Wall clock time and date at job start Tue Mar 31 2020 16:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35086 * 120.51455 * 2 1 4 4 O 1.21294 * 120.14231 * 1.61091 * 3 2 1 5 5 C 1.50749 * 119.72137 * 181.63681 * 3 2 1 6 6 O 1.42977 * 109.64885 * 328.61714 * 5 3 2 7 7 C 1.35845 * 116.86971 * 46.32894 * 6 5 3 8 8 C 1.38692 * 120.50556 * 146.77934 * 7 6 5 9 9 C 1.37848 * 120.07505 * 180.33672 * 8 7 6 10 10 C 1.39723 * 120.10801 * 0.22857 * 9 8 7 11 11 C 1.47608 * 120.05334 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00170 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00130 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00198 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47069 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47102 * 299.99920 * 15 14 13 17 17 C 1.53000 * 109.47117 * 60.00337 * 15 14 13 18 18 C 1.50703 * 109.46933 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00099 * 1.35179 * 18 15 14 20 20 C 1.37881 * 119.99915 * 181.34952 * 18 15 14 21 21 N 1.31515 * 119.99788 * 193.98296 * 20 18 15 22 22 Si 1.86798 * 119.99899 * 13.97637 * 20 18 15 23 23 H 1.48489 * 109.46972 * 84.55156 * 22 20 18 24 24 H 1.48504 * 109.46885 * 204.55091 * 22 20 18 25 25 H 1.48499 * 109.46995 * 324.54636 * 22 20 18 26 26 C 1.39766 * 119.89268 * 0.02591 * 10 9 8 27 27 C 1.38095 * 119.70187 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.47344 * 270.01906 * 1 2 3 29 29 H 1.08999 * 109.47362 * 30.02084 * 1 2 3 30 30 H 1.09002 * 109.47312 * 150.02425 * 1 2 3 31 31 H 1.09000 * 109.44847 * 88.67427 * 5 3 2 32 32 H 1.09001 * 109.44225 * 208.60717 * 5 3 2 33 33 H 1.08002 * 119.96367 * 0.61077 * 8 7 6 34 34 H 1.07994 * 119.94285 * 180.25766 * 9 8 7 35 35 H 0.97001 * 120.00077 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47067 * 299.99841 * 14 13 11 37 37 H 1.08999 * 109.47592 * 59.99926 * 14 13 11 38 38 H 1.08994 * 109.47332 * 69.37062 * 16 15 14 39 39 H 1.09002 * 109.46981 * 189.36895 * 16 15 14 40 40 H 1.08996 * 109.46960 * 309.36744 * 16 15 14 41 41 H 1.08995 * 109.47211 * 59.99609 * 17 15 14 42 42 H 1.09003 * 109.47245 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46766 * 299.99825 * 17 15 14 44 44 H 0.96998 * 119.99864 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.15176 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1509 1.1638 0.0000 4 8 1.5568 2.2209 0.0295 5 6 3.6578 1.1432 -0.0374 6 8 4.1395 -0.0229 0.6353 7 6 3.5340 -1.2006 0.3324 8 6 4.2564 -2.3845 0.3345 9 6 3.6347 -3.5737 0.0189 10 6 2.2764 -3.5891 -0.3085 11 6 1.6120 -4.8631 -0.6468 12 8 0.4301 -4.8754 -0.9320 13 7 2.3154 -6.0127 -0.6395 14 6 1.6561 -7.2770 -0.9757 15 6 2.6709 -8.4191 -0.8932 16 6 3.8112 -8.1604 -1.8799 17 6 3.2338 -8.4995 0.5272 18 6 1.9925 -9.7198 -1.2385 19 1 0.9480 -9.7278 -1.5127 20 6 2.7055 -10.8994 -1.2043 21 7 2.2101 -11.9834 -1.7605 22 14 4.3749 -10.9579 -0.3683 23 1 4.1915 -11.1813 1.0882 24 1 5.1772 -12.0680 -0.9422 25 1 5.0831 -9.6711 -0.5866 26 6 1.5482 -2.3962 -0.3163 27 6 2.1772 -1.2085 0.0008 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9949 1.1293 -1.0739 32 1 4.0452 2.0333 0.4583 33 1 5.3062 -2.3755 0.5879 34 1 4.1982 -4.4949 0.0252 35 1 3.2582 -6.0030 -0.4115 36 1 0.8434 -7.4611 -0.2730 37 1 1.2554 -7.2200 -1.9878 38 1 4.4045 -7.3133 -1.5356 39 1 4.4444 -9.0454 -1.9436 40 1 3.3973 -7.9382 -2.8634 41 1 2.4214 -8.6838 1.2301 42 1 3.9564 -9.3135 0.5862 43 1 3.7243 -7.5589 0.7774 44 1 2.7115 -12.8134 -1.7361 45 1 0.4980 -2.4034 -0.5684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600000464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:48 Heat of formation + Delta-G solvation = -73.858259 kcal Electronic energy + Delta-G solvation = -28336.574308 eV Core-core repulsion = 24319.655229 eV Total energy + Delta-G solvation = -4016.919079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.69304 -41.09134 -39.90021 -38.73884 -38.15282 -36.83385 -35.03841 -33.47928 -31.96387 -31.13354 -30.41343 -28.13937 -27.93983 -27.16048 -26.63489 -24.99106 -23.56119 -22.39742 -20.99683 -20.42791 -20.25065 -18.80864 -18.33290 -18.03021 -17.74726 -17.12209 -16.92800 -16.72932 -16.35131 -16.14163 -15.91414 -15.48032 -15.41350 -15.10037 -14.97154 -14.71633 -14.59268 -14.37878 -14.11968 -14.01738 -13.93539 -13.71416 -13.46178 -13.23325 -12.91847 -12.41426 -12.36885 -12.33299 -12.12341 -11.91895 -11.72729 -11.56913 -11.25586 -11.11828 -10.96042 -10.59038 -10.35484 -10.08662 -9.79406 -9.05474 -8.27330 -6.29289 -0.41168 0.01401 1.04754 1.35751 1.39691 1.41602 1.54799 1.77762 2.11079 2.23706 2.38172 2.69310 2.81444 3.09168 3.46922 3.65757 3.87039 3.97085 4.02024 4.03304 4.10367 4.19416 4.34828 4.35741 4.36338 4.45471 4.59419 4.65816 4.70082 4.80727 4.86490 4.90148 4.94934 4.99829 5.10561 5.14997 5.19420 5.20443 5.36434 5.44089 5.56265 5.68854 5.75041 5.83958 6.14219 6.32617 6.49851 6.60088 6.75833 7.23437 7.35760 8.89914 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.002479 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.129776 B =11293.630198 C =12039.475227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.557 5.557 3 C 0.480 3.520 4 O -0.544 6.544 5 C 0.055 3.945 6 O -0.300 6.300 7 C 0.101 3.899 8 C -0.101 4.101 9 C -0.061 4.061 10 C -0.134 4.134 11 C 0.552 3.448 12 O -0.587 6.587 13 N -0.701 5.701 14 C 0.156 3.844 15 C 0.028 3.972 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.518 4.518 19 H 0.026 0.974 20 C 0.014 3.986 21 N -0.948 5.948 22 Si 0.945 3.055 23 H -0.282 1.282 24 H -0.318 1.318 25 H -0.197 1.197 26 C -0.072 4.072 27 C 0.075 3.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.413 0.587 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.264 0.736 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 26.421 5.639 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.282 5.282 3 C 0.270 3.730 4 O -0.422 6.422 5 C -0.023 4.023 6 O -0.214 6.214 7 C 0.054 3.946 8 C -0.120 4.120 9 C -0.081 4.081 10 C -0.138 4.138 11 C 0.341 3.659 12 O -0.469 6.469 13 N -0.353 5.353 14 C 0.033 3.967 15 C 0.026 3.974 16 C -0.201 4.201 17 C -0.206 4.206 18 C -0.556 4.556 19 H 0.044 0.956 20 C -0.183 4.183 21 N -0.588 5.588 22 Si 0.774 3.226 23 H -0.210 1.210 24 H -0.248 1.248 25 H -0.120 1.120 26 C -0.093 4.093 27 C -0.019 4.019 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.189 0.811 33 H 0.198 0.802 34 H 0.184 0.816 35 H 0.252 0.748 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.015 26.907 5.536 28.912 hybrid contribution -0.349 -0.964 0.014 1.026 sum 8.666 25.943 5.550 27.909 Atomic orbital electron populations 1.22029 0.76555 1.04753 1.03798 1.45717 1.08436 1.04354 1.69733 1.22196 0.92703 0.82764 0.75329 1.90762 1.71750 1.30408 1.49241 1.23497 0.86698 0.89168 1.02893 1.86196 1.58274 1.13334 1.63607 1.19095 0.88485 0.87921 0.99082 1.20777 1.01860 0.88186 1.01165 1.21469 0.91977 0.99567 0.95054 1.19610 0.95401 0.91854 1.06900 1.18532 0.86038 0.84456 0.76877 1.90759 1.17527 1.87615 1.50961 1.45919 1.14351 1.06211 1.68833 1.21087 0.95172 0.81694 0.98788 1.18661 0.93133 0.91953 0.93613 1.22244 0.97940 1.00818 0.99056 1.22321 1.00077 1.00792 0.97431 1.21046 0.96776 0.91616 1.46172 0.95581 1.25907 1.02362 0.94984 0.95074 1.70124 1.41788 1.02230 1.44633 0.86340 0.80113 0.78462 0.77683 1.20991 1.24818 1.12012 1.20681 1.01007 0.89460 0.98197 1.17972 0.91413 0.86381 1.06141 0.90829 0.89597 0.88984 0.85569 0.81113 0.80242 0.81630 0.74821 0.93705 0.93875 0.90993 0.93585 0.94073 0.93541 0.94622 0.90273 0.92756 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.23 127.77 1.31 2.45 16 2 N -0.56 -10.44 3.12 -653.68 -2.04 -12.48 16 3 C 0.48 8.82 7.67 87.62 0.67 9.50 16 4 O -0.54 -13.25 16.77 -3.07 -0.05 -13.30 16 5 C 0.05 0.56 7.17 71.25 0.51 1.07 16 6 O -0.30 -3.97 10.43 -91.81 -0.96 -4.93 16 7 C 0.10 1.53 6.46 22.73 0.15 1.68 16 8 C -0.10 -1.15 9.98 22.29 0.22 -0.92 16 9 C -0.06 -0.84 9.53 22.54 0.21 -0.62 16 10 C -0.13 -2.84 5.88 -20.08 -0.12 -2.96 16 11 C 0.55 16.20 7.76 86.72 0.67 16.87 16 12 O -0.59 -22.47 16.34 -3.98 -0.07 -22.53 16 13 N -0.70 -19.46 4.95 -466.19 -2.31 -21.77 16 14 C 0.16 5.87 4.49 86.38 0.39 6.26 16 15 C 0.03 1.10 0.50 -52.93 -0.03 1.07 16 16 C -0.14 -4.99 7.53 71.98 0.54 -4.45 16 17 C -0.15 -5.15 7.52 71.98 0.54 -4.61 16 18 C -0.52 -27.76 8.62 25.60 0.22 -27.54 16 19 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 20 C 0.01 0.77 5.32 84.66 0.45 1.22 16 21 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 22 Si 0.94 41.07 22.79 68.60 1.56 42.64 16 23 H -0.28 -12.08 7.10 99.48 0.71 -11.37 16 24 H -0.32 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.20 -6.94 4.65 99.48 0.46 -6.48 16 26 C -0.07 -1.52 8.89 22.61 0.20 -1.32 16 27 C 0.07 1.38 6.38 38.10 0.24 1.62 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.43 7.49 -2.39 -0.02 1.41 16 30 H 0.09 1.38 5.95 -2.39 -0.01 1.37 16 31 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 1.37 6.38 -2.91 -0.02 1.35 16 35 H 0.41 8.40 4.27 -92.71 -0.40 8.00 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.79 7.13 -2.39 -0.02 1.77 16 39 H 0.05 1.71 4.30 -2.39 -0.01 1.70 16 40 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.29 2.25 -2.39 -0.01 1.28 16 43 H 0.08 1.94 6.86 -2.39 -0.02 1.92 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.14 3.12 5.70 -2.91 -0.02 3.10 16 Total: -1.00 -77.18 352.82 3.04 -74.15 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.41 Total: 16.70 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.19 Total: -0.67 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -4.05 Total: -92.05 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.07 Total: -40.76 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.56 Total: 42.64 kcal Total: -77.18 3.04 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.288 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds