Wall clock time and date at job start Tue Mar 31 2020 17:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 N 1.46510 * 109.47123 * 119.99445 * 2 1 3 5 5 C 1.46497 * 119.99767 * 326.01719 * 4 2 1 6 6 C 1.50703 * 109.47370 * 269.99680 * 5 4 2 7 7 H 1.08008 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00427 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00237 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47277 * 89.99873 * 10 8 6 12 12 H 1.48498 * 109.46831 * 210.00129 * 10 8 6 13 13 H 1.48501 * 109.46955 * 329.99782 * 10 8 6 14 14 C 1.34778 * 120.00205 * 146.01537 * 4 2 1 15 15 O 1.21355 * 119.99976 * 179.52429 * 14 4 2 16 16 C 1.49351 * 119.99736 * 359.52558 * 14 4 2 17 17 O 1.21379 * 120.00103 * 8.98486 * 16 14 4 18 18 N 1.34773 * 120.00014 * 188.98444 * 16 14 4 19 19 C 1.39721 * 120.00150 * 183.43003 * 18 16 14 20 20 C 1.39098 * 120.08620 * 331.83684 * 19 18 16 21 21 C 1.38108 * 119.67532 * 179.97438 * 20 19 18 22 22 C 1.38035 * 120.43927 * 0.20683 * 21 20 19 23 23 C 1.39325 * 120.39819 * 0.02562 * 22 21 20 24 24 C 1.38381 * 120.09185 * 151.82622 * 19 18 16 25 25 C 1.51930 * 132.11111 * 358.85774 * 24 19 18 26 26 C 1.54705 * 101.78312 * 195.83477 * 25 24 19 27 27 O 1.36150 * 129.85418 * 179.53478 * 23 22 21 28 28 H 1.09001 * 109.47573 * 306.35151 * 1 2 3 29 29 H 1.08998 * 109.47196 * 66.35668 * 1 2 3 30 30 H 1.09003 * 109.46952 * 186.35334 * 1 2 3 31 31 H 1.08999 * 109.47596 * 239.99077 * 2 1 3 32 32 H 1.08993 * 109.47298 * 182.93774 * 3 2 1 33 33 H 1.09002 * 109.46350 * 302.93375 * 3 2 1 34 34 H 1.08993 * 109.47170 * 62.93224 * 3 2 1 35 35 H 1.08998 * 109.47190 * 29.99609 * 5 4 2 36 36 H 1.09002 * 109.47027 * 149.99582 * 5 4 2 37 37 H 0.97001 * 120.00152 * 179.97438 * 9 8 6 38 38 H 0.96999 * 120.00121 * 3.43133 * 18 16 14 39 39 H 1.07998 * 120.16372 * 359.94559 * 20 19 18 40 40 H 1.08002 * 119.78253 * 180.21247 * 21 20 19 41 41 H 1.07993 * 119.79918 * 180.02562 * 22 21 20 42 42 H 1.09006 * 110.89314 * 77.77419 * 25 24 19 43 43 H 1.08992 * 111.11365 * 313.99452 * 25 24 19 44 44 H 1.08994 * 110.75506 * 216.54195 * 26 25 24 45 45 H 1.09001 * 110.75250 * 93.36299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.2706 -0.5969 2.4526 6 6 1.7630 0.5879 3.2432 7 1 2.5536 1.2092 2.8490 8 6 1.2043 0.8786 4.4696 9 7 1.6336 1.9129 5.1593 10 14 -0.1626 -0.1965 5.1518 11 1 0.4273 -1.2944 5.9590 12 1 -1.0560 0.6234 6.0091 13 1 -0.9458 -0.7729 4.0295 14 6 3.1554 -1.4120 1.1411 15 8 3.5645 -1.9768 2.1342 16 6 3.9120 -1.5161 -0.1424 17 8 3.5983 -0.8250 -1.0897 18 7 4.9431 -2.3774 -0.2489 19 6 5.6960 -2.4239 -1.4249 20 6 5.1134 -2.0789 -2.6400 21 6 5.8657 -2.1274 -3.7972 22 6 7.1885 -2.5195 -3.7554 23 6 7.7815 -2.8720 -2.5449 24 6 7.0234 -2.8130 -1.3840 25 6 7.9313 -3.2184 -0.2353 26 6 9.3310 -3.1094 -0.8852 27 8 9.0508 -3.2899 -2.2842 28 1 -0.3634 0.6091 0.8277 29 1 -0.3633 0.4121 -0.9414 30 1 -0.3633 -1.0214 0.1137 31 1 1.8934 -0.5140 -0.8899 32 1 3.1287 1.4430 -0.0527 33 1 1.6343 1.9712 -0.8626 34 1 1.7203 1.9409 0.9150 35 1 0.2096 -0.4733 2.2356 36 1 1.4191 -1.5078 3.0326 37 1 1.2403 2.1176 6.0220 38 1 5.1625 -2.9651 0.4910 39 1 4.0778 -1.7751 -2.6784 40 1 5.4160 -1.8566 -4.7411 41 1 7.7673 -2.5533 -4.6666 42 1 7.7266 -4.2418 0.0795 43 1 7.8361 -2.5281 0.6028 44 1 9.9893 -3.8971 -0.5190 45 1 9.7667 -2.1273 -0.7013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619521213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:15 Heat of formation + Delta-G solvation = -47.009258 kcal Electronic energy + Delta-G solvation = -28966.786340 eV Core-core repulsion = 24951.031521 eV Total energy + Delta-G solvation = -4015.754819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52390 -40.61749 -38.69334 -37.28887 -36.47121 -34.76264 -32.77432 -32.38165 -31.10513 -29.84562 -29.13599 -28.42429 -26.68962 -24.96005 -23.61086 -22.90787 -22.09667 -21.60814 -20.70751 -19.50784 -18.07993 -17.52360 -16.97393 -16.71093 -16.52069 -16.23835 -15.70621 -15.66750 -15.24846 -14.99183 -14.49316 -13.94457 -13.74547 -13.59677 -13.45669 -13.33325 -13.16662 -12.82851 -12.60678 -12.49829 -12.25621 -12.02334 -11.96743 -11.72714 -11.48942 -11.40289 -11.25839 -11.14359 -10.94997 -10.76466 -10.55083 -10.41769 -10.22562 -10.06381 -9.53989 -8.84199 -8.63906 -8.47698 -8.16282 -7.90649 -6.13792 -4.13159 0.94543 1.19596 1.83314 2.53314 3.03826 3.24316 3.30195 3.32229 3.45230 3.64965 3.83502 4.19347 4.33795 4.34349 4.52775 4.73296 4.81355 4.99303 5.12986 5.17530 5.18533 5.34608 5.38032 5.43208 5.53229 5.54128 5.59879 5.80616 5.98418 6.00207 6.10035 6.18119 6.23849 6.30156 6.36764 6.41481 6.52181 6.60166 6.63123 6.81127 6.97029 7.00765 7.03462 7.15903 7.51502 7.75386 8.00925 8.34323 8.54999 8.90020 9.44908 10.99057 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.003118 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.125355 B = 8977.819389 C = 9890.869840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 C -0.153 4.153 4 N -0.546 5.546 5 C 0.207 3.793 6 C -0.528 4.528 7 H 0.078 0.922 8 C 0.074 3.926 9 N -0.894 5.894 10 Si 0.873 3.127 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.498 3.502 15 O -0.523 6.523 16 C 0.510 3.490 17 O -0.490 6.490 18 N -0.647 5.647 19 C 0.201 3.799 20 C -0.157 4.157 21 C -0.066 4.066 22 C -0.157 4.157 23 C 0.124 3.876 24 C -0.208 4.208 25 C -0.109 4.109 26 C 0.054 3.946 27 O -0.305 6.305 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.422 0.578 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -9.953 -16.368 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 C -0.211 4.211 4 N -0.277 5.277 5 C 0.088 3.912 6 C -0.566 4.566 7 H 0.096 0.904 8 C -0.128 4.128 9 N -0.532 5.532 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.278 3.722 15 O -0.401 6.401 16 C 0.294 3.706 17 O -0.365 6.365 18 N -0.292 5.292 19 C 0.106 3.894 20 C -0.177 4.177 21 C -0.085 4.085 22 C -0.176 4.176 23 C 0.078 3.922 24 C -0.211 4.211 25 C -0.146 4.146 26 C -0.021 4.021 27 O -0.219 6.219 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.260 0.740 39 H 0.173 0.827 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.542 -9.695 -16.389 20.870 hybrid contribution -0.512 -0.569 1.172 1.399 sum 8.030 -10.263 -15.218 20.035 Atomic orbital electron populations 1.22150 0.95181 1.02063 1.02481 1.21817 0.94249 0.94685 0.88321 1.22092 1.00975 0.95611 1.02427 1.48033 1.21810 1.44958 1.12914 1.19924 0.91987 0.98701 0.80637 1.21266 1.21536 1.10843 1.02954 0.90353 1.24833 0.96693 0.94987 0.96323 1.69885 1.42372 1.27347 1.13643 0.86901 0.82436 0.80939 0.79747 1.19896 1.21001 1.19002 1.19463 0.82960 0.82257 0.87470 1.90747 1.66659 1.46881 1.35773 1.20938 0.80766 0.79288 0.89635 1.90559 1.64019 1.42237 1.39659 1.43261 1.30390 1.38943 1.16642 1.17022 0.88176 0.98075 0.86125 1.21491 1.02357 1.04013 0.89876 1.20797 0.92489 0.96796 0.98389 1.20250 0.95861 1.05957 0.95561 1.19242 0.84152 0.94723 0.94076 1.20467 0.93384 1.10989 0.96259 1.21810 0.92452 1.03230 0.97108 1.23810 0.97023 1.03049 0.78212 1.86836 1.28005 1.79229 1.27833 0.91046 0.91902 0.92788 0.86689 0.93142 0.92813 0.90603 0.93785 0.94439 0.92485 0.74026 0.82718 0.84667 0.85457 0.89100 0.88796 0.87537 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.08 37.15 0.30 -2.16 16 2 C 0.11 1.93 2.62 -67.93 -0.18 1.75 16 3 C -0.15 -2.71 9.17 37.16 0.34 -2.37 16 4 N -0.55 -11.15 2.38 -168.01 -0.40 -11.55 16 5 C 0.21 4.85 3.95 -5.19 -0.02 4.83 16 6 C -0.53 -14.54 9.13 -34.44 -0.31 -14.85 16 7 H 0.08 2.39 7.61 -52.48 -0.40 1.99 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 10 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 14 C 0.50 9.92 7.73 -11.63 -0.09 9.83 16 15 O -0.52 -11.69 16.10 5.49 0.09 -11.61 16 16 C 0.51 8.38 7.60 -11.63 -0.09 8.30 16 17 O -0.49 -8.05 9.49 5.47 0.05 -8.00 16 18 N -0.65 -8.98 5.32 -10.39 -0.06 -9.04 16 19 C 0.20 2.64 6.40 -83.89 -0.54 2.10 16 20 C -0.16 -1.97 8.77 -39.31 -0.34 -2.32 16 21 C -0.07 -0.69 10.01 -39.70 -0.40 -1.09 16 22 C -0.16 -1.67 10.06 -39.25 -0.39 -2.07 16 23 C 0.12 1.47 7.03 -38.98 -0.27 1.19 16 24 C -0.21 -2.48 6.19 -103.76 -0.64 -3.12 16 25 C -0.11 -1.00 7.04 -26.38 -0.19 -1.19 16 26 C 0.05 0.44 8.00 38.05 0.30 0.75 16 27 O -0.31 -3.43 11.11 -20.22 -0.22 -3.65 16 28 H 0.07 1.21 7.00 -51.93 -0.36 0.85 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 1.86 4.91 -52.82 -0.26 1.60 16 32 H 0.05 0.94 7.64 -51.93 -0.40 0.54 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.56 6.91 -51.93 -0.36 1.20 16 35 H 0.04 0.98 4.85 -51.93 -0.25 0.73 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.42 5.35 8.23 -40.82 -0.34 5.01 16 39 H 0.16 2.03 5.75 -52.49 -0.30 1.73 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -32.36 364.98 -7.55 -39.90 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.99 Total: 6.79 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.62 Total: 1.59 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.32 Total: -46.67 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.08 Total: -23.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.36 -7.55 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619521213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.105 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds