Wall clock time and date at job start Tue Mar 31 2020 18:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 114.00494 * 2 1 4 4 C 1.52999 * 109.47393 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47019 * 304.99874 * 4 3 2 6 6 O 1.42898 * 109.47137 * 64.99580 * 4 3 2 7 7 C 1.52998 * 109.46843 * 184.99908 * 4 3 2 8 8 N 1.46502 * 109.46991 * 176.50754 * 7 4 3 9 9 C 1.34773 * 120.00338 * 185.30482 * 8 7 4 10 10 O 1.21671 * 119.99840 * 4.82553 * 9 8 7 11 11 C 1.46892 * 120.00353 * 184.82830 * 9 8 7 12 12 C 1.36122 * 125.43826 * 173.92133 * 11 9 8 13 13 C 1.41695 * 107.74868 * 179.88144 * 12 11 9 14 14 C 1.40022 * 133.34979 * 180.15319 * 13 12 11 15 15 C 1.36585 * 119.82993 * 180.26705 * 14 13 12 16 16 C 1.38855 * 120.59720 * 359.97438 * 15 14 13 17 17 C 1.37843 * 120.63624 * 359.97438 * 16 15 14 18 18 C 1.39087 * 119.81394 * 0.02562 * 17 16 15 19 19 N 1.37835 * 133.16390 * 180.02562 * 18 17 16 20 20 C 1.36897 * 125.61831 * 359.97438 * 19 18 17 21 21 H 1.07998 * 119.99414 * 132.99029 * 20 19 18 22 22 C 1.39006 * 120.00056 * 312.98693 * 20 19 18 23 23 N 1.31355 * 119.99974 * 3.62451 * 22 20 19 24 24 Si 1.86800 * 120.00149 * 183.61990 * 22 20 19 25 25 H 1.48500 * 109.46901 * 95.00255 * 24 22 20 26 26 H 1.48499 * 109.47369 * 215.00650 * 24 22 20 27 27 H 1.48505 * 109.47103 * 335.00790 * 24 22 20 28 28 H 1.08994 * 109.47710 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47285 * 300.00717 * 1 2 3 30 30 H 1.09008 * 109.47176 * 60.00023 * 1 2 3 31 31 H 1.09002 * 109.46462 * 299.99903 * 3 2 1 32 32 H 1.09002 * 109.47115 * 59.99367 * 3 2 1 33 33 H 1.08994 * 109.47005 * 59.99724 * 5 4 3 34 34 H 1.09001 * 109.47117 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.47019 * 300.00239 * 5 4 3 36 36 H 0.96702 * 113.99719 * 60.00248 * 6 4 3 37 37 H 1.08999 * 109.47146 * 296.50369 * 7 4 3 38 38 H 1.08999 * 109.47340 * 56.50893 * 7 4 3 39 39 H 0.97005 * 119.99618 * 5.31092 * 8 7 4 40 40 H 1.08001 * 126.12373 * 359.97438 * 12 11 9 41 41 H 1.08002 * 120.08703 * 0.24690 * 14 13 12 42 42 H 1.07999 * 119.69898 * 180.02562 * 15 14 13 43 43 H 1.07997 * 119.67966 * 180.02562 * 16 15 14 44 44 H 1.07997 * 120.09126 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99917 * 185.00405 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9780 0.3197 1.1827 6 8 3.9658 0.5790 -1.2201 7 6 4.1573 2.5768 0.1263 8 7 5.6147 2.4549 0.2109 9 6 6.3706 3.5480 0.4348 10 8 5.8394 4.6204 0.6540 11 6 7.8358 3.4447 0.4141 12 6 8.7021 4.4904 0.5085 13 6 10.0179 3.9677 0.4514 14 6 11.2883 4.5543 0.5026 15 6 12.4029 3.7698 0.4153 16 6 12.2890 2.3929 0.2765 17 6 11.0494 1.7923 0.2247 18 6 9.8998 2.5704 0.3116 19 7 8.5546 2.2707 0.2914 20 6 8.0189 1.0168 0.1687 21 1 7.2259 0.7014 0.8305 22 6 8.4957 0.1498 -0.8077 23 7 9.5075 0.5067 -1.5655 24 14 7.6976 -1.5227 -1.0420 25 1 6.6776 -1.4381 -2.1180 26 1 8.7338 -2.5173 -1.4192 27 1 7.0466 -1.9424 0.2251 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 3.5349 -0.6721 1.0931 34 1 5.0646 0.2340 1.1834 35 1 3.6497 0.7816 2.1138 36 1 3.7192 1.0744 -2.0131 37 1 3.8926 3.1731 -0.7469 38 1 3.7806 3.0631 1.0262 39 1 6.0357 1.5873 0.1055 40 1 8.4345 5.5317 0.6104 41 1 11.3865 5.6245 0.6105 42 1 13.3817 4.2245 0.4554 43 1 13.1803 1.7867 0.2092 44 1 10.9711 0.7207 0.1161 45 1 9.7937 -0.0665 -2.2938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610358845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:11 Heat of formation + Delta-G solvation = -70.286966 kcal Electronic energy + Delta-G solvation = -29323.177995 eV Core-core repulsion = 25306.413779 eV Total energy + Delta-G solvation = -4016.764216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.49255 -39.36636 -38.21800 -36.81786 -35.88139 -34.07789 -33.46476 -31.57275 -30.65754 -29.04147 -28.18665 -27.55655 -26.72959 -25.18975 -24.96239 -22.54440 -20.95831 -20.49614 -20.01437 -19.28256 -18.21411 -17.21369 -16.59608 -16.32148 -16.15172 -15.62845 -15.14109 -15.07542 -14.81633 -14.76131 -14.40075 -14.13572 -13.76107 -13.31297 -13.28074 -12.98325 -12.84488 -12.57669 -12.51304 -12.28318 -12.04414 -11.88061 -11.79087 -11.65632 -11.57203 -11.49700 -11.06494 -10.72986 -10.67403 -10.56408 -10.16893 -10.04510 -9.86956 -9.72318 -9.41914 -9.23254 -8.61357 -8.52129 -7.16286 -6.82338 -6.54989 -4.71026 1.87533 2.81425 2.98669 3.05226 3.08133 3.16877 3.28771 3.76022 3.97559 4.25810 4.30950 4.57749 4.62679 4.74480 4.74885 4.83115 5.08836 5.09803 5.11442 5.22009 5.30848 5.42938 5.61327 5.73091 5.83825 5.91987 5.98115 6.00633 6.02691 6.20195 6.34399 6.46247 6.64420 6.73676 6.85439 6.88829 6.95438 7.01354 7.15320 7.18010 7.50221 7.62135 7.70372 7.70873 7.95952 7.97612 8.23474 8.35955 8.68206 8.95342 9.28149 10.14575 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.004038 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.223732 B = 6932.271293 C = 8444.532398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.124 3.876 5 C -0.139 4.139 6 O -0.540 6.540 7 C 0.096 3.904 8 N -0.721 5.721 9 C 0.596 3.404 10 O -0.562 6.562 11 C -0.020 4.020 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.090 4.090 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.045 4.045 18 C 0.108 3.892 19 N -0.263 5.263 20 C -0.373 4.373 21 H 0.105 0.895 22 C 0.063 3.937 23 N -0.820 5.820 24 Si 0.924 3.076 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.261 1.261 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.374 0.626 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.422 0.578 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 -1.786 1.302 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C -0.038 4.038 4 C 0.083 3.917 5 C -0.196 4.196 6 O -0.346 6.346 7 C -0.030 4.030 8 N -0.382 5.382 9 C 0.386 3.614 10 O -0.441 6.441 11 C -0.134 4.134 12 C -0.192 4.192 13 C -0.141 4.141 14 C -0.109 4.109 15 C -0.178 4.178 16 C -0.173 4.173 17 C -0.065 4.065 18 C -0.006 4.006 19 N 0.072 4.928 20 C -0.500 4.500 21 H 0.122 0.878 22 C -0.151 4.151 23 N -0.448 5.448 24 Si 0.747 3.253 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.185 1.185 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.222 0.778 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.269 0.731 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.603 -2.146 1.672 10.946 hybrid contribution -0.645 -0.440 -0.875 1.173 sum -11.248 -2.585 0.796 11.569 Atomic orbital electron populations 1.22758 0.81357 1.02743 0.99819 1.87965 1.19197 1.26895 1.95322 1.23152 0.94124 0.85427 1.01061 1.21435 0.90303 0.92476 0.87485 1.21699 1.02716 1.00483 0.94744 1.86679 1.80920 1.52254 1.14709 1.21782 0.82965 0.95668 1.02555 1.46595 1.05350 1.13094 1.73204 1.17293 0.85322 0.83390 0.75441 1.90707 1.73691 1.28445 1.51304 1.20066 0.90481 0.87226 1.15658 1.20379 0.90415 0.97043 1.11336 1.18049 0.93044 0.93228 1.09733 1.20034 0.90940 0.98010 1.01891 1.20272 0.96985 0.93973 1.06564 1.20587 0.96061 0.94458 1.06169 1.20187 0.89341 0.99568 0.97371 1.18313 0.85055 0.92922 1.04336 1.39946 1.02570 1.03961 1.46276 1.19498 1.22341 0.88697 1.19474 0.87765 1.25697 0.94568 1.00419 0.94371 1.69957 1.21053 1.38268 1.15544 0.85926 0.79195 0.79771 0.80400 1.18553 1.20174 1.18469 0.89613 0.94169 0.94200 0.92766 0.92135 0.90723 0.91287 0.91183 0.77837 0.91778 0.90621 0.73087 0.85070 0.87864 0.88027 0.87769 0.86128 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.49 9.79 -40.08 -0.39 -4.89 16 3 C 0.04 0.43 5.06 37.16 0.19 0.62 16 4 C 0.12 1.68 0.85 -90.62 -0.08 1.60 16 5 C -0.14 -1.98 8.44 37.16 0.31 -1.66 16 6 O -0.54 -8.06 12.78 -40.08 -0.51 -8.57 16 7 C 0.10 1.44 4.83 -4.04 -0.02 1.42 16 8 N -0.72 -13.92 5.04 -61.55 -0.31 -14.23 16 9 C 0.60 13.42 7.77 -12.76 -0.10 13.32 16 10 O -0.56 -13.25 16.82 5.21 0.09 -13.16 16 11 C -0.02 -0.48 6.77 -82.25 -0.56 -1.03 16 12 C -0.16 -3.87 10.55 -39.02 -0.41 -4.28 16 13 C -0.14 -3.23 6.16 -106.89 -0.66 -3.89 16 14 C -0.09 -1.87 10.06 -39.51 -0.40 -2.27 16 15 C -0.16 -3.11 9.97 -39.95 -0.40 -3.50 16 16 C -0.15 -3.13 10.02 -39.50 -0.40 -3.53 16 17 C -0.05 -1.06 8.47 -39.41 -0.33 -1.39 16 18 C 0.11 2.73 6.04 -83.84 -0.51 2.22 16 19 N -0.26 -6.61 2.83 -56.08 -0.16 -6.77 16 20 C -0.37 -8.97 7.64 -15.01 -0.11 -9.09 16 21 H 0.11 2.38 5.94 -52.49 -0.31 2.07 16 22 C 0.06 1.49 5.13 -17.47 -0.09 1.40 16 23 N -0.82 -20.32 10.12 55.50 0.56 -19.76 16 24 Si 0.92 18.41 29.56 -169.99 -5.02 13.39 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.06 7.56 -51.93 -0.39 0.67 16 34 H 0.07 1.11 6.25 -51.93 -0.32 0.79 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.37 4.26 9.05 45.56 0.41 4.67 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.42 8.50 3.10 -40.82 -0.13 8.38 16 40 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 2.91 6.57 -52.49 -0.34 2.56 16 45 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -30.22 371.12 -7.89 -38.11 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -5.29 Total: 19.00 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.44 Total: -8.71 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.09 Total: -40.76 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.82 Total: -26.62 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.22 -7.89 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610358845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.178 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds