Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 N 1.46502 * 109.46790 * 119.99807 * 2 1 3 5 5 C 1.46500 * 119.99744 * 299.99384 * 4 2 1 6 6 C 1.50694 * 109.47517 * 270.00427 * 5 4 2 7 7 H 1.08002 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00472 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99350 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47339 * 179.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 300.00306 * 10 8 6 13 13 H 1.48504 * 109.46636 * 59.99865 * 10 8 6 14 14 C 1.34768 * 119.99918 * 120.00288 * 4 2 1 15 15 O 1.21281 * 120.00340 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00134 * 359.97438 * 14 4 2 17 17 C 1.53003 * 109.47146 * 180.02562 * 16 14 4 18 18 H 1.09002 * 109.43922 * 304.99662 * 17 16 14 19 19 O 1.42925 * 109.43911 * 64.91873 * 17 16 14 20 20 C 1.36018 * 116.99354 * 74.64470 * 19 17 16 21 21 C 1.38442 * 120.44097 * 211.99372 * 20 19 17 22 22 C 1.38297 * 119.89793 * 180.65432 * 21 20 19 23 23 C 1.38281 * 120.23831 * 0.09173 * 22 21 20 24 24 C 1.38270 * 120.19267 * 359.64770 * 23 22 21 25 25 C 1.38576 * 119.84018 * 0.02562 * 24 23 22 26 26 N 1.40157 * 120.53938 * 181.56022 * 25 24 23 27 27 C 1.34872 * 119.17899 * 168.18048 * 26 25 24 28 28 O 1.21289 * 120.07354 * 174.00977 * 27 26 25 29 29 H 1.09004 * 109.47232 * 300.00510 * 1 2 3 30 30 H 1.08997 * 109.47041 * 60.00418 * 1 2 3 31 31 H 1.08994 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46667 * 239.99702 * 2 1 3 33 33 H 1.08997 * 109.46654 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47018 * 299.99920 * 3 2 1 35 35 H 1.08990 * 109.47653 * 59.99579 * 3 2 1 36 36 H 1.09005 * 109.46643 * 150.00959 * 5 4 2 37 37 H 1.08998 * 109.47481 * 30.00793 * 5 4 2 38 38 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.47246 * 300.00231 * 16 14 4 40 40 H 1.09002 * 109.47119 * 60.00003 * 16 14 4 41 41 H 1.07996 * 120.05554 * 0.69216 * 21 20 19 42 42 H 1.08004 * 119.88430 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.90381 * 179.67636 * 23 22 21 44 44 H 1.07993 * 120.08133 * 180.02562 * 24 23 22 45 45 H 0.96988 * 120.40091 * 348.19935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1899 2.5267 6 6 2.7031 0.8020 2.9829 7 1 3.5427 1.0364 2.3454 8 6 2.5817 1.4104 4.2143 9 7 1.5590 1.1253 4.9904 10 14 3.8696 2.6394 4.7801 11 1 3.5107 3.1469 6.1287 12 1 5.1963 1.9750 4.8376 13 1 3.9251 3.7738 3.8234 14 6 2.7931 -1.7863 1.0726 15 8 3.1978 -2.3578 2.0629 16 6 3.1568 -2.3016 -0.2961 17 6 4.0361 -3.5458 -0.1556 18 1 4.9011 -3.3107 0.4646 19 8 3.2823 -4.5942 0.4573 20 6 2.3526 -5.2187 -0.3147 21 6 1.1914 -5.7169 0.2509 22 6 0.2600 -6.3619 -0.5422 23 6 0.4851 -6.5128 -1.8982 24 6 1.6401 -6.0131 -2.4711 25 6 2.5741 -5.3599 -1.6828 26 7 3.7343 -4.8193 -2.2536 27 6 4.5025 -3.9884 -1.5197 28 8 5.5642 -3.5974 -1.9566 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8898 36 1 1.6239 -1.0224 3.2292 37 1 0.6904 0.2976 2.4844 38 1 1.4737 1.5530 5.8569 39 1 2.2483 -2.5586 -0.8408 40 1 3.7016 -1.5309 -0.8414 41 1 1.0128 -5.6015 1.3098 42 1 -0.6461 -6.7500 -0.1008 43 1 -0.2435 -7.0220 -2.5116 44 1 1.8139 -6.1317 -3.5304 45 1 3.9815 -5.0397 -3.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608813971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = -98.061678 kcal Electronic energy + Delta-G solvation = -29515.538191 eV Core-core repulsion = 25497.569573 eV Total energy + Delta-G solvation = -4017.968618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.77912 -40.78324 -39.98944 -38.58954 -37.51738 -36.23362 -34.96845 -33.32800 -32.43592 -31.34667 -30.32190 -29.33179 -28.00979 -26.82354 -24.75586 -24.46891 -23.78416 -22.72504 -20.60474 -20.24141 -19.51167 -19.02667 -18.58425 -18.22109 -17.66577 -17.03647 -16.92342 -16.69622 -16.24811 -16.02435 -15.86583 -15.52642 -15.24107 -14.87266 -14.85391 -14.59669 -14.43536 -14.16895 -13.95351 -13.71239 -13.34605 -13.29183 -13.07077 -12.98524 -12.84956 -12.72598 -12.54837 -12.28211 -12.24273 -12.18851 -12.08507 -11.89711 -11.65929 -11.52792 -11.25956 -10.62033 -10.58565 -9.65952 -9.42929 -8.97853 -8.18302 -6.29750 0.02356 0.30069 1.08783 1.36470 1.40345 1.46953 1.58831 1.77795 2.21014 2.26170 2.42834 2.76491 2.83316 3.11760 3.30943 3.56416 3.67931 3.80149 3.97263 4.10202 4.19812 4.27015 4.32181 4.37813 4.38087 4.39861 4.57946 4.82696 4.83078 4.86123 5.00040 5.03688 5.05963 5.12319 5.23783 5.24576 5.43323 5.47580 5.54795 5.56424 5.64807 5.69408 5.75706 5.88629 6.12558 6.30398 6.63022 6.72990 6.81330 7.31385 7.47700 8.88835 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003551 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.097400 B = 7882.487611 C = 8225.653853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 C -0.152 4.152 4 N -0.595 5.595 5 C 0.267 3.733 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.281 1.281 12 H -0.281 1.281 13 H -0.261 1.261 14 C 0.504 3.496 15 O -0.578 6.578 16 C -0.148 4.148 17 C 0.099 3.901 18 H 0.135 0.865 19 O -0.307 6.307 20 C 0.048 3.952 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.111 4.111 25 C 0.075 3.925 26 N -0.640 5.640 27 C 0.507 3.493 28 O -0.535 6.535 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.045 0.955 36 H -0.007 1.007 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -12.855 -21.630 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 C -0.210 4.210 4 N -0.326 5.326 5 C 0.146 3.854 6 C -0.566 4.566 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.783 3.217 11 H -0.206 1.206 12 H -0.206 1.206 13 H -0.186 1.186 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.189 4.189 17 C 0.039 3.961 18 H 0.152 0.848 19 O -0.221 6.221 20 C 0.002 3.998 21 C -0.147 4.147 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.020 4.020 26 N -0.287 5.287 27 C 0.294 3.706 28 O -0.412 6.412 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.011 0.989 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.174 0.826 43 H 0.186 0.814 44 H 0.184 0.816 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.771 -12.830 -20.830 24.925 hybrid contribution 0.973 0.793 0.848 1.514 sum -3.799 -12.037 -19.982 23.635 Atomic orbital electron populations 1.22109 0.94013 1.02235 1.02945 1.21422 0.95476 0.94078 0.86932 1.22085 1.00656 0.95715 1.02580 1.48313 1.49209 1.26621 1.08482 1.18636 0.95228 0.92597 0.78937 1.21636 1.09030 1.23632 1.02302 0.92830 1.25757 0.97707 0.99028 0.96504 1.70042 1.31235 1.44556 1.11069 0.85606 0.78995 0.79283 0.77773 1.20579 1.20647 1.18563 1.20599 0.78736 0.80505 0.91014 1.90690 1.54716 1.59088 1.41296 1.22167 1.02505 0.98030 0.96177 1.22490 0.95756 0.86693 0.91207 0.84759 1.86454 1.48919 1.47696 1.39041 1.19087 0.91798 0.99923 0.88997 1.20783 0.91080 1.01380 1.01427 1.21361 0.98957 0.97667 0.94201 1.21417 0.97104 0.99037 0.94718 1.21045 0.92645 0.98670 1.00777 1.18188 0.89747 1.02522 0.91498 1.43427 1.22930 1.44783 1.17598 1.21047 0.83881 0.78485 0.87205 1.90791 1.21991 1.56048 1.72358 0.94080 0.88427 0.92507 0.87348 0.93808 0.89149 0.93558 0.98909 0.95502 0.92636 0.86263 0.85171 0.86010 0.82615 0.81391 0.81578 0.72889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.17 71.98 0.66 -3.51 16 2 C 0.12 3.76 3.17 44.99 0.14 3.90 16 3 C -0.15 -4.75 8.47 71.98 0.61 -4.14 16 4 N -0.59 -24.97 2.39 -802.15 -1.91 -26.88 16 5 C 0.27 14.28 4.59 85.63 0.39 14.67 16 6 C -0.53 -30.06 7.83 25.60 0.20 -29.86 16 7 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 10 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 C 0.50 21.12 7.55 87.66 0.66 21.78 16 15 O -0.58 -30.23 14.99 10.84 0.16 -30.07 16 16 C -0.15 -4.39 3.53 29.85 0.11 -4.28 16 17 C 0.10 3.08 2.74 29.88 0.08 3.16 16 18 H 0.13 4.68 7.95 -2.39 -0.02 4.66 16 19 O -0.31 -10.34 9.38 -79.89 -0.75 -11.09 16 20 C 0.05 1.26 5.84 22.58 0.13 1.39 16 21 C -0.13 -2.98 9.99 22.33 0.22 -2.76 16 22 C -0.10 -1.54 10.04 22.29 0.22 -1.32 16 23 C -0.10 -1.09 10.04 22.29 0.22 -0.87 16 24 C -0.11 -1.32 9.94 22.36 0.22 -1.09 16 25 C 0.08 1.47 6.57 38.15 0.25 1.72 16 26 N -0.64 -12.35 5.46 -302.98 -1.65 -14.00 16 27 C 0.51 13.60 7.18 87.68 0.63 14.23 16 28 O -0.54 -17.04 17.95 -3.06 -0.05 -17.10 16 29 H 0.04 1.34 6.66 -2.38 -0.02 1.32 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.11 2.51 5.77 -2.39 -0.01 2.50 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 35 H 0.05 1.78 6.92 -2.39 -0.02 1.76 16 36 H -0.01 -0.45 7.42 -2.38 -0.02 -0.47 16 37 H 0.03 1.46 6.43 -2.39 -0.02 1.45 16 38 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 39 H 0.12 2.92 7.37 -2.39 -0.02 2.90 16 40 H 0.13 3.29 7.79 -2.39 -0.02 3.27 16 41 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 45 H 0.43 5.64 8.87 -92.72 -0.82 4.82 16 Total: -1.00 -80.76 372.34 3.52 -77.24 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.20 Total: 16.54 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 5.22 Total: 13.98 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -3.28 Total: -97.00 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.64 Total: -58.26 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -80.76 3.52 -77.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.822 kcal (2) G-P(sol) polarization free energy of solvation -80.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds