Wall clock time and date at job start Tue Mar 31 2020 17:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 N 1.46510 * 109.47123 * 119.99445 * 2 1 3 5 5 C 1.46497 * 119.99767 * 326.01719 * 4 2 1 6 6 C 1.50703 * 109.47370 * 269.99680 * 5 4 2 7 7 H 1.08008 * 119.99624 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00427 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00237 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47277 * 89.99873 * 10 8 6 12 12 H 1.48498 * 109.46831 * 210.00129 * 10 8 6 13 13 H 1.48501 * 109.46955 * 329.99782 * 10 8 6 14 14 C 1.34778 * 120.00205 * 146.01537 * 4 2 1 15 15 O 1.21355 * 119.99976 * 179.52429 * 14 4 2 16 16 C 1.49351 * 119.99736 * 359.52558 * 14 4 2 17 17 O 1.21379 * 120.00103 * 8.98486 * 16 14 4 18 18 N 1.34773 * 120.00014 * 188.98444 * 16 14 4 19 19 C 1.39721 * 120.00150 * 183.43003 * 18 16 14 20 20 C 1.39098 * 120.08620 * 331.83684 * 19 18 16 21 21 C 1.38108 * 119.67532 * 179.97438 * 20 19 18 22 22 C 1.38035 * 120.43927 * 0.20683 * 21 20 19 23 23 C 1.39325 * 120.39819 * 0.02562 * 22 21 20 24 24 C 1.38381 * 120.09185 * 151.82622 * 19 18 16 25 25 C 1.51930 * 132.11111 * 358.85774 * 24 19 18 26 26 C 1.54705 * 101.78312 * 195.83477 * 25 24 19 27 27 O 1.36150 * 129.85418 * 179.53478 * 23 22 21 28 28 H 1.09001 * 109.47573 * 306.35151 * 1 2 3 29 29 H 1.08998 * 109.47196 * 66.35668 * 1 2 3 30 30 H 1.09003 * 109.46952 * 186.35334 * 1 2 3 31 31 H 1.08999 * 109.47596 * 239.99077 * 2 1 3 32 32 H 1.08993 * 109.47298 * 182.93774 * 3 2 1 33 33 H 1.09002 * 109.46350 * 302.93375 * 3 2 1 34 34 H 1.08993 * 109.47170 * 62.93224 * 3 2 1 35 35 H 1.08998 * 109.47190 * 29.99609 * 5 4 2 36 36 H 1.09002 * 109.47027 * 149.99582 * 5 4 2 37 37 H 0.97001 * 120.00152 * 179.97438 * 9 8 6 38 38 H 0.96999 * 120.00121 * 3.43133 * 18 16 14 39 39 H 1.07998 * 120.16372 * 359.94559 * 20 19 18 40 40 H 1.08002 * 119.78253 * 180.21247 * 21 20 19 41 41 H 1.07993 * 119.79918 * 180.02562 * 22 21 20 42 42 H 1.09006 * 110.89314 * 77.77419 * 25 24 19 43 43 H 1.08992 * 111.11365 * 313.99452 * 25 24 19 44 44 H 1.08994 * 110.75506 * 216.54195 * 26 25 24 45 45 H 1.09001 * 110.75250 * 93.36299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.2706 -0.5969 2.4526 6 6 1.7630 0.5879 3.2432 7 1 2.5536 1.2092 2.8490 8 6 1.2043 0.8786 4.4696 9 7 1.6336 1.9129 5.1593 10 14 -0.1626 -0.1965 5.1518 11 1 0.4273 -1.2944 5.9590 12 1 -1.0560 0.6234 6.0091 13 1 -0.9458 -0.7729 4.0295 14 6 3.1554 -1.4120 1.1411 15 8 3.5645 -1.9768 2.1342 16 6 3.9120 -1.5161 -0.1424 17 8 3.5983 -0.8250 -1.0897 18 7 4.9431 -2.3774 -0.2489 19 6 5.6960 -2.4239 -1.4249 20 6 5.1134 -2.0789 -2.6400 21 6 5.8657 -2.1274 -3.7972 22 6 7.1885 -2.5195 -3.7554 23 6 7.7815 -2.8720 -2.5449 24 6 7.0234 -2.8130 -1.3840 25 6 7.9313 -3.2184 -0.2353 26 6 9.3310 -3.1094 -0.8852 27 8 9.0508 -3.2899 -2.2842 28 1 -0.3634 0.6091 0.8277 29 1 -0.3633 0.4121 -0.9414 30 1 -0.3633 -1.0214 0.1137 31 1 1.8934 -0.5140 -0.8899 32 1 3.1287 1.4430 -0.0527 33 1 1.6343 1.9712 -0.8626 34 1 1.7203 1.9409 0.9150 35 1 0.2096 -0.4733 2.2356 36 1 1.4191 -1.5078 3.0326 37 1 1.2403 2.1176 6.0220 38 1 5.1625 -2.9651 0.4910 39 1 4.0778 -1.7751 -2.6784 40 1 5.4160 -1.8566 -4.7411 41 1 7.7673 -2.5533 -4.6666 42 1 7.7266 -4.2418 0.0795 43 1 7.8361 -2.5281 0.6028 44 1 9.9893 -3.8971 -0.5190 45 1 9.7667 -2.1273 -0.7013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619521213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:14 Heat of formation + Delta-G solvation = -68.390337 kcal Electronic energy + Delta-G solvation = -28967.713493 eV Core-core repulsion = 24951.031521 eV Total energy + Delta-G solvation = -4016.681972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55649 -41.78074 -40.05161 -38.42622 -37.89675 -35.87981 -34.84496 -33.22042 -32.71891 -30.82648 -30.38774 -29.80601 -28.10702 -26.37740 -24.59758 -24.16683 -23.40823 -22.71753 -21.92637 -20.86876 -19.20401 -19.08259 -18.69034 -17.89702 -17.61393 -17.23977 -17.01903 -16.68772 -16.53105 -16.23517 -16.12035 -15.45650 -15.23025 -14.85527 -14.58727 -14.39739 -14.24605 -14.07189 -13.93255 -13.73322 -13.65773 -13.43261 -13.22424 -12.91393 -12.77344 -12.72634 -12.48133 -12.37549 -12.24577 -12.17302 -12.03956 -11.93828 -11.77442 -11.55797 -11.28571 -10.80279 -10.26321 -9.63529 -9.37321 -9.08028 -8.31380 -6.36448 -0.12594 0.30472 0.58639 1.20334 1.35681 1.37848 1.46378 2.04630 2.28214 2.32120 2.44415 2.71883 3.01729 3.16641 3.42954 3.61589 3.97113 4.01196 4.10229 4.16104 4.24602 4.33388 4.43593 4.46405 4.52797 4.62577 4.71883 4.79323 4.80423 4.83124 4.84384 4.86046 5.01021 5.05836 5.11424 5.15356 5.27900 5.32879 5.42207 5.45801 5.49650 5.52981 5.63337 5.91353 6.14623 6.21075 6.37342 6.60031 6.65026 6.91491 7.26475 8.85089 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.003118 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.125355 B = 8977.819389 C = 9890.869840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 C -0.144 4.144 4 N -0.554 5.554 5 C 0.216 3.784 6 C -0.529 4.529 7 H 0.032 0.968 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.942 3.058 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.235 1.235 14 C 0.490 3.510 15 O -0.556 6.556 16 C 0.518 3.482 17 O -0.492 6.492 18 N -0.634 5.634 19 C 0.176 3.824 20 C -0.169 4.169 21 C -0.061 4.061 22 C -0.155 4.155 23 C 0.110 3.890 24 C -0.215 4.215 25 C -0.111 4.111 26 C 0.052 3.948 27 O -0.316 6.316 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.133 0.867 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.426 0.574 39 H 0.148 0.852 40 H 0.165 0.835 41 H 0.150 0.850 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -11.608 -18.521 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.006 3.994 3 C -0.203 4.203 4 N -0.284 5.284 5 C 0.095 3.905 6 C -0.567 4.567 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.158 1.158 14 C 0.272 3.728 15 O -0.435 6.435 16 C 0.301 3.699 17 O -0.367 6.367 18 N -0.279 5.279 19 C 0.082 3.918 20 C -0.189 4.189 21 C -0.079 4.079 22 C -0.174 4.174 23 C 0.064 3.936 24 C -0.218 4.218 25 C -0.148 4.148 26 C -0.022 4.022 27 O -0.230 6.230 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.264 0.736 39 H 0.166 0.834 40 H 0.183 0.817 41 H 0.168 0.832 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.153 0.847 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.106 -11.362 -18.596 23.251 hybrid contribution -0.185 -0.014 1.747 1.756 sum 7.921 -11.376 -16.850 21.819 Atomic orbital electron populations 1.22135 0.93197 1.02605 1.03514 1.22102 0.95909 0.93847 0.87511 1.22002 0.99948 0.96365 1.01935 1.48127 1.22025 1.45405 1.12889 1.19636 0.93212 0.96085 0.81579 1.21434 1.20209 1.11516 1.03580 0.95013 1.25791 0.99641 0.96397 0.96624 1.70045 1.44437 1.29615 1.14344 0.85798 0.79217 0.78773 0.79745 1.19897 1.20381 1.15811 1.20110 0.82744 0.81389 0.88559 1.90712 1.67382 1.48086 1.37337 1.20135 0.81427 0.80187 0.88146 1.90545 1.64490 1.42629 1.39014 1.43076 1.29485 1.38005 1.17295 1.17202 0.88772 1.00036 0.85789 1.21575 1.02379 1.04451 0.90518 1.21109 0.92267 0.95715 0.98846 1.20616 0.96069 1.04576 0.96110 1.19530 0.84545 0.95021 0.94491 1.20723 0.93122 1.10374 0.97609 1.21916 0.92591 1.03896 0.96387 1.24052 0.96787 1.04611 0.76766 1.86821 1.27600 1.79212 1.29390 0.93054 0.88534 0.91736 0.84961 0.94842 0.89543 0.94241 0.91725 0.95371 0.92329 0.73551 0.83429 0.81709 0.83233 0.87779 0.88954 0.84743 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 8.08 71.98 0.58 -3.86 16 2 C 0.11 3.62 2.62 44.99 0.12 3.74 16 3 C -0.14 -5.16 9.17 71.98 0.66 -4.50 16 4 N -0.55 -22.79 2.38 -803.81 -1.92 -24.70 16 5 C 0.22 10.16 3.95 85.63 0.34 10.49 16 6 C -0.53 -30.24 9.13 25.60 0.23 -30.00 16 7 H 0.03 2.06 7.61 -2.91 -0.02 2.03 16 8 C 0.01 0.78 5.47 84.65 0.46 1.24 16 9 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 10 Si 0.94 42.95 27.47 68.60 1.88 44.83 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 14 C 0.49 19.87 7.73 87.24 0.67 20.54 16 15 O -0.56 -25.52 16.10 -3.26 -0.05 -25.57 16 16 C 0.52 17.06 7.60 87.24 0.66 17.72 16 17 O -0.49 -15.86 9.49 -3.34 -0.03 -15.89 16 18 N -0.63 -17.53 5.32 -305.13 -1.62 -19.15 16 19 C 0.18 4.50 6.40 38.12 0.24 4.74 16 20 C -0.17 -4.03 8.77 22.45 0.20 -3.83 16 21 C -0.06 -1.13 10.01 22.19 0.22 -0.91 16 22 C -0.15 -2.93 10.06 22.48 0.23 -2.70 16 23 C 0.11 2.43 7.03 22.66 0.16 2.59 16 24 C -0.22 -4.91 6.19 -19.31 -0.12 -5.03 16 25 C -0.11 -1.91 7.04 30.82 0.22 -1.70 16 26 C 0.05 0.76 8.00 72.56 0.58 1.34 16 27 O -0.32 -6.51 11.11 -95.26 -1.06 -7.57 16 28 H 0.05 1.66 7.00 -2.39 -0.02 1.64 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.13 4.06 4.91 -16.57 -0.08 3.98 16 32 H 0.03 1.27 7.64 -2.39 -0.02 1.25 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.68 6.91 -2.39 -0.02 1.66 16 35 H 0.07 2.78 4.85 -2.39 -0.01 2.77 16 36 H 0.03 1.39 6.85 -2.39 -0.02 1.37 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.43 10.88 8.23 -92.71 -0.76 10.12 16 39 H 0.15 3.70 5.75 -2.91 -0.02 3.69 16 40 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.20 364.98 3.11 -70.09 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.15 Total: 26.59 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.46 Total: 9.87 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.24 Total: -102.35 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.14 Total: -49.03 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.83 kcal Total: -73.20 3.11 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619521213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.698 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds