Wall clock time and date at job start Tue Mar 31 2020 18:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47222 * 60.00344 * 4 3 2 6 6 O 1.42902 * 109.46967 * 300.00087 * 4 3 2 7 7 C 1.53005 * 109.46974 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.46882 * 178.68104 * 7 4 3 9 9 C 1.34782 * 119.99820 * 174.74234 * 8 7 4 10 10 O 1.21670 * 119.99920 * 5.03810 * 9 8 7 11 11 C 1.46889 * 119.99994 * 185.03734 * 9 8 7 12 12 C 1.36122 * 125.43552 * 186.88473 * 11 9 8 13 13 C 1.41695 * 107.74808 * 180.02562 * 12 11 9 14 14 C 1.40017 * 133.34988 * 179.97438 * 13 12 11 15 15 C 1.36582 * 119.83422 * 180.02562 * 14 13 12 16 16 C 1.38858 * 120.59543 * 359.97438 * 15 14 13 17 17 C 1.37838 * 120.63287 * 0.28603 * 16 15 14 18 18 C 1.39086 * 119.81629 * 359.46958 * 17 16 15 19 19 N 1.37842 * 133.16707 * 180.19083 * 18 17 16 20 20 C 1.36892 * 125.62032 * 0.26628 * 19 18 17 21 21 H 1.07997 * 120.00562 * 221.93095 * 20 19 18 22 22 C 1.39014 * 119.99980 * 41.92572 * 20 19 18 23 23 N 1.31356 * 120.00074 * 9.56742 * 22 20 19 24 24 Si 1.86798 * 120.00246 * 189.56176 * 22 20 19 25 25 H 1.48505 * 109.46571 * 95.00242 * 24 22 20 26 26 H 1.48493 * 109.47333 * 215.00165 * 24 22 20 27 27 H 1.48496 * 109.46996 * 335.00729 * 24 22 20 28 28 H 1.08998 * 109.47051 * 300.00128 * 1 2 3 29 29 H 1.08997 * 109.46853 * 60.00015 * 1 2 3 30 30 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46577 * 60.00224 * 3 2 1 32 32 H 1.08999 * 109.47050 * 300.00226 * 3 2 1 33 33 H 1.09007 * 109.47116 * 185.07185 * 5 4 3 34 34 H 1.09007 * 109.47092 * 305.06579 * 5 4 3 35 35 H 1.08999 * 109.47286 * 65.06504 * 5 4 3 36 36 H 0.96701 * 113.99976 * 300.00163 * 6 4 3 37 37 H 1.08997 * 109.47323 * 58.67822 * 7 4 3 38 38 H 1.08998 * 109.46941 * 298.68003 * 7 4 3 39 39 H 0.96996 * 119.99943 * 354.74017 * 8 7 4 40 40 H 1.07996 * 126.12399 * 0.06237 * 12 11 9 41 41 H 1.08000 * 120.08620 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.70121 * 180.02562 * 15 14 13 43 43 H 1.07999 * 119.67687 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.09215 * 179.69468 * 17 16 15 45 45 H 0.96993 * 120.00343 * 184.97547 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4257 -1.2502 6 8 3.9576 0.4752 1.1658 7 6 4.1578 2.5824 0.0000 8 7 5.6179 2.4668 0.0312 9 6 6.3836 3.5714 -0.0696 10 8 5.8644 4.6714 -0.0942 11 6 7.8451 3.4471 -0.1498 12 6 8.7280 4.4827 -0.1208 13 6 10.0331 3.9406 -0.2231 14 6 11.3116 4.5110 -0.2466 15 6 12.4116 3.7089 -0.3574 16 6 12.2746 2.3300 -0.4467 17 6 11.0263 1.7457 -0.4311 18 6 9.8916 2.5415 -0.3138 19 7 8.5431 2.2600 -0.2664 20 6 7.9869 1.0106 -0.3266 21 1 7.1016 0.8416 -0.9216 22 6 8.5616 -0.0408 0.3782 23 7 9.5190 0.1958 1.2459 24 14 7.9725 -1.7901 0.0914 25 1 8.8486 -2.4494 -0.9101 26 1 8.0247 -2.5457 1.3687 27 1 6.5758 -1.7656 -0.4125 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0631 0.2608 -1.2064 34 1 3.4734 -0.5350 -1.2968 35 1 3.7442 1.0103 -2.1376 36 1 3.7053 0.8999 1.9972 37 1 3.8179 3.1311 0.8783 38 1 3.8547 3.1154 -0.9011 39 1 6.0335 1.5953 0.1244 40 1 8.4784 5.5299 -0.0345 41 1 11.4278 5.5825 -0.1781 42 1 13.3967 4.1511 -0.3749 43 1 13.1545 1.7097 -0.5335 44 1 10.9297 0.6726 -0.5060 45 1 9.9695 -0.5428 1.6844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610358846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:16 Heat of formation + Delta-G solvation = -71.558277 kcal Electronic energy + Delta-G solvation = -29295.886547 eV Core-core repulsion = 25279.067203 eV Total energy + Delta-G solvation = -4016.819344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.50609 -39.36023 -38.22108 -36.80675 -35.90069 -34.05995 -33.47666 -31.61533 -30.66850 -29.06809 -28.20454 -27.55921 -26.69393 -25.18511 -24.96221 -22.55353 -20.99357 -20.51071 -20.03045 -19.26346 -18.22253 -17.22137 -16.60267 -16.30257 -16.16418 -15.62691 -15.12088 -15.09638 -14.82963 -14.77405 -14.43496 -14.10943 -13.76310 -13.34302 -13.26087 -12.98846 -12.92769 -12.56911 -12.48326 -12.28277 -12.03576 -11.91405 -11.76504 -11.70927 -11.58615 -11.35467 -11.16849 -10.74674 -10.69147 -10.54657 -10.23685 -10.03183 -9.86476 -9.77682 -9.42368 -9.22616 -8.66050 -8.52259 -7.21761 -6.85075 -6.53519 -4.67092 1.84647 2.77857 2.98080 3.03487 3.05657 3.14835 3.28148 3.74601 3.97776 4.24412 4.32548 4.53927 4.66608 4.74064 4.76694 4.83791 5.09373 5.09608 5.10144 5.22067 5.32313 5.43230 5.60680 5.74895 5.82396 5.90966 5.97537 5.98618 6.02841 6.18333 6.35229 6.44901 6.59249 6.70747 6.85871 6.88738 6.93206 7.00988 7.12221 7.14366 7.47187 7.59228 7.65911 7.71436 7.94248 7.95751 8.23471 8.32907 8.69139 8.95053 9.26699 10.13826 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.004047 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.740334 B = 6917.325972 C = 8479.192095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.039 3.961 4 C 0.126 3.874 5 C -0.141 4.141 6 O -0.539 6.539 7 C 0.096 3.904 8 N -0.721 5.721 9 C 0.596 3.404 10 O -0.561 6.561 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.134 4.134 14 C -0.086 4.086 15 C -0.160 4.160 16 C -0.148 4.148 17 C -0.053 4.053 18 C 0.104 3.896 19 N -0.258 5.258 20 C -0.373 4.373 21 H 0.109 0.891 22 C 0.061 3.939 23 N -0.815 5.815 24 Si 0.923 3.077 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.255 1.255 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.374 0.626 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.423 0.577 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -1.487 -1.912 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.038 4.038 4 C 0.084 3.916 5 C -0.198 4.198 6 O -0.344 6.344 7 C -0.029 4.029 8 N -0.382 5.382 9 C 0.386 3.614 10 O -0.441 6.441 11 C -0.136 4.136 12 C -0.193 4.193 13 C -0.139 4.139 14 C -0.105 4.105 15 C -0.180 4.180 16 C -0.168 4.168 17 C -0.072 4.072 18 C -0.011 4.011 19 N 0.079 4.921 20 C -0.501 4.501 21 H 0.126 0.874 22 C -0.153 4.153 23 N -0.444 5.444 24 Si 0.746 3.254 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.178 1.178 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.221 0.779 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.270 0.730 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.449 -1.787 -2.180 10.823 hybrid contribution -0.500 -0.600 0.593 0.980 sum -10.949 -2.387 -1.587 11.318 Atomic orbital electron populations 1.22762 0.81365 1.02743 0.99814 1.87973 1.19171 1.26845 1.95318 1.23146 0.94184 0.85445 1.01057 1.21435 0.90288 0.91306 0.88564 1.21745 1.03173 1.00963 0.93954 1.86674 1.80890 1.51821 1.15048 1.21784 0.82833 0.95698 1.02630 1.46525 1.04985 1.12221 1.74508 1.17286 0.85205 0.83706 0.75200 1.90708 1.74176 1.26551 1.52675 1.20033 0.90799 0.87429 1.15365 1.20361 0.90305 0.97148 1.11466 1.18022 0.93083 0.92923 1.09822 1.20050 0.90964 0.98055 1.01466 1.20269 0.97126 0.93805 1.06752 1.20577 0.95876 0.94527 1.05853 1.20104 0.89687 0.98736 0.98710 1.18203 0.85002 0.92676 1.05186 1.39962 1.02958 1.03779 1.45431 1.19609 1.15289 0.83783 1.31380 0.87406 1.25638 0.95818 1.01238 0.92642 1.69959 1.20411 1.34156 1.19831 0.85944 0.80389 0.80325 0.78734 1.19522 1.19971 1.17807 0.94195 0.94179 0.89610 0.92798 0.92148 0.90938 0.90889 0.91254 0.77882 0.91771 0.90731 0.73001 0.85067 0.87798 0.87959 0.87727 0.86720 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.52 9.83 -44.85 -0.44 -4.96 16 3 C 0.04 0.43 5.03 37.16 0.19 0.62 16 4 C 0.13 1.70 0.83 -90.62 -0.08 1.62 16 5 C -0.14 -2.02 8.54 37.15 0.32 -1.70 16 6 O -0.54 -8.05 12.49 -44.85 -0.56 -8.61 16 7 C 0.10 1.44 4.78 -4.04 -0.02 1.42 16 8 N -0.72 -13.92 4.90 -61.55 -0.30 -14.22 16 9 C 0.60 13.42 7.76 -12.76 -0.10 13.32 16 10 O -0.56 -13.25 16.86 5.22 0.09 -13.16 16 11 C -0.02 -0.52 6.76 -82.25 -0.56 -1.08 16 12 C -0.16 -3.89 10.55 -39.02 -0.41 -4.30 16 13 C -0.13 -3.17 6.16 -106.90 -0.66 -3.83 16 14 C -0.09 -1.79 10.06 -39.51 -0.40 -2.18 16 15 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16 16 C -0.15 -3.01 10.02 -39.50 -0.40 -3.41 16 17 C -0.05 -1.23 8.51 -39.41 -0.34 -1.57 16 18 C 0.10 2.62 6.04 -83.83 -0.51 2.11 16 19 N -0.26 -6.46 2.82 -56.08 -0.16 -6.61 16 20 C -0.37 -8.94 7.70 -15.00 -0.12 -9.06 16 21 H 0.11 2.44 5.50 -52.49 -0.29 2.15 16 22 C 0.06 1.43 4.73 -17.47 -0.08 1.35 16 23 N -0.82 -20.24 10.58 55.50 0.59 -19.65 16 24 Si 0.92 18.20 29.57 -169.99 -5.03 13.17 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.19 6.30 -51.93 -0.33 0.87 16 34 H 0.07 1.04 7.53 -51.92 -0.39 0.65 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.37 4.28 9.04 45.56 0.41 4.69 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.42 8.60 3.55 -40.82 -0.14 8.46 16 40 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.11 2.72 6.53 -52.48 -0.34 2.38 16 45 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -30.17 370.96 -7.95 -38.12 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -5.29 Total: 19.18 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.44 Total: -8.84 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.13 Total: -40.48 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.91 Total: -26.74 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.17 -7.95 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610358846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.440 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds