Wall clock time and date at job start Tue Mar 31 2020 17:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 N 1.46502 * 109.47078 * 119.99819 * 2 1 3 5 5 C 1.46505 * 120.00169 * 296.07293 * 4 2 1 6 6 C 1.50699 * 109.46981 * 89.99624 * 5 4 2 7 7 H 1.08006 * 120.00200 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00210 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47124 * 60.00057 * 10 8 6 12 12 H 1.48500 * 109.46911 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46915 * 300.00250 * 10 8 6 14 14 C 1.34779 * 120.00054 * 116.07184 * 4 2 1 15 15 O 1.21281 * 119.99716 * 185.32569 * 14 4 2 16 16 C 1.50698 * 119.99744 * 5.32056 * 14 4 2 17 17 C 1.53009 * 109.47026 * 183.21536 * 16 14 4 18 18 H 1.08998 * 109.43499 * 55.08349 * 17 16 14 19 19 O 1.42925 * 109.43480 * 295.21453 * 17 16 14 20 20 C 1.36012 * 116.99298 * 285.33127 * 19 17 16 21 21 C 1.38451 * 120.42969 * 148.88242 * 20 19 17 22 22 C 1.38285 * 119.90090 * 178.40356 * 21 20 19 23 23 C 1.38285 * 120.23860 * 0.02562 * 22 21 20 24 24 C 1.38272 * 120.19129 * 0.29826 * 23 22 21 25 25 C 1.38574 * 119.84313 * 359.94657 * 24 23 22 26 26 N 1.40159 * 120.55248 * 179.35751 * 25 24 23 27 27 C 1.34952 * 119.20117 * 190.97369 * 26 25 24 28 28 O 1.21301 * 120.13282 * 186.03907 * 27 26 25 29 29 H 1.08999 * 109.47247 * 305.52519 * 1 2 3 30 30 H 1.08995 * 109.46920 * 65.52010 * 1 2 3 31 31 H 1.08996 * 109.47090 * 185.52168 * 1 2 3 32 32 H 1.08997 * 109.47392 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.46734 * 173.68171 * 3 2 1 34 34 H 1.08995 * 109.46998 * 293.68259 * 3 2 1 35 35 H 1.08995 * 109.47134 * 53.68922 * 3 2 1 36 36 H 1.09000 * 109.46947 * 209.99862 * 5 4 2 37 37 H 1.08998 * 109.46799 * 329.99836 * 5 4 2 38 38 H 0.96994 * 120.00041 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.47587 * 303.21590 * 16 14 4 40 40 H 1.09003 * 109.47168 * 63.21802 * 16 14 4 41 41 H 1.08000 * 120.04920 * 358.42433 * 21 20 19 42 42 H 1.07999 * 119.88820 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.91091 * 180.29973 * 23 22 21 44 44 H 1.07995 * 120.07704 * 179.97438 * 24 23 22 45 45 H 0.97005 * 120.39875 * 10.99843 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7367 -0.1419 2.5251 6 6 0.4369 -0.7072 3.0369 7 1 -0.1232 -1.4057 2.4329 8 6 -0.0367 -0.3335 4.2767 9 7 0.6456 0.5167 5.0124 10 14 -1.6476 -1.0347 4.9114 11 1 -1.5437 -2.5135 4.9979 12 1 -1.9330 -0.4784 6.2584 13 1 -2.7468 -0.6692 3.9823 14 6 2.7266 -1.8308 1.0742 15 8 3.0479 -2.4538 2.0638 16 6 3.1191 -2.3313 -0.2920 17 6 3.8405 -3.6737 -0.1554 18 1 3.2095 -4.3700 0.3970 19 8 5.0688 -3.4839 0.5503 20 6 6.0879 -2.8953 -0.1315 21 6 7.0150 -2.1104 0.5328 22 6 8.0656 -1.5441 -0.1657 23 6 8.1936 -1.7586 -1.5258 24 6 7.2679 -2.5359 -2.1973 25 6 6.2101 -3.1019 -1.5039 26 7 5.2558 -3.8812 -2.1721 27 6 4.1240 -4.2328 -1.5267 28 8 3.3379 -4.9958 -2.0475 29 1 -0.3634 0.5971 0.8364 30 1 -0.3633 0.4258 -0.9352 31 1 -0.3633 -1.0229 0.0989 32 1 1.8933 -0.5138 -0.8899 33 1 3.1241 1.4445 0.1131 34 1 1.7719 1.9226 -0.9411 35 1 1.5874 1.9879 0.8281 36 1 2.5434 -0.4102 3.2074 37 1 1.6608 0.9436 2.4613 38 1 0.3122 0.7799 5.8844 39 1 2.2254 -2.4596 -0.9026 40 1 3.7830 -1.6088 -0.7668 41 1 6.9179 -1.9408 1.5950 42 1 8.7888 -0.9322 0.3528 43 1 9.0188 -1.3178 -2.0651 44 1 7.3695 -2.7018 -3.2596 45 1 5.4073 -4.1648 -3.0873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608813970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:49 Heat of formation + Delta-G solvation = -97.573412 kcal Electronic energy + Delta-G solvation = -29490.161208 eV Core-core repulsion = 25472.213763 eV Total energy + Delta-G solvation = -4017.947445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.77066 -40.77436 -39.98455 -38.58724 -37.50515 -36.22949 -34.96495 -33.32641 -32.43516 -31.34574 -30.31793 -29.31266 -28.03499 -26.81139 -24.75056 -24.46682 -23.78540 -22.72436 -20.60168 -20.23814 -19.52456 -19.02142 -18.58167 -18.19444 -17.66550 -17.02971 -16.90252 -16.71252 -16.24847 -16.01693 -15.87952 -15.51286 -15.24431 -14.88416 -14.85337 -14.57500 -14.42970 -14.17748 -13.95128 -13.71088 -13.37183 -13.25306 -13.08388 -12.98245 -12.85189 -12.72210 -12.54033 -12.28260 -12.23226 -12.18894 -12.08719 -11.89839 -11.67507 -11.52395 -11.26113 -10.61548 -10.57264 -9.65893 -9.42456 -8.97303 -8.17928 -6.29098 0.02510 0.30367 1.08751 1.36152 1.40084 1.46673 1.58698 1.77799 2.21727 2.26393 2.42998 2.75802 2.83656 3.12106 3.31502 3.56399 3.67510 3.81286 3.96660 4.10186 4.19186 4.26302 4.32858 4.37362 4.37735 4.40174 4.58021 4.82701 4.82993 4.85708 5.00497 5.04016 5.05862 5.14509 5.23628 5.24084 5.42157 5.47620 5.54693 5.54899 5.65256 5.69275 5.75820 5.89071 6.13247 6.30719 6.63063 6.73442 6.82045 7.32045 7.48341 8.89148 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.003535 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.403252 B = 7918.744585 C = 8192.268670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.596 5.596 5 C 0.268 3.732 6 C -0.526 4.526 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.281 1.281 12 H -0.280 1.280 13 H -0.262 1.262 14 C 0.503 3.497 15 O -0.575 6.575 16 C -0.149 4.149 17 C 0.098 3.902 18 H 0.135 0.865 19 O -0.305 6.305 20 C 0.049 3.951 21 C -0.128 4.128 22 C -0.104 4.104 23 C -0.105 4.105 24 C -0.111 4.111 25 C 0.075 3.925 26 N -0.640 5.640 27 C 0.508 3.492 28 O -0.535 6.535 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.041 0.959 36 H -0.008 1.008 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.156 0.844 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.301 -0.496 -20.998 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 C -0.212 4.212 4 N -0.328 5.328 5 C 0.146 3.854 6 C -0.565 4.565 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.207 1.207 12 H -0.205 1.205 13 H -0.186 1.186 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.189 4.189 17 C 0.038 3.962 18 H 0.153 0.847 19 O -0.220 6.220 20 C 0.002 3.998 21 C -0.148 4.148 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.020 4.020 26 N -0.288 5.288 27 C 0.294 3.706 28 O -0.411 6.411 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.010 0.990 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.173 0.827 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 13.934 -1.166 -20.251 24.610 hybrid contribution -1.108 -0.533 0.855 1.497 sum 12.827 -1.699 -19.396 23.316 Atomic orbital electron populations 1.22088 0.94730 1.01623 1.02502 1.21429 0.95174 0.94350 0.86943 1.22098 1.00899 0.95052 1.03147 1.48332 1.51907 1.23978 1.08542 1.18645 0.94359 0.93430 0.78918 1.21639 1.06546 1.26013 1.02286 0.92953 1.25746 1.00921 0.95530 0.96792 1.70034 1.40336 1.34486 1.12082 0.85620 0.80020 0.78285 0.77811 1.20709 1.20533 1.18614 1.20621 0.78361 0.80995 0.91002 1.90698 1.56569 1.56969 1.41266 1.22174 1.03784 0.96667 0.96264 1.22494 0.85772 0.98277 0.89669 0.84733 1.86466 1.19818 1.75841 1.39870 1.19083 0.91931 0.98773 0.89964 1.20778 0.95978 0.96901 1.01105 1.21355 0.96719 0.99013 0.95125 1.21414 0.99437 0.97627 0.93852 1.21044 0.92803 0.97860 1.01426 1.18175 0.94059 0.99135 0.90585 1.43444 1.16879 1.50857 1.17579 1.21053 0.81358 0.80568 0.87601 1.90794 1.47483 1.34403 1.68433 0.93667 0.89070 0.94031 0.87240 0.92708 0.88357 0.93958 0.99020 0.95351 0.92649 0.85077 0.86309 0.86083 0.82655 0.81394 0.81544 0.72880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 8.40 71.98 0.60 -4.12 16 2 C 0.12 3.76 3.15 44.99 0.14 3.91 16 3 C -0.15 -4.17 8.93 71.98 0.64 -3.53 16 4 N -0.60 -24.98 2.39 -802.13 -1.92 -26.90 16 5 C 0.27 14.29 4.69 85.63 0.40 14.69 16 6 C -0.53 -30.14 8.01 25.60 0.21 -29.93 16 7 H 0.05 2.99 7.52 -2.91 -0.02 2.96 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 10 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 14 C 0.50 21.02 7.55 87.66 0.66 21.68 16 15 O -0.58 -30.08 15.01 12.16 0.18 -29.90 16 16 C -0.15 -4.36 3.58 29.85 0.11 -4.26 16 17 C 0.10 3.05 2.75 29.87 0.08 3.13 16 18 H 0.14 4.64 8.01 -2.39 -0.02 4.62 16 19 O -0.31 -10.37 9.29 -78.49 -0.73 -11.10 16 20 C 0.05 1.29 5.84 22.58 0.13 1.43 16 21 C -0.13 -3.08 9.99 22.33 0.22 -2.85 16 22 C -0.10 -1.60 10.04 22.29 0.22 -1.37 16 23 C -0.10 -1.14 10.04 22.29 0.22 -0.91 16 24 C -0.11 -1.34 9.94 22.36 0.22 -1.12 16 25 C 0.08 1.48 6.57 38.15 0.25 1.73 16 26 N -0.64 -12.34 5.46 -302.89 -1.65 -14.00 16 27 C 0.51 13.52 7.19 87.65 0.63 14.15 16 28 O -0.53 -16.85 17.95 -3.09 -0.06 -16.90 16 29 H 0.04 1.71 7.32 -2.39 -0.02 1.69 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.39 8.06 -2.39 -0.02 1.37 16 32 H 0.11 2.52 5.77 -2.39 -0.01 2.50 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.38 6.85 -2.39 -0.02 1.36 16 36 H -0.01 -0.52 7.50 -2.39 -0.02 -0.54 16 37 H 0.03 1.54 6.37 -2.39 -0.02 1.52 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.13 3.23 7.46 -2.39 -0.02 3.21 16 40 H 0.12 2.92 7.63 -2.39 -0.02 2.90 16 41 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 44 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 45 H 0.43 5.62 8.87 -92.70 -0.82 4.80 16 Total: -1.00 -80.95 372.70 3.55 -77.39 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.20 Total: 16.29 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.21 Total: 13.59 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -3.29 Total: -97.08 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.60 Total: -57.90 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.95 3.55 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.180 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds