Wall clock time and date at job start Tue Mar 31 2020 17:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 N 1.46502 * 109.47078 * 119.99819 * 2 1 3 5 5 C 1.46505 * 120.00169 * 296.07293 * 4 2 1 6 6 C 1.50699 * 109.46981 * 89.99624 * 5 4 2 7 7 H 1.08006 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00210 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47124 * 60.00057 * 10 8 6 12 12 H 1.48500 * 109.46911 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46915 * 300.00250 * 10 8 6 14 14 C 1.34779 * 120.00054 * 116.07184 * 4 2 1 15 15 O 1.21281 * 119.99716 * 185.32569 * 14 4 2 16 16 C 1.50698 * 119.99744 * 5.32056 * 14 4 2 17 17 C 1.53009 * 109.47026 * 183.21536 * 16 14 4 18 18 H 1.08998 * 109.43499 * 55.08349 * 17 16 14 19 19 O 1.42925 * 109.43480 * 295.21453 * 17 16 14 20 20 C 1.36012 * 116.99298 * 285.33127 * 19 17 16 21 21 C 1.38451 * 120.42969 * 148.88242 * 20 19 17 22 22 C 1.38285 * 119.90090 * 178.40356 * 21 20 19 23 23 C 1.38285 * 120.23860 * 0.02562 * 22 21 20 24 24 C 1.38272 * 120.19129 * 0.29826 * 23 22 21 25 25 C 1.38574 * 119.84313 * 359.94657 * 24 23 22 26 26 N 1.40159 * 120.55248 * 179.35751 * 25 24 23 27 27 C 1.34952 * 119.20117 * 190.97369 * 26 25 24 28 28 O 1.21301 * 120.13282 * 186.03907 * 27 26 25 29 29 H 1.08999 * 109.47247 * 305.52519 * 1 2 3 30 30 H 1.08995 * 109.46920 * 65.52010 * 1 2 3 31 31 H 1.08996 * 109.47090 * 185.52168 * 1 2 3 32 32 H 1.08997 * 109.47392 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.46734 * 173.68171 * 3 2 1 34 34 H 1.08995 * 109.46998 * 293.68259 * 3 2 1 35 35 H 1.08995 * 109.47134 * 53.68922 * 3 2 1 36 36 H 1.09000 * 109.46947 * 209.99862 * 5 4 2 37 37 H 1.08998 * 109.46799 * 329.99836 * 5 4 2 38 38 H 0.96994 * 120.00041 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.47587 * 303.21590 * 16 14 4 40 40 H 1.09003 * 109.47168 * 63.21802 * 16 14 4 41 41 H 1.08000 * 120.04920 * 358.42433 * 21 20 19 42 42 H 1.07999 * 119.88820 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.91091 * 180.29973 * 23 22 21 44 44 H 1.07995 * 120.07704 * 179.97438 * 24 23 22 45 45 H 0.97005 * 120.39875 * 10.99843 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7367 -0.1419 2.5251 6 6 0.4369 -0.7072 3.0369 7 1 -0.1232 -1.4057 2.4329 8 6 -0.0367 -0.3335 4.2767 9 7 0.6456 0.5167 5.0124 10 14 -1.6476 -1.0347 4.9114 11 1 -1.5437 -2.5135 4.9979 12 1 -1.9330 -0.4784 6.2584 13 1 -2.7468 -0.6692 3.9823 14 6 2.7266 -1.8308 1.0742 15 8 3.0479 -2.4538 2.0638 16 6 3.1191 -2.3313 -0.2920 17 6 3.8405 -3.6737 -0.1554 18 1 3.2095 -4.3700 0.3970 19 8 5.0688 -3.4839 0.5503 20 6 6.0879 -2.8953 -0.1315 21 6 7.0150 -2.1104 0.5328 22 6 8.0656 -1.5441 -0.1657 23 6 8.1936 -1.7586 -1.5258 24 6 7.2679 -2.5359 -2.1973 25 6 6.2101 -3.1019 -1.5039 26 7 5.2558 -3.8812 -2.1721 27 6 4.1240 -4.2328 -1.5267 28 8 3.3379 -4.9958 -2.0475 29 1 -0.3634 0.5971 0.8364 30 1 -0.3633 0.4258 -0.9352 31 1 -0.3633 -1.0229 0.0989 32 1 1.8933 -0.5138 -0.8899 33 1 3.1241 1.4445 0.1131 34 1 1.7719 1.9226 -0.9411 35 1 1.5874 1.9879 0.8281 36 1 2.5434 -0.4102 3.2074 37 1 1.6608 0.9436 2.4613 38 1 0.3122 0.7799 5.8844 39 1 2.2254 -2.4596 -0.9026 40 1 3.7830 -1.6088 -0.7668 41 1 6.9179 -1.9408 1.5950 42 1 8.7888 -0.9322 0.3528 43 1 9.0188 -1.3178 -2.0651 44 1 7.3695 -2.7018 -3.2596 45 1 5.4073 -4.1648 -3.0873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608813970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:50 Heat of formation + Delta-G solvation = -75.127413 kcal Electronic energy + Delta-G solvation = -29489.187876 eV Core-core repulsion = 25472.213763 eV Total energy + Delta-G solvation = -4016.974114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75672 -39.25242 -38.98007 -37.56698 -35.94392 -35.30727 -32.92312 -32.04883 -30.85789 -30.52058 -29.32702 -27.57037 -26.78260 -25.37292 -23.74303 -23.02698 -22.63386 -21.30382 -19.63091 -19.18475 -18.09889 -18.07859 -16.76801 -16.58096 -16.42097 -16.01393 -15.74096 -15.27894 -14.99960 -14.84618 -14.38632 -14.21567 -14.05337 -14.02963 -13.52210 -13.29853 -13.09861 -12.85651 -12.61127 -12.31175 -12.24187 -11.75316 -11.72041 -11.57220 -11.41925 -11.35486 -11.10089 -11.04000 -10.91939 -10.84603 -10.54747 -10.40977 -10.19126 -10.01149 -9.54110 -8.93372 -8.86258 -8.39302 -8.10750 -7.66139 -6.01193 -4.04191 0.87168 1.07929 2.08420 2.53856 3.18008 3.33458 3.36100 3.38406 3.43403 3.52442 3.67728 3.99635 4.40463 4.47401 4.54785 4.73258 4.87260 4.98564 5.05463 5.16032 5.18631 5.24173 5.33703 5.43257 5.50579 5.56667 5.62689 5.64142 5.82162 5.96758 5.97044 6.14130 6.23999 6.24691 6.32961 6.35698 6.47486 6.57198 6.59763 6.91262 7.10273 7.24894 7.46416 7.55499 7.56306 7.95239 8.27397 8.40976 8.92190 9.07702 9.59818 11.06989 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.003535 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.403252 B = 7918.744585 C = 8192.268670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 C -0.160 4.160 4 N -0.592 5.592 5 C 0.249 3.751 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.511 3.489 15 O -0.521 6.521 16 C -0.168 4.168 17 C 0.102 3.898 18 H 0.157 0.843 19 O -0.275 6.275 20 C 0.084 3.916 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.127 4.127 25 C 0.086 3.914 26 N -0.659 5.659 27 C 0.498 3.502 28 O -0.507 6.507 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 -1.228 -17.056 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 C -0.218 4.218 4 N -0.324 5.324 5 C 0.130 3.870 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.296 3.704 15 O -0.397 6.397 16 C -0.209 4.209 17 C 0.042 3.958 18 H 0.174 0.826 19 O -0.188 6.188 20 C 0.037 3.963 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.009 4.009 26 N -0.306 5.306 27 C 0.285 3.715 28 O -0.380 6.380 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.861 -1.930 -16.243 20.808 hybrid contribution -0.965 -0.368 -0.359 1.094 sum 11.896 -2.299 -16.603 20.553 Atomic orbital electron populations 1.22142 0.94653 1.02905 1.01728 1.21007 0.95175 0.93275 0.87762 1.22146 1.01162 0.96371 1.02165 1.48309 1.51764 1.23526 1.08822 1.19242 0.96940 0.93920 0.76917 1.21397 1.05922 1.26382 1.02036 0.92421 1.24910 0.97489 0.95178 0.96496 1.69915 1.38667 1.33259 1.11711 0.86621 0.83678 0.79573 0.77923 1.20219 1.21289 1.20337 1.19734 0.79544 0.81797 0.89370 1.90731 1.54745 1.55419 1.38846 1.22317 1.02487 0.96286 0.99836 1.22636 0.85793 0.98611 0.88745 0.82585 1.86510 1.19001 1.74851 1.38428 1.18758 0.91914 0.97129 0.88512 1.20691 0.94537 0.95555 1.01560 1.21027 0.97713 0.99897 0.94200 1.20931 0.99090 0.99019 0.94538 1.20584 0.94621 0.99743 0.99782 1.18075 0.93074 0.98297 0.91461 1.43688 1.18051 1.51642 1.17194 1.21511 0.80754 0.80832 0.88418 1.90804 1.46181 1.33024 1.68040 0.90281 0.93274 0.92573 0.91135 0.92789 0.92378 0.91158 0.94154 0.94719 0.92776 0.87390 0.88677 0.84024 0.84937 0.85266 0.85221 0.74776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.40 37.16 0.31 -2.22 16 2 C 0.13 2.11 3.15 -67.93 -0.21 1.89 16 3 C -0.16 -2.30 8.93 37.16 0.33 -1.97 16 4 N -0.59 -12.04 2.39 -167.47 -0.40 -12.44 16 5 C 0.25 6.26 4.69 -5.19 -0.02 6.24 16 6 C -0.52 -14.23 8.01 -34.44 -0.28 -14.51 16 7 H 0.06 1.59 7.52 -52.48 -0.39 1.19 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.51 10.26 7.55 -10.99 -0.08 10.18 16 15 O -0.52 -12.67 15.01 -10.34 -0.16 -12.83 16 16 C -0.17 -2.51 3.58 -27.88 -0.10 -2.61 16 17 C 0.10 1.54 2.75 -27.84 -0.08 1.46 16 18 H 0.16 2.47 8.01 -51.93 -0.42 2.05 16 19 O -0.27 -4.40 9.29 -35.67 -0.33 -4.73 16 20 C 0.08 1.12 5.84 -39.10 -0.23 0.89 16 21 C -0.10 -1.23 9.99 -39.49 -0.39 -1.63 16 22 C -0.11 -0.98 10.04 -39.55 -0.40 -1.37 16 23 C -0.12 -0.91 10.04 -39.55 -0.40 -1.31 16 24 C -0.13 -1.05 9.94 -39.44 -0.39 -1.45 16 25 C 0.09 0.95 6.57 -83.52 -0.55 0.40 16 26 N -0.66 -7.11 5.46 -9.70 -0.05 -7.16 16 27 C 0.50 6.82 7.19 -10.87 -0.08 6.74 16 28 O -0.51 -8.14 17.95 5.54 0.10 -8.04 16 29 H 0.08 1.49 7.32 -51.93 -0.38 1.11 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.96 8.06 -51.93 -0.42 0.55 16 32 H 0.07 0.93 5.77 -51.93 -0.30 0.64 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.14 6.85 -51.93 -0.36 0.79 16 36 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 37 H 0.03 0.88 6.37 -51.93 -0.33 0.55 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.11 1.43 7.46 -51.93 -0.39 1.05 16 40 H 0.09 1.26 7.63 -51.93 -0.40 0.87 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.41 3.39 8.87 -40.82 -0.36 3.02 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -34.01 372.70 -8.40 -42.40 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.22 Total: 3.57 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.66 Total: 2.36 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.28 Total: -45.10 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.39 Total: -25.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.01 -8.40 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.723 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds