Wall clock time and date at job start Tue Mar 31 2020 17:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47363 * 2 1 4 4 O 1.21294 * 119.99683 * 359.97438 * 3 2 1 5 5 C 1.46859 * 120.00205 * 179.97438 * 3 2 1 6 6 C 1.40056 * 120.09728 * 179.97438 * 5 3 2 7 7 C 1.36597 * 119.90291 * 180.02562 * 6 5 3 8 8 C 1.39258 * 120.09834 * 0.02562 * 7 6 5 9 9 N 1.39160 * 119.90451 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99939 * 35.17221 * 9 8 7 11 11 O 1.21358 * 119.99790 * 355.42899 * 10 9 8 12 12 C 1.49362 * 119.99997 * 175.43129 * 10 9 8 13 13 O 1.21359 * 119.99763 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99997 * 180.02562 * 12 10 9 15 15 C 1.46508 * 119.99659 * 179.97438 * 14 12 10 16 16 H 1.08993 * 109.47079 * 34.99566 * 15 14 12 17 17 C 1.50698 * 109.46506 * 155.00099 * 15 14 12 18 18 H 1.08001 * 120.00306 * 359.97438 * 17 15 14 19 19 C 1.37884 * 119.99412 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99802 * 179.97438 * 19 17 15 21 21 Si 1.86794 * 120.00219 * 359.97438 * 19 17 15 22 22 H 1.48509 * 109.46917 * 270.00011 * 21 19 17 23 23 H 1.48496 * 109.47416 * 29.99688 * 21 19 17 24 24 H 1.48500 * 109.47461 * 150.00266 * 21 19 17 25 25 C 1.52999 * 109.46782 * 274.99834 * 15 14 12 26 26 C 1.53000 * 109.47273 * 65.00419 * 25 15 14 27 27 C 1.39255 * 120.18918 * 0.27214 * 8 7 6 28 28 C 1.36604 * 120.10039 * 359.45050 * 27 8 7 29 29 H 1.08997 * 109.47564 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47215 * 300.00136 * 1 2 3 31 31 H 1.09003 * 109.46968 * 59.99517 * 1 2 3 32 32 H 1.09002 * 109.47215 * 239.99864 * 2 1 3 33 33 H 1.09003 * 109.47341 * 120.00091 * 2 1 3 34 34 H 1.08004 * 120.04644 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.95177 * 179.97438 * 7 6 5 36 36 H 0.96995 * 119.99789 * 215.17147 * 9 8 7 37 37 H 0.96992 * 119.99864 * 359.97438 * 14 12 10 38 38 H 0.96998 * 119.99954 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.46936 * 185.00443 * 25 15 14 40 40 H 1.09001 * 109.47318 * 305.00312 * 25 15 14 41 41 H 1.08993 * 109.47156 * 60.00007 * 26 25 15 42 42 H 1.09001 * 109.47116 * 180.02562 * 26 25 15 43 43 H 1.08998 * 109.46823 * 299.99364 * 26 25 15 44 44 H 1.08003 * 119.94949 * 179.69873 * 27 8 7 45 45 H 1.07990 * 120.05367 * 180.27653 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 0.0006 6 6 3.9453 3.0088 0.0000 7 6 5.2891 3.2539 0.0000 8 6 6.1923 2.1939 0.0000 9 7 7.5605 2.4482 -0.0005 10 6 8.0489 3.5095 0.6714 11 8 7.2898 4.2900 1.2074 12 6 9.5244 3.7251 0.7562 13 8 10.2835 2.9443 0.2206 14 7 10.0129 4.7862 1.4286 15 6 11.4603 4.9973 1.5122 16 1 11.9287 4.6757 0.5821 17 6 11.7422 6.4605 1.7371 18 1 10.9251 7.1629 1.8100 19 6 13.0434 6.9024 1.8499 20 7 13.2896 8.1793 2.0456 21 14 14.4566 5.6873 1.7245 22 1 14.7799 5.1630 3.0758 23 1 14.0651 4.5624 0.8378 24 1 15.6484 6.3705 1.1606 25 6 12.0278 4.1836 2.6770 26 6 11.8524 2.6911 2.3897 27 6 5.7302 0.8802 -0.0057 28 6 4.3881 0.6261 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2455 3.8315 -0.0004 35 1 5.6517 4.2712 -0.0008 36 1 8.1625 1.8615 -0.4844 37 1 9.4062 5.4100 1.8570 38 1 14.2049 8.4902 2.1253 39 1 13.0877 4.4088 2.7951 40 1 11.4971 4.4420 3.5934 41 1 12.3830 2.4326 1.4734 42 1 12.2563 2.1114 3.2198 43 1 10.7925 2.4659 2.2717 44 1 6.4341 0.0611 -0.0106 45 1 4.0306 -0.3930 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627512965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:09 Heat of formation + Delta-G solvation = -77.888173 kcal Electronic energy + Delta-G solvation = -27486.802739 eV Core-core repulsion = 23469.708910 eV Total energy + Delta-G solvation = -4017.093829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18981 -40.16979 -39.07852 -37.98448 -35.83931 -34.97991 -33.33843 -32.50458 -31.66835 -31.41067 -30.44446 -27.86751 -26.15995 -24.64901 -23.38706 -22.70813 -22.38576 -20.81298 -19.94457 -19.81567 -18.91693 -17.82136 -17.16723 -16.79486 -16.16896 -15.91856 -15.80002 -15.68957 -15.52408 -14.82211 -14.58637 -14.32575 -14.13180 -13.75481 -13.68065 -13.58990 -13.20304 -13.09820 -12.84935 -12.60063 -12.46742 -12.16649 -12.09078 -11.93917 -11.63713 -11.55988 -11.39436 -11.23429 -11.00288 -10.75903 -10.63831 -10.05210 -9.99893 -9.67885 -9.43950 -9.37927 -9.24878 -8.87898 -8.51639 -8.36442 -6.29233 -4.33643 0.24988 1.11034 1.50179 2.13122 2.41533 3.15843 3.28600 3.30544 3.34795 3.55329 3.68453 3.81945 4.22263 4.39136 4.56256 4.61823 4.71041 4.77424 4.84214 4.97294 5.02728 5.09564 5.19336 5.33576 5.43815 5.53169 5.66144 5.77830 5.80093 5.82447 5.88049 5.93297 5.99988 6.03964 6.16499 6.46664 6.53216 6.59041 6.62684 6.73493 6.83326 6.98744 7.10366 7.25355 7.31477 7.56068 7.92570 8.30766 8.41332 8.70866 9.28675 10.82510 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.002112 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.184148 B =13257.025042 C =13815.969749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.171 4.171 3 C 0.397 3.603 4 O -0.456 6.456 5 C -0.196 4.196 6 C -0.038 4.038 7 C -0.137 4.137 8 C 0.184 3.816 9 N -0.652 5.652 10 C 0.508 3.492 11 O -0.495 6.495 12 C 0.497 3.503 13 O -0.529 6.529 14 N -0.658 5.658 15 C 0.241 3.759 16 H 0.055 0.945 17 C -0.541 4.541 18 H 0.084 0.916 19 C 0.081 3.919 20 N -0.887 5.887 21 Si 0.883 3.117 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.292 1.292 25 C -0.141 4.141 26 C -0.145 4.145 27 C -0.158 4.158 28 C -0.051 4.051 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.426 0.574 37 H 0.409 0.591 38 H 0.269 0.731 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.048 0.952 44 H 0.135 0.865 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -18.766 -4.447 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.275 3.725 4 O -0.332 6.332 5 C -0.198 4.198 6 C -0.057 4.057 7 C -0.157 4.157 8 C 0.088 3.912 9 N -0.298 5.298 10 C 0.291 3.709 11 O -0.367 6.367 12 C 0.276 3.724 13 O -0.408 6.408 14 N -0.307 5.307 15 C 0.138 3.862 16 H 0.073 0.927 17 C -0.578 4.578 18 H 0.102 0.898 19 C -0.124 4.124 20 N -0.523 5.523 21 Si 0.712 3.288 22 H -0.201 1.201 23 H -0.185 1.185 24 H -0.220 1.220 25 C -0.180 4.180 26 C -0.203 4.203 27 C -0.179 4.179 28 C -0.070 4.070 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.264 0.736 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.266 -18.049 -4.372 26.049 hybrid contribution 1.052 -0.571 0.056 1.198 sum -17.214 -18.620 -4.316 25.723 Atomic orbital electron populations 1.21596 0.93665 1.01782 1.03144 1.21992 0.98362 0.95837 1.04597 1.22412 0.87812 0.91187 0.71059 1.90532 1.58386 1.47784 1.36496 1.20497 0.94931 0.94395 1.09985 1.21089 0.95273 0.96213 0.93081 1.21138 0.92403 1.00121 1.02029 1.18104 0.82984 0.93850 0.96232 1.43186 1.06381 1.29606 1.50646 1.20947 0.90775 0.80896 0.78250 1.90759 1.59529 1.42842 1.43597 1.19561 0.87062 0.83864 0.81937 1.90750 1.58474 1.44869 1.46670 1.46124 1.10812 1.24066 1.49716 1.19382 0.74918 0.96415 0.95464 0.92698 1.20992 0.94496 0.89987 1.52370 0.89849 1.24825 0.98520 0.95241 0.93796 1.69857 1.20885 1.13852 1.47676 0.86909 0.81765 0.81347 0.78764 1.20100 1.18453 1.21973 1.22322 1.00840 0.94208 1.00584 1.21892 1.01269 0.96749 1.00368 1.20688 0.96440 0.94905 1.05822 1.20942 0.92091 0.98700 0.95279 0.92054 0.92092 0.92117 0.88329 0.88314 0.84520 0.83442 0.73570 0.75560 0.92101 0.92257 0.91877 0.92629 0.94534 0.93334 0.84696 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.15 0.34 -0.54 16 2 C -0.17 -0.95 5.02 -27.88 -0.14 -1.09 16 3 C 0.40 3.66 7.11 -30.82 -0.22 3.44 16 4 O -0.46 -5.71 15.96 5.55 0.09 -5.62 16 5 C -0.20 -1.85 5.87 -105.04 -0.62 -2.47 16 6 C -0.04 -0.42 9.54 -39.49 -0.38 -0.79 16 7 C -0.14 -1.64 8.62 -39.80 -0.34 -1.98 16 8 C 0.18 2.02 6.29 -83.78 -0.53 1.50 16 9 N -0.65 -7.60 5.29 -10.28 -0.05 -7.66 16 10 C 0.51 7.57 7.72 -11.63 -0.09 7.48 16 11 O -0.49 -8.15 13.88 5.49 0.08 -8.07 16 12 C 0.50 8.63 6.46 -11.63 -0.08 8.55 16 13 O -0.53 -9.80 13.62 5.49 0.07 -9.72 16 14 N -0.66 -12.66 5.01 -55.39 -0.28 -12.94 16 15 C 0.24 5.40 1.83 -69.08 -0.13 5.27 16 16 H 0.06 1.33 6.64 -51.93 -0.34 0.98 16 17 C -0.54 -14.12 9.31 -34.44 -0.32 -14.44 16 18 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 20 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 21 Si 0.88 20.74 24.41 -169.99 -4.15 16.59 16 22 H -0.27 -6.25 6.83 56.52 0.39 -5.86 16 23 H -0.26 -5.94 6.53 56.52 0.37 -5.57 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.14 -2.95 5.11 -26.73 -0.14 -3.08 16 26 C -0.15 -2.67 8.51 37.16 0.32 -2.36 16 27 C -0.16 -1.31 9.90 -39.79 -0.39 -1.70 16 28 C -0.05 -0.37 9.42 -39.49 -0.37 -0.75 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.10 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.10 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.14 1.48 7.64 -52.48 -0.40 1.08 16 35 H 0.15 1.96 6.21 -52.49 -0.33 1.64 16 36 H 0.43 4.18 8.29 -40.82 -0.34 3.84 16 37 H 0.41 7.53 8.01 -40.82 -0.33 7.21 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.06 1.30 3.21 -51.93 -0.17 1.14 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.86 5.64 -51.93 -0.29 0.57 16 44 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.14 0.54 7.03 -52.49 -0.37 0.17 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -31.18 369.63 -7.02 -38.20 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.95 Total: 9.35 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.18 Total: -0.86 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.44 Total: -45.43 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.24 Total: -23.42 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.15 Total: 16.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.18 -7.02 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627512965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.690 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds