.47087 * 240.00248 * 2 1 3 5 5 H 1.07998 * 119.99718 * 240.00166 * 4 2 1 6 6 C 1.37868 * 119.99972 * 60.00207 * 4 2 1 7 7 N 1.31510 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46789 * 59.99582 * 8 6 4 10 10 H 1.48493 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46895 * 300.00118 * 8 6 4 12 12 C 1.53001 * 109.47344 * 120.00155 * 2 1 3 13 13 N 1.46499 * 109.46894 * 300.00009 * 12 2 1 14 14 C 1.34778 * 119.99742 * 179.97438 * 13 12 2 15 15 O 1.21357 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.49334 * 119.99714 * 179.97438 * 14 13 12 17 17 O 1.21389 * 120.00180 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99714 * 180.02562 * 16 14 13 19 19 C 1.39884 * 119.99640 * 185.53111 * 18 16 14 20 20 C 1.38602 * 119.95231 * 24.87009 * 19 18 16 21 21 C 1.38169 * 120.26078 * 179.97438 * 20 19 18 22 22 C 1.38401 * 119.83594 * 0.21545 * 21 20 19 23 23 C 1.37842 * 120.13002 * 359.97438 * 22 21 20 24 24 C 1.38720 * 120.82543 * 359.60142 * 23 22 21 25 25 O 1.36183 * 111.25942 * 181.05982 * 24 23 22 26 26 C 1.43782 * 109.17953 * 340.65740 * 25 24 23 27 27 C 1.51660 * 132.11846 * 179.10646 * 23 22 21 28 28 H 1.09001 * 109.46605 * 299.99974 * 1 2 3 29 29 H 1.09002 * 109.46624 * 59.99828 * 1 2 3 30 30 H 1.08996 * 109.46708 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47035 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46989 * 300.00043 * 3 2 1 33 33 H 1.09000 * 109.46849 * 60.00140 * 3 2 1 34 34 H 0.97003 * 120.00385 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47566 * 179.97438 * 12 2 1 36 36 H 1.08998 * 109.46887 * 59.99650 * 12 2 1 37 37 H 0.97003 * 120.00137 * 359.97438 * 13 12 2 38 38 H 0.96997 * 120.00533 * 5.53047 * 18 16 14 39 39 H 1.08001 * 119.87098 * 359.97438 * 20 19 18 40 40 H 1.07993 * 120.08104 * 180.24546 * 21 20 19 41 41 H 1.08007 * 119.93236 * 180.02562 * 22 21 20 42 42 H 1.09002 * 110.75405 * 269.54256 * 26 25 24 43 43 H 1.08998 * 110.91795 * 146.25351 * 26 25 24 44 44 H 1.08996 * 110.93462 * 313.73174 * 27 23 22 45 45 H 1.08999 * 110.93426 * 77.36814 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8261 -0.4205 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5747 -1.4782 3.7808 16 6 1.3796 0.2128 4.8888 17 8 0.6821 1.2000 4.7774 18 7 1.7053 -0.2477 6.1129 19 6 1.1470 0.3405 7.2527 20 6 -0.0692 0.9996 7.1661 21 6 -0.6267 1.5824 8.2880 22 6 0.0347 1.5112 9.5017 23 6 1.2464 0.8602 9.5923 24 6 1.8168 0.2619 8.4783 25 8 2.9963 -0.3424 8.7920 26 6 3.4917 0.2013 10.0274 27 6 2.1964 0.6363 10.7530 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7082 1.1610 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3267 -0.9869 6.2035 39 1 -0.5832 1.0579 6.2181 40 1 -1.5763 2.0918 8.2181 41 1 -0.3999 1.9658 10.3798 42 1 4.1366 1.0599 9.8405 43 1 4.0201 -0.5587 10.6029 44 1 2.3538 1.5592 11.3111 45 1 1.8316 -0.1551 11.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599983215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:03 Heat of formation + Delta-G solvation = -87.588634 kcal Electronic energy + Delta-G solvation = -27967.946782 eV Core-core repulsion = 23950.432310 eV Total energy + Delta-G solvation = -4017.514473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51091 -41.67374 -40.10084 -38.29753 -38.24449 -36.32158 -35.02461 -33.03921 -32.77842 -30.68656 -30.03052 -27.96628 -27.59445 -27.23396 -25.49629 -24.25940 -23.43576 -22.64164 -21.26114 -20.73403 -20.03983 -18.49037 -18.33330 -17.97440 -17.61432 -17.38047 -16.95816 -16.72772 -16.64247 -16.17974 -15.89934 -15.63681 -15.19107 -14.79045 -14.65324 -14.42231 -14.18246 -14.06176 -13.95507 -13.59147 -13.22303 -13.16106 -13.04585 -12.75958 -12.69369 -12.63815 -12.58498 -12.28190 -12.23056 -12.11442 -12.00339 -11.56178 -11.51718 -11.30607 -10.77990 -10.65831 -10.41622 -10.18816 -9.46816 -8.94665 -8.01661 -6.18205 -0.17136 0.26252 0.54197 1.15923 1.46051 1.47270 1.53754 1.98982 2.19697 2.43221 2.55977 2.70672 3.22198 3.28772 3.47348 3.65124 4.00393 4.13853 4.19453 4.31695 4.34724 4.36905 4.45255 4.55698 4.66498 4.71044 4.88911 4.89991 4.92783 4.98340 5.02959 5.04420 5.16282 5.16885 5.19697 5.35382 5.46391 5.48248 5.62859 5.64085 5.67167 5.80848 6.10737 6.11333 6.17534 6.26256 6.40473 6.57417 6.81130 6.88176 7.49701 8.97424 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.002212 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.020088 B =12652.921631 C =13261.336751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 C -0.125 4.125 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.142 3.858 13 N -0.676 5.676 14 C 0.503 3.497 15 O -0.548 6.548 16 C 0.514 3.486 17 O -0.514 6.514 18 N -0.631 5.631 19 C 0.104 3.896 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.159 4.159 24 C 0.062 3.938 25 O -0.327 6.327 26 C 0.042 3.958 27 C -0.101 4.101 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.415 0.585 38 H 0.427 0.573 39 H 0.140 0.860 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 2.334 28.663 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.183 4.183 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.019 3.981 13 N -0.328 5.328 14 C 0.283 3.717 15 O -0.427 6.427 16 C 0.296 3.704 17 O -0.389 6.389 18 N -0.277 5.277 19 C 0.010 3.990 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.160 4.160 24 C 0.015 3.985 25 O -0.242 6.242 26 C -0.032 4.032 27 C -0.138 4.138 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.265 0.735 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.135 0.865 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.448 2.254 28.315 28.409 hybrid contribution 0.451 -0.497 -1.345 1.503 sum 0.003 1.756 26.971 27.028 Atomic orbital electron populations 1.21715 0.97253 0.98967 1.00304 1.18385 0.93228 0.92993 0.90392 1.21718 0.98238 0.98020 1.00281 1.21203 1.31879 1.12315 0.91132 0.93035 1.25492 0.95125 0.95583 1.01141 1.69912 1.36902 1.23368 1.23719 0.85770 0.78632 0.78771 0.79346 1.20115 1.21102 1.20131 1.21605 0.98055 0.95599 0.82798 1.46038 1.50611 1.31383 1.04740 1.19985 0.81890 0.84878 0.84987 1.90739 1.38369 1.26633 1.86934 1.20149 0.81358 0.84183 0.84673 1.90718 1.36832 1.24737 1.86629 1.43026 1.45491 1.35825 1.03352 1.17370 0.95183 1.03456 0.82977 1.21296 0.92663 0.98378 1.01430 1.21302 1.01325 1.00291 0.91263 1.20740 0.92781 0.97563 0.98818 1.21082 0.98043 1.02389 0.94515 1.19361 0.88374 0.97453 0.93320 1.86815 1.34405 1.59250 1.43684 1.24173 0.96661 1.00689 0.81645 1.21893 0.91475 1.04831 0.95560 0.95044 0.91728 0.95723 0.95779 0.91711 0.95108 0.93022 0.92578 0.92512 0.74684 0.73455 0.84204 0.82525 0.82157 0.89911 0.85079 0.86487 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.35 0.50 -52.92 -0.03 2.32 16 3 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 4 C -0.53 -27.42 8.01 25.60 0.21 -27.21 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.39 5.15 84.65 0.44 1.82 16 7 N -0.90 -48.26 9.35 21.44 0.20 -48.06 16 8 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.14 5.92 4.50 86.38 0.39 6.31 16 13 N -0.68 -24.71 4.95 -464.54 -2.30 -27.01 16 14 C 0.50 17.74 7.88 87.23 0.69 18.43 16 15 O -0.55 -21.32 16.48 -3.27 -0.05 -21.37 16 16 C 0.51 16.28 7.69 87.23 0.67 16.95 16 17 O -0.51 -17.21 13.63 -3.37 -0.05 -17.26 16 18 N -0.63 -17.68 5.36 -304.23 -1.63 -19.31 16 19 C 0.10 2.71 6.45 38.34 0.25 2.96 16 20 C -0.12 -2.87 8.69 22.34 0.19 -2.67 16 21 C -0.12 -2.16 10.06 22.29 0.22 -1.94 16 22 C -0.08 -1.15 10.03 22.21 0.22 -0.93 16 23 C -0.16 -2.61 6.27 -19.54 -0.12 -2.74 16 24 C 0.06 1.39 6.93 22.79 0.16 1.55 16 25 O -0.33 -6.90 11.11 -95.64 -1.06 -7.96 16 26 C 0.04 0.48 8.01 72.56 0.58 1.06 16 27 C -0.10 -0.90 7.12 30.73 0.22 -0.68 16 28 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 33 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 34 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.41 14.61 5.63 -92.71 -0.52 14.09 16 38 H 0.43 11.38 8.26 -92.71 -0.77 10.62 16 39 H 0.14 3.81 5.76 -2.91 -0.02 3.79 16 40 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 43 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -63.04 368.01 2.14 -60.90 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.24 Total: 30.67 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.25 Total: 5.06 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.73 Total: -94.38 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.16 Total: -46.59 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -63.04 2.14 -60.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599983215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.686 kcal (2) G-P(sol) polarization free energy of solvation -63.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds