Wall clock time and date at job start Tue Mar 31 2020 18:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47222 * 60.00344 * 4 3 2 6 6 O 1.42902 * 109.46967 * 300.00087 * 4 3 2 7 7 C 1.53005 * 109.46974 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.46882 * 178.68104 * 7 4 3 9 9 C 1.34782 * 119.99820 * 174.74234 * 8 7 4 10 10 O 1.21670 * 119.99920 * 5.03810 * 9 8 7 11 11 C 1.46889 * 119.99994 * 185.03734 * 9 8 7 12 12 C 1.36122 * 125.43552 * 186.88473 * 11 9 8 13 13 C 1.41695 * 107.74808 * 180.02562 * 12 11 9 14 14 C 1.40017 * 133.34988 * 179.97438 * 13 12 11 15 15 C 1.36582 * 119.83422 * 180.02562 * 14 13 12 16 16 C 1.38858 * 120.59543 * 359.97438 * 15 14 13 17 17 C 1.37838 * 120.63287 * 0.28603 * 16 15 14 18 18 C 1.39086 * 119.81629 * 359.46958 * 17 16 15 19 19 N 1.37842 * 133.16707 * 180.19083 * 18 17 16 20 20 C 1.36892 * 125.62032 * 0.26628 * 19 18 17 21 21 H 1.07997 * 120.00562 * 221.93095 * 20 19 18 22 22 C 1.39014 * 119.99980 * 41.92572 * 20 19 18 23 23 N 1.31356 * 120.00074 * 9.56742 * 22 20 19 24 24 Si 1.86798 * 120.00246 * 189.56176 * 22 20 19 25 25 H 1.48505 * 109.46571 * 95.00242 * 24 22 20 26 26 H 1.48493 * 109.47333 * 215.00165 * 24 22 20 27 27 H 1.48496 * 109.46996 * 335.00729 * 24 22 20 28 28 H 1.08998 * 109.47051 * 300.00128 * 1 2 3 29 29 H 1.08997 * 109.46853 * 60.00015 * 1 2 3 30 30 H 1.09001 * 109.46906 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46577 * 60.00224 * 3 2 1 32 32 H 1.08999 * 109.47050 * 300.00226 * 3 2 1 33 33 H 1.09007 * 109.47116 * 185.07185 * 5 4 3 34 34 H 1.09007 * 109.47092 * 305.06579 * 5 4 3 35 35 H 1.08999 * 109.47286 * 65.06504 * 5 4 3 36 36 H 0.96701 * 113.99976 * 300.00163 * 6 4 3 37 37 H 1.08997 * 109.47323 * 58.67822 * 7 4 3 38 38 H 1.08998 * 109.46941 * 298.68003 * 7 4 3 39 39 H 0.96996 * 119.99943 * 354.74017 * 8 7 4 40 40 H 1.07996 * 126.12399 * 0.06237 * 12 11 9 41 41 H 1.08000 * 120.08620 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.70121 * 180.02562 * 15 14 13 43 43 H 1.07999 * 119.67687 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.09215 * 179.69468 * 17 16 15 45 45 H 0.96993 * 120.00343 * 184.97547 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4257 -1.2502 6 8 3.9576 0.4752 1.1658 7 6 4.1578 2.5824 0.0000 8 7 5.6179 2.4668 0.0312 9 6 6.3836 3.5714 -0.0696 10 8 5.8644 4.6714 -0.0942 11 6 7.8451 3.4471 -0.1498 12 6 8.7280 4.4827 -0.1208 13 6 10.0331 3.9406 -0.2231 14 6 11.3116 4.5110 -0.2466 15 6 12.4116 3.7089 -0.3574 16 6 12.2746 2.3300 -0.4467 17 6 11.0263 1.7457 -0.4311 18 6 9.8916 2.5415 -0.3138 19 7 8.5431 2.2600 -0.2664 20 6 7.9869 1.0106 -0.3266 21 1 7.1016 0.8416 -0.9216 22 6 8.5616 -0.0408 0.3782 23 7 9.5190 0.1958 1.2459 24 14 7.9725 -1.7901 0.0914 25 1 8.8486 -2.4494 -0.9101 26 1 8.0247 -2.5457 1.3687 27 1 6.5758 -1.7656 -0.4125 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0631 0.2608 -1.2064 34 1 3.4734 -0.5350 -1.2968 35 1 3.7442 1.0103 -2.1376 36 1 3.7053 0.8999 1.9972 37 1 3.8179 3.1311 0.8783 38 1 3.8547 3.1154 -0.9011 39 1 6.0335 1.5953 0.1244 40 1 8.4784 5.5299 -0.0345 41 1 11.4278 5.5825 -0.1781 42 1 13.3967 4.1511 -0.3749 43 1 13.1545 1.7097 -0.5335 44 1 10.9297 0.6726 -0.5060 45 1 9.9695 -0.5428 1.6844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610358846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:15 Heat of formation + Delta-G solvation = -91.483355 kcal Electronic energy + Delta-G solvation = -29296.750564 eV Core-core repulsion = 25279.067203 eV Total energy + Delta-G solvation = -4017.683361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23339 -40.65271 -39.58110 -37.82115 -37.58657 -35.64386 -35.11046 -32.84141 -32.41028 -30.73326 -29.85845 -28.43482 -27.87307 -26.78276 -26.16779 -24.10618 -22.72058 -21.73354 -21.63354 -20.94123 -19.92727 -18.37401 -18.19442 -17.41211 -17.16986 -17.05072 -16.57510 -16.49657 -16.38900 -16.25377 -15.75173 -15.49368 -15.18844 -14.84798 -14.73210 -14.62036 -14.33966 -14.16759 -13.73094 -13.57541 -13.48746 -13.30822 -13.06643 -13.02506 -12.86589 -12.72613 -12.47525 -12.31482 -12.16308 -11.92498 -11.71029 -11.45622 -11.29640 -10.99681 -10.96116 -10.63934 -10.39986 -10.09005 -8.97932 -8.61862 -8.28487 -6.50818 0.11763 1.11581 1.36173 1.38105 1.43292 1.50016 2.07413 2.11545 2.48474 2.75564 2.80157 2.98224 3.30264 3.37472 3.67643 3.74048 3.84225 4.05831 4.24003 4.31539 4.37467 4.44251 4.51502 4.54303 4.55958 4.57109 4.71214 4.74165 4.82368 4.85680 4.88830 4.91565 5.02142 5.05253 5.21314 5.25639 5.37225 5.44026 5.46575 5.73918 5.91480 5.97603 6.18974 6.21648 6.26454 6.53890 6.58381 6.76451 6.92529 7.24257 7.47681 8.37285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.004047 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.740334 B = 6917.325972 C = 8479.192095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.045 3.955 4 C 0.130 3.870 5 C -0.142 4.142 6 O -0.562 6.562 7 C 0.092 3.908 8 N -0.714 5.714 9 C 0.592 3.408 10 O -0.580 6.580 11 C -0.048 4.048 12 C -0.176 4.176 13 C -0.156 4.156 14 C -0.091 4.091 15 C -0.153 4.153 16 C -0.137 4.137 17 C -0.082 4.082 18 C 0.074 3.926 19 N -0.272 5.272 20 C -0.387 4.387 21 H 0.113 0.887 22 C 0.029 3.971 23 N -0.847 5.847 24 Si 0.982 3.018 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.250 1.250 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.387 0.613 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.419 0.581 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -1.425 -2.148 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.033 4.033 4 C 0.089 3.911 5 C -0.199 4.199 6 O -0.369 6.369 7 C -0.032 4.032 8 N -0.372 5.372 9 C 0.381 3.619 10 O -0.462 6.462 11 C -0.163 4.163 12 C -0.204 4.204 13 C -0.160 4.160 14 C -0.110 4.110 15 C -0.172 4.172 16 C -0.157 4.157 17 C -0.102 4.102 18 C -0.041 4.041 19 N 0.064 4.936 20 C -0.513 4.513 21 H 0.130 0.870 22 C -0.182 4.182 23 N -0.476 5.476 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.174 1.174 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.236 0.764 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.265 0.735 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.119 0.881 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.705 -1.726 -2.416 11.109 hybrid contribution -0.366 -0.578 0.663 0.952 sum -11.070 -2.304 -1.753 11.443 Atomic orbital electron populations 1.22946 0.79497 1.03724 1.00984 1.87923 1.21232 1.27408 1.95585 1.23060 0.91813 0.85565 1.02814 1.21405 0.92252 0.89720 0.87750 1.21759 1.01278 1.01515 0.95369 1.86637 1.81490 1.52614 1.16150 1.22052 0.80203 0.97290 1.03606 1.46497 1.06806 1.10980 1.72963 1.17207 0.84942 0.84212 0.75534 1.90674 1.74320 1.27102 1.54064 1.20477 0.92066 0.87711 1.16050 1.20611 0.90630 0.97636 1.11547 1.18418 0.94363 0.92683 1.10547 1.20469 0.90029 0.99918 1.00589 1.20742 0.98725 0.93182 1.04566 1.21026 0.95713 0.95713 1.03245 1.20189 0.90665 0.98188 1.01202 1.18690 0.85448 0.93828 1.06095 1.40149 1.03292 1.04110 1.46055 1.19891 1.15755 0.84007 1.31697 0.86989 1.26371 0.95579 1.04209 0.92038 1.70046 1.21570 1.35154 1.20844 0.85063 0.80100 0.76052 0.78476 1.18873 1.20090 1.17351 0.93056 0.92923 0.88850 0.90939 0.90454 0.93657 0.91010 0.89566 0.76396 0.90559 0.89821 0.73547 0.83968 0.84828 0.83621 0.84588 0.88110 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -8.95 9.83 -139.78 -1.37 -10.33 16 3 C 0.04 0.88 5.03 71.98 0.36 1.24 16 4 C 0.13 3.38 0.83 -10.79 -0.01 3.37 16 5 C -0.14 -4.00 8.54 71.98 0.61 -3.39 16 6 O -0.56 -16.46 12.49 -139.78 -1.75 -18.21 16 7 C 0.09 2.71 4.78 86.38 0.41 3.12 16 8 N -0.71 -27.96 4.90 -466.87 -2.29 -30.24 16 9 C 0.59 27.26 7.76 86.51 0.67 27.93 16 10 O -0.58 -27.70 16.86 -4.25 -0.07 -27.77 16 11 C -0.05 -2.43 6.76 39.91 0.27 -2.16 16 12 C -0.18 -8.50 10.55 22.63 0.24 -8.27 16 13 C -0.16 -7.43 6.16 -21.34 -0.13 -7.56 16 14 C -0.09 -3.61 10.06 22.31 0.22 -3.38 16 15 C -0.15 -5.48 9.97 22.03 0.22 -5.26 16 16 C -0.14 -5.33 10.02 22.32 0.22 -5.10 16 17 C -0.08 -3.89 8.51 22.38 0.19 -3.70 16 18 C 0.07 3.79 6.04 39.06 0.24 4.03 16 19 N -0.27 -14.09 2.82 -331.34 -0.93 -15.02 16 20 C -0.39 -19.13 7.70 84.09 0.65 -18.48 16 21 H 0.11 5.27 5.50 -2.91 -0.02 5.25 16 22 C 0.03 1.40 4.73 84.95 0.40 1.80 16 23 N -0.85 -43.15 10.58 21.67 0.23 -42.92 16 24 Si 0.98 37.96 29.57 68.60 2.03 39.99 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.51 6.30 -2.38 -0.02 1.49 16 34 H 0.07 2.01 7.53 -2.38 -0.02 2.00 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.39 8.57 9.04 -74.06 -0.67 7.90 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.42 17.48 3.55 -92.71 -0.33 17.15 16 40 H 0.14 6.29 8.06 -2.91 -0.02 6.27 16 41 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.10 4.93 6.53 -2.91 -0.02 4.91 16 45 H 0.29 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -66.73 370.96 1.70 -65.03 By element: Atomic # 1 Polarization: 53.65 SS G_CDS: 0.03 Total: 53.69 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.82 Total: -14.21 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.99 Total: -88.19 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -3.19 Total: -56.31 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -66.73 1.70 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610358846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.453 kcal (2) G-P(sol) polarization free energy of solvation -66.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds