Wall clock time and date at job start Tue Mar 31 2020 17:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47363 * 2 1 4 4 O 1.21294 * 119.99683 * 359.97438 * 3 2 1 5 5 C 1.46859 * 120.00205 * 179.97438 * 3 2 1 6 6 C 1.40056 * 120.09728 * 179.97438 * 5 3 2 7 7 C 1.36597 * 119.90291 * 180.02562 * 6 5 3 8 8 C 1.39258 * 120.09834 * 0.02562 * 7 6 5 9 9 N 1.39160 * 119.90451 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99939 * 35.17221 * 9 8 7 11 11 O 1.21358 * 119.99790 * 355.42899 * 10 9 8 12 12 C 1.49362 * 119.99997 * 175.43129 * 10 9 8 13 13 O 1.21359 * 119.99763 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99997 * 180.02562 * 12 10 9 15 15 C 1.46508 * 119.99659 * 179.97438 * 14 12 10 16 16 H 1.08993 * 109.47079 * 34.99566 * 15 14 12 17 17 C 1.50698 * 109.46506 * 155.00099 * 15 14 12 18 18 H 1.08001 * 120.00306 * 359.97438 * 17 15 14 19 19 C 1.37884 * 119.99412 * 179.97438 * 17 15 14 20 20 N 1.31513 * 119.99802 * 179.97438 * 19 17 15 21 21 Si 1.86794 * 120.00219 * 359.97438 * 19 17 15 22 22 H 1.48509 * 109.46917 * 270.00011 * 21 19 17 23 23 H 1.48496 * 109.47416 * 29.99688 * 21 19 17 24 24 H 1.48500 * 109.47461 * 150.00266 * 21 19 17 25 25 C 1.52999 * 109.46782 * 274.99834 * 15 14 12 26 26 C 1.53000 * 109.47273 * 65.00419 * 25 15 14 27 27 C 1.39255 * 120.18918 * 0.27214 * 8 7 6 28 28 C 1.36604 * 120.10039 * 359.45050 * 27 8 7 29 29 H 1.08997 * 109.47564 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47215 * 300.00136 * 1 2 3 31 31 H 1.09003 * 109.46968 * 59.99517 * 1 2 3 32 32 H 1.09002 * 109.47215 * 239.99864 * 2 1 3 33 33 H 1.09003 * 109.47341 * 120.00091 * 2 1 3 34 34 H 1.08004 * 120.04644 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.95177 * 179.97438 * 7 6 5 36 36 H 0.96995 * 119.99789 * 215.17147 * 9 8 7 37 37 H 0.96992 * 119.99864 * 359.97438 * 14 12 10 38 38 H 0.96998 * 119.99954 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.46936 * 185.00443 * 25 15 14 40 40 H 1.09001 * 109.47318 * 305.00312 * 25 15 14 41 41 H 1.08993 * 109.47156 * 60.00007 * 26 25 15 42 42 H 1.09001 * 109.47116 * 180.02562 * 26 25 15 43 43 H 1.08998 * 109.46823 * 299.99364 * 26 25 15 44 44 H 1.08003 * 119.94949 * 179.69873 * 27 8 7 45 45 H 1.07990 * 120.05367 * 180.27653 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 -0.0005 5 6 3.4762 1.6892 0.0006 6 6 3.9453 3.0088 0.0000 7 6 5.2891 3.2539 0.0000 8 6 6.1923 2.1939 0.0000 9 7 7.5605 2.4482 -0.0005 10 6 8.0489 3.5095 0.6714 11 8 7.2898 4.2900 1.2074 12 6 9.5244 3.7251 0.7562 13 8 10.2835 2.9443 0.2206 14 7 10.0129 4.7862 1.4286 15 6 11.4603 4.9973 1.5122 16 1 11.9287 4.6757 0.5821 17 6 11.7422 6.4605 1.7371 18 1 10.9251 7.1629 1.8100 19 6 13.0434 6.9024 1.8499 20 7 13.2896 8.1793 2.0456 21 14 14.4566 5.6873 1.7245 22 1 14.7799 5.1630 3.0758 23 1 14.0651 4.5624 0.8378 24 1 15.6484 6.3705 1.1606 25 6 12.0278 4.1836 2.6770 26 6 11.8524 2.6911 2.3897 27 6 5.7302 0.8802 -0.0057 28 6 4.3881 0.6261 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2455 3.8315 -0.0004 35 1 5.6517 4.2712 -0.0008 36 1 8.1625 1.8615 -0.4844 37 1 9.4062 5.4100 1.8570 38 1 14.2049 8.4902 2.1253 39 1 13.0877 4.4088 2.7951 40 1 11.4971 4.4420 3.5934 41 1 12.3830 2.4326 1.4734 42 1 12.2563 2.1114 3.2198 43 1 10.7925 2.4659 2.2717 44 1 6.4341 0.0611 -0.0106 45 1 4.0306 -0.3930 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627512965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:08 Heat of formation + Delta-G solvation = -99.708905 kcal Electronic energy + Delta-G solvation = -27487.748957 eV Core-core repulsion = 23469.708910 eV Total energy + Delta-G solvation = -4018.040047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29091 -41.09134 -40.24993 -39.00163 -37.39900 -36.08460 -34.43626 -33.88440 -33.27185 -32.14459 -31.27044 -29.63297 -27.16650 -25.62051 -24.63961 -24.00014 -23.20385 -22.18355 -21.36452 -20.61553 -20.21210 -18.88267 -18.48978 -17.96548 -17.56343 -17.24762 -17.04402 -16.60108 -16.38467 -16.08691 -15.84059 -15.33069 -15.15491 -15.09050 -14.90321 -14.52715 -14.32142 -14.13115 -13.89406 -13.80517 -13.73473 -13.60211 -13.10445 -13.00094 -12.90755 -12.72528 -12.58688 -12.38741 -12.23735 -11.97854 -11.86622 -11.55871 -11.37903 -11.30358 -10.89984 -10.80044 -10.59605 -10.12312 -10.01106 -9.36979 -8.39043 -6.47370 -0.57058 0.29754 0.38277 1.17391 1.29561 1.37023 1.43071 1.46430 2.07276 2.25646 2.59792 2.77065 2.95974 3.06051 3.35868 3.74383 3.87563 4.08336 4.20269 4.24360 4.25539 4.29551 4.33027 4.39184 4.41148 4.46875 4.75509 4.81153 4.95687 4.98767 5.03905 5.05957 5.07848 5.10241 5.13673 5.16777 5.23083 5.26402 5.35550 5.39666 5.45024 5.49011 5.76455 5.85224 6.07417 6.45964 6.54132 6.58453 6.67219 6.93211 7.20162 8.76198 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.002112 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.184148 B =13257.025042 C =13815.969749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.164 4.164 3 C 0.395 3.605 4 O -0.501 6.501 5 C -0.200 4.200 6 C -0.056 4.056 7 C -0.154 4.154 8 C 0.163 3.837 9 N -0.632 5.632 10 C 0.515 3.485 11 O -0.517 6.517 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.668 5.668 15 C 0.248 3.752 16 H 0.041 0.959 17 C -0.542 4.542 18 H 0.050 0.950 19 C 0.028 3.972 20 N -0.933 5.933 21 Si 0.941 3.059 22 H -0.258 1.258 23 H -0.249 1.249 24 H -0.294 1.294 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.033 4.033 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.436 0.564 37 H 0.410 0.590 38 H 0.271 0.729 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.170 0.830 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -23.767 -4.624 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.276 3.724 4 O -0.380 6.380 5 C -0.202 4.202 6 C -0.075 4.075 7 C -0.174 4.174 8 C 0.068 3.932 9 N -0.279 5.279 10 C 0.298 3.702 11 O -0.391 6.391 12 C 0.282 3.718 13 O -0.415 6.415 14 N -0.317 5.317 15 C 0.145 3.855 16 H 0.059 0.941 17 C -0.580 4.580 18 H 0.069 0.931 19 C -0.173 4.173 20 N -0.572 5.572 21 Si 0.767 3.233 22 H -0.184 1.184 23 H -0.173 1.173 24 H -0.221 1.221 25 C -0.179 4.179 26 C -0.194 4.194 27 C -0.164 4.164 28 C -0.052 4.052 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.277 0.723 37 H 0.246 0.754 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.187 0.813 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -18.513 -23.110 -4.572 29.962 hybrid contribution 0.948 0.982 0.055 1.366 sum -17.565 -22.129 -4.517 28.611 Atomic orbital electron populations 1.21623 0.94461 1.02780 1.01609 1.22086 0.97658 0.93128 1.07221 1.23057 0.87324 0.92656 0.69327 1.90529 1.59252 1.49524 1.38684 1.20755 0.95879 0.94188 1.09371 1.21063 0.94741 0.97306 0.94432 1.20982 0.93170 0.99634 1.03657 1.18296 0.81998 0.94966 0.97946 1.42971 1.07085 1.28367 1.49509 1.20355 0.89192 0.81782 0.78918 1.90774 1.59434 1.43887 1.45010 1.19858 0.88309 0.82862 0.80775 1.90735 1.59212 1.44933 1.46598 1.45958 1.09638 1.25213 1.50896 1.19049 0.76855 0.94122 0.95507 0.94116 1.21236 0.93684 0.91796 1.51288 0.93142 1.25639 1.01265 0.96781 0.93568 1.69990 1.21585 1.15931 1.49663 0.85961 0.78304 0.79343 0.79649 1.18405 1.17291 1.22146 1.22244 1.00043 0.95872 0.99757 1.21799 1.01655 0.94840 1.01102 1.21078 0.97543 0.94154 1.03584 1.21425 0.91094 1.00095 0.92541 0.89671 0.93805 0.93652 0.85263 0.85506 0.85896 0.85912 0.72300 0.75387 0.91972 0.93116 0.91547 0.93254 0.91882 0.92974 0.81268 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.20 71.98 0.66 -0.82 16 2 C -0.16 -1.18 5.02 29.85 0.15 -1.03 16 3 C 0.40 6.62 7.11 27.95 0.20 6.82 16 4 O -0.50 -12.77 15.96 -3.07 -0.05 -12.82 16 5 C -0.20 -3.37 5.87 -20.14 -0.12 -3.49 16 6 C -0.06 -1.28 9.54 22.33 0.21 -1.06 16 7 C -0.15 -3.78 8.62 22.13 0.19 -3.59 16 8 C 0.16 3.30 6.29 38.47 0.24 3.54 16 9 N -0.63 -13.73 5.29 -304.78 -1.61 -15.34 16 10 C 0.52 15.15 7.72 87.24 0.67 15.82 16 11 O -0.52 -17.43 13.88 -3.27 -0.05 -17.48 16 12 C 0.50 17.14 6.46 87.24 0.56 17.70 16 13 O -0.54 -19.06 13.62 -3.27 -0.04 -19.10 16 14 N -0.67 -25.94 5.01 -447.52 -2.24 -28.18 16 15 C 0.25 11.15 1.83 44.24 0.08 11.23 16 16 H 0.04 1.96 6.64 -2.39 -0.02 1.94 16 17 C -0.54 -29.17 9.31 25.60 0.24 -28.93 16 18 H 0.05 2.97 7.98 -2.91 -0.02 2.95 16 19 C 0.03 1.52 5.45 84.66 0.46 1.98 16 20 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 21 Si 0.94 42.67 24.41 68.60 1.67 44.34 16 22 H -0.26 -10.99 6.83 99.48 0.68 -10.31 16 23 H -0.25 -10.75 6.53 99.48 0.65 -10.10 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 C -0.14 -5.68 5.11 30.59 0.16 -5.52 16 26 C -0.14 -4.65 8.51 71.98 0.61 -4.04 16 27 C -0.14 -1.76 9.90 22.13 0.22 -1.54 16 28 C -0.03 -0.33 9.42 22.33 0.21 -0.12 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 32 H 0.13 0.22 8.08 -2.39 -0.02 0.20 16 33 H 0.13 0.29 8.08 -2.39 -0.02 0.27 16 34 H 0.12 2.98 7.64 -2.91 -0.02 2.96 16 35 H 0.12 3.55 6.21 -2.91 -0.02 3.54 16 36 H 0.44 7.46 8.29 -92.71 -0.77 6.69 16 37 H 0.41 15.68 8.01 -92.71 -0.74 14.94 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.05 2.13 3.21 -2.38 -0.01 2.12 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 1.73 7.85 -2.39 -0.02 1.72 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.72 5.64 -2.39 -0.01 1.70 16 44 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.18 0.10 7.03 -2.92 -0.02 0.08 16 Total: -1.00 -71.80 369.63 2.19 -69.61 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.54 Total: 27.30 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.75 Total: 6.94 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.56 Total: -98.80 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.14 Total: -49.40 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.67 Total: 44.34 kcal Total: -71.80 2.19 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627512965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.095 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds