Wall clock time and date at job start Tue Mar 31 2020 16:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35086 * 120.51455 * 2 1 4 4 O 1.21294 * 120.14231 * 1.61091 * 3 2 1 5 5 C 1.50749 * 119.72137 * 181.63681 * 3 2 1 6 6 O 1.42977 * 109.64885 * 328.61714 * 5 3 2 7 7 C 1.35845 * 116.86971 * 46.32894 * 6 5 3 8 8 C 1.38692 * 120.50556 * 146.77934 * 7 6 5 9 9 C 1.37848 * 120.07505 * 180.33672 * 8 7 6 10 10 C 1.39723 * 120.10801 * 0.22857 * 9 8 7 11 11 C 1.47608 * 120.05334 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00170 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00130 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00198 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47069 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47102 * 299.99920 * 15 14 13 17 17 C 1.53000 * 109.47117 * 60.00337 * 15 14 13 18 18 C 1.50703 * 109.46933 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00099 * 1.35179 * 18 15 14 20 20 C 1.37881 * 119.99915 * 181.34952 * 18 15 14 21 21 N 1.31515 * 119.99788 * 193.98296 * 20 18 15 22 22 Si 1.86798 * 119.99899 * 13.97637 * 20 18 15 23 23 H 1.48489 * 109.46972 * 84.55156 * 22 20 18 24 24 H 1.48504 * 109.46885 * 204.55091 * 22 20 18 25 25 H 1.48499 * 109.46995 * 324.54636 * 22 20 18 26 26 C 1.39766 * 119.89268 * 0.02591 * 10 9 8 27 27 C 1.38095 * 119.70187 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.47344 * 270.01906 * 1 2 3 29 29 H 1.08999 * 109.47362 * 30.02084 * 1 2 3 30 30 H 1.09002 * 109.47312 * 150.02425 * 1 2 3 31 31 H 1.09000 * 109.44847 * 88.67427 * 5 3 2 32 32 H 1.09001 * 109.44225 * 208.60717 * 5 3 2 33 33 H 1.08002 * 119.96367 * 0.61077 * 8 7 6 34 34 H 1.07994 * 119.94285 * 180.25766 * 9 8 7 35 35 H 0.97001 * 120.00077 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47067 * 299.99841 * 14 13 11 37 37 H 1.08999 * 109.47592 * 59.99926 * 14 13 11 38 38 H 1.08994 * 109.47332 * 69.37062 * 16 15 14 39 39 H 1.09002 * 109.46981 * 189.36895 * 16 15 14 40 40 H 1.08996 * 109.46960 * 309.36744 * 16 15 14 41 41 H 1.08995 * 109.47211 * 59.99609 * 17 15 14 42 42 H 1.09003 * 109.47245 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46766 * 299.99825 * 17 15 14 44 44 H 0.96998 * 119.99864 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.15176 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1509 1.1638 0.0000 4 8 1.5568 2.2209 0.0295 5 6 3.6578 1.1432 -0.0374 6 8 4.1395 -0.0229 0.6353 7 6 3.5340 -1.2006 0.3324 8 6 4.2564 -2.3845 0.3345 9 6 3.6347 -3.5737 0.0189 10 6 2.2764 -3.5891 -0.3085 11 6 1.6120 -4.8631 -0.6468 12 8 0.4301 -4.8754 -0.9320 13 7 2.3154 -6.0127 -0.6395 14 6 1.6561 -7.2770 -0.9757 15 6 2.6709 -8.4191 -0.8932 16 6 3.8112 -8.1604 -1.8799 17 6 3.2338 -8.4995 0.5272 18 6 1.9925 -9.7198 -1.2385 19 1 0.9480 -9.7278 -1.5127 20 6 2.7055 -10.8994 -1.2043 21 7 2.2101 -11.9834 -1.7605 22 14 4.3749 -10.9579 -0.3683 23 1 4.1915 -11.1813 1.0882 24 1 5.1772 -12.0680 -0.9422 25 1 5.0831 -9.6711 -0.5866 26 6 1.5482 -2.3962 -0.3163 27 6 2.1772 -1.2085 0.0008 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9949 1.1293 -1.0739 32 1 4.0452 2.0333 0.4583 33 1 5.3062 -2.3755 0.5879 34 1 4.1982 -4.4949 0.0252 35 1 3.2582 -6.0030 -0.4115 36 1 0.8434 -7.4611 -0.2730 37 1 1.2554 -7.2200 -1.9878 38 1 4.4045 -7.3133 -1.5356 39 1 4.4444 -9.0454 -1.9436 40 1 3.3973 -7.9382 -2.8634 41 1 2.4214 -8.6838 1.2301 42 1 3.9564 -9.3135 0.5862 43 1 3.7243 -7.5589 0.7774 44 1 2.7115 -12.8134 -1.7361 45 1 0.4980 -2.4034 -0.5684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600000464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:49 Heat of formation + Delta-G solvation = -49.859292 kcal Electronic energy + Delta-G solvation = -28335.533634 eV Core-core repulsion = 24319.655229 eV Total energy + Delta-G solvation = -4015.878406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97855 -39.97375 -39.04186 -37.81122 -36.74201 -36.03967 -33.48351 -31.67210 -31.16077 -30.32612 -29.74719 -27.11304 -26.45463 -25.80893 -24.95448 -24.15327 -22.72339 -21.39490 -19.70091 -19.49512 -19.12721 -17.92016 -17.61919 -16.81367 -16.22600 -16.19602 -15.71272 -15.50561 -15.22545 -15.10319 -15.02307 -14.71566 -14.51016 -14.12406 -13.79720 -13.48843 -13.24479 -13.20501 -12.96456 -12.77059 -12.64607 -12.54948 -12.26986 -12.10309 -11.76208 -11.61418 -11.36884 -10.82627 -10.50149 -10.46022 -10.38686 -10.22788 -10.12632 -9.79779 -9.18337 -9.11560 -8.74266 -8.66788 -8.50529 -8.29732 -6.18954 -4.16683 0.38498 0.75136 1.76617 2.04442 2.66755 2.84686 3.20058 3.26842 3.35370 3.37232 3.47547 3.62491 4.17612 4.31277 4.38655 4.52862 4.62857 4.71976 4.73295 4.82455 4.93694 5.01903 5.11504 5.20837 5.31403 5.47293 5.66495 5.72891 5.84340 5.93406 5.97456 5.98985 6.08078 6.28343 6.36593 6.42279 6.44845 6.56001 6.63009 6.66631 6.82682 6.88331 7.15000 7.22817 7.36593 7.66526 7.77528 8.36881 8.43931 8.86328 9.44568 10.94082 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.002479 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.129776 B =11293.630198 C =12039.475227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.551 5.551 3 C 0.487 3.513 4 O -0.511 6.511 5 C 0.052 3.948 6 O -0.300 6.300 7 C 0.097 3.903 8 C -0.112 4.112 9 C -0.076 4.076 10 C -0.116 4.116 11 C 0.551 3.449 12 O -0.542 6.542 13 N -0.713 5.713 14 C 0.141 3.859 15 C 0.028 3.972 16 C -0.143 4.143 17 C -0.149 4.149 18 C -0.514 4.514 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.890 5.890 22 Si 0.885 3.115 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.249 1.249 26 C -0.066 4.066 27 C 0.084 3.916 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.029 0.971 44 H 0.265 0.735 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 23.801 4.181 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.277 5.277 3 C 0.275 3.725 4 O -0.386 6.386 5 C -0.026 4.026 6 O -0.214 6.214 7 C 0.050 3.950 8 C -0.131 4.131 9 C -0.095 4.095 10 C -0.120 4.120 11 C 0.337 3.663 12 O -0.421 6.421 13 N -0.364 5.364 14 C 0.019 3.981 15 C 0.027 3.973 16 C -0.201 4.201 17 C -0.206 4.206 18 C -0.552 4.552 19 H 0.095 0.905 20 C -0.127 4.127 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.234 1.234 25 H -0.175 1.175 26 C -0.088 4.088 27 C -0.010 4.010 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.232 0.768 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.724 24.247 4.063 25.034 hybrid contribution 1.124 -0.242 0.505 1.255 sum 5.848 24.005 4.568 25.126 Atomic orbital electron populations 1.21965 0.76747 1.04578 1.03471 1.45559 1.07942 1.04138 1.70027 1.21541 0.91294 0.83387 0.76277 1.90778 1.70788 1.29422 1.47563 1.23235 0.89216 0.89041 1.01090 1.86190 1.58639 1.13281 1.63328 1.18835 0.88885 0.86970 1.00263 1.20453 1.00574 0.89389 1.02639 1.21230 0.93434 0.98053 0.96811 1.19930 0.94077 0.93879 1.04100 1.18020 0.86570 0.83514 0.78236 1.90776 1.15338 1.86929 1.49060 1.46248 1.13763 1.07644 1.68751 1.21588 0.95810 0.80171 1.00535 1.18729 0.92469 0.94500 0.91593 1.22311 0.98551 0.99420 0.99784 1.22376 1.00221 0.98494 0.99486 1.20699 0.98584 0.88576 1.47337 0.90500 1.24979 0.97629 0.95638 0.94493 1.69948 1.39406 1.01290 1.42004 0.87295 0.84975 0.76642 0.79293 1.21324 1.23390 1.17489 1.20753 1.01242 0.88984 0.97782 1.17939 0.90802 0.86794 1.05501 0.91201 0.89423 0.89502 0.88066 0.83562 0.83517 0.84186 0.76760 0.91651 0.91560 0.95982 0.92417 0.93300 0.92674 0.93942 0.95226 0.92512 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.23 59.84 0.61 1.22 16 2 N -0.55 -5.47 3.12 -120.60 -0.38 -5.85 16 3 C 0.49 4.87 7.67 -10.82 -0.08 4.78 16 4 O -0.51 -6.41 16.77 5.55 0.09 -6.32 16 5 C 0.05 0.36 7.17 36.03 0.26 0.61 16 6 O -0.30 -2.60 10.43 -19.25 -0.20 -2.80 16 7 C 0.10 0.92 6.46 -38.88 -0.25 0.67 16 8 C -0.11 -0.92 9.98 -39.56 -0.39 -1.32 16 9 C -0.08 -0.70 9.53 -39.17 -0.37 -1.07 16 10 C -0.12 -1.37 5.88 -104.95 -0.62 -1.99 16 11 C 0.55 8.41 7.76 -12.44 -0.10 8.31 16 12 O -0.54 -10.17 16.34 5.29 0.09 -10.08 16 13 N -0.71 -10.79 4.95 -61.32 -0.30 -11.10 16 14 C 0.14 2.66 4.49 -4.04 -0.02 2.64 16 15 C 0.03 0.58 0.50 -155.66 -0.08 0.51 16 16 C -0.14 -2.75 7.53 37.16 0.28 -2.47 16 17 C -0.15 -2.85 7.52 37.16 0.28 -2.57 16 18 C -0.51 -13.34 8.62 -34.44 -0.30 -13.64 16 19 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.08 2.04 5.32 -17.82 -0.09 1.95 16 21 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 22 Si 0.89 20.40 22.79 -169.99 -3.87 16.53 16 23 H -0.29 -6.57 7.10 56.52 0.40 -6.17 16 24 H -0.31 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.25 -5.13 4.65 56.52 0.26 -4.87 16 26 C -0.07 -0.74 8.89 -39.06 -0.35 -1.08 16 27 C 0.08 0.85 6.38 -83.51 -0.53 0.32 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.71 7.49 -51.93 -0.39 0.32 16 30 H 0.09 0.63 5.95 -51.93 -0.31 0.32 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.15 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.05 6.38 -52.49 -0.34 0.71 16 35 H 0.40 5.04 4.27 -40.82 -0.17 4.87 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 39 H 0.06 1.19 4.30 -51.93 -0.22 0.97 16 40 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 43 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.15 1.64 5.70 -52.49 -0.30 1.34 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -32.80 352.82 -5.89 -38.69 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.65 Total: 4.02 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.75 Total: -3.13 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.09 Total: -42.23 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.02 Total: -19.20 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -3.87 Total: 16.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.80 -5.89 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.173 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds