Wall clock time and date at job start Tue Mar 31 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47137 * 2 1 4 4 O 1.21292 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.46862 * 120.00011 * 180.02562 * 3 2 1 6 6 C 1.40056 * 120.09403 * 359.72609 * 5 3 2 7 7 C 1.36601 * 119.90135 * 179.71620 * 6 5 3 8 8 C 1.39262 * 120.09807 * 0.56105 * 7 6 5 9 9 N 1.39158 * 119.90326 * 179.69599 * 8 7 6 10 10 C 1.34776 * 119.99460 * 213.65412 * 9 8 7 11 11 O 1.21357 * 120.00272 * 5.28235 * 10 9 8 12 12 C 1.49366 * 119.99836 * 185.28244 * 10 9 8 13 13 O 1.21357 * 119.99892 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00434 * 180.02562 * 12 10 9 15 15 C 1.46494 * 120.00559 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.46875 * 325.00165 * 15 14 12 17 17 C 1.50697 * 109.47527 * 204.99963 * 15 14 12 18 18 H 1.08009 * 119.99844 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00394 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99919 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00329 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46808 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46910 * 120.00180 * 21 19 17 24 24 H 1.48495 * 109.47162 * 240.00073 * 21 19 17 25 25 C 1.52995 * 109.47066 * 84.99891 * 15 14 12 26 26 C 1.53009 * 109.47332 * 295.00118 * 25 15 14 27 27 C 1.39254 * 120.18666 * 359.71295 * 8 7 6 28 28 C 1.36599 * 120.10292 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.46860 * 59.99807 * 1 2 3 30 30 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47112 * 300.00254 * 1 2 3 32 32 H 1.08999 * 109.46860 * 120.00193 * 2 1 3 33 33 H 1.09008 * 109.46982 * 240.00075 * 2 1 3 34 34 H 1.08000 * 120.04887 * 359.97438 * 6 5 3 35 35 H 1.08001 * 119.94983 * 180.25396 * 7 6 5 36 36 H 0.96993 * 120.00150 * 33.65666 * 9 8 7 37 37 H 0.97001 * 119.99351 * 359.97438 * 14 12 10 38 38 H 0.97001 * 120.00053 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47520 * 55.00146 * 25 15 14 40 40 H 1.09000 * 109.47311 * 175.00308 * 25 15 14 41 41 H 1.08996 * 109.46840 * 300.00444 * 26 25 15 42 42 H 1.09000 * 109.46768 * 59.99857 * 26 25 15 43 43 H 1.08996 * 109.47040 * 179.97438 * 26 25 15 44 44 H 1.08007 * 119.94970 * 179.97438 * 27 8 7 45 45 H 1.07996 * 120.05581 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3427 0.0005 5 6 3.4762 1.6891 -0.0006 6 6 4.3881 0.6261 0.0047 7 6 5.7303 0.8802 -0.0017 8 6 6.1923 2.1939 -0.0017 9 7 7.5605 2.4481 -0.0018 10 6 8.0455 3.5264 0.6451 11 8 7.3031 4.2217 1.3069 12 6 9.4969 3.8656 0.5474 13 8 10.2394 3.1699 -0.1141 14 7 9.9822 4.9435 1.1946 15 6 11.4057 5.2759 1.0993 16 1 11.9907 4.3575 1.0505 17 6 11.8184 6.0706 2.3113 18 1 11.0928 6.3044 3.0765 19 6 13.1223 6.4984 2.4441 20 7 14.0059 6.2133 1.5126 21 14 13.6337 7.4842 3.9462 22 1 12.4615 7.6698 4.8389 23 1 14.7013 6.7550 4.6768 24 1 14.1448 8.8107 3.5172 25 6 11.6524 6.1052 -0.1625 26 6 11.3515 5.2550 -1.3986 27 6 5.2892 3.2538 -0.0011 28 6 3.9453 3.0088 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 4.0306 -0.3931 0.0096 35 1 6.4341 0.0610 -0.0018 36 1 8.1650 1.8493 -0.4675 37 1 9.3887 5.4993 1.7236 38 1 14.9234 6.5140 1.6062 39 1 11.0015 6.9795 -0.1557 40 1 12.6933 6.4274 -0.1878 41 1 12.0024 4.3808 -1.4054 42 1 10.3105 4.9328 -1.3733 43 1 11.5268 5.8461 -2.2975 44 1 5.6518 4.2712 -0.0007 45 1 3.2456 3.8314 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627512966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:14 Heat of formation + Delta-G solvation = -87.561041 kcal Electronic energy + Delta-G solvation = -27400.955466 eV Core-core repulsion = 23383.442190 eV Total energy + Delta-G solvation = -4017.513276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10814 -40.10488 -38.93713 -37.88640 -35.61963 -34.85407 -33.31649 -32.49405 -31.40169 -31.06889 -30.38417 -27.40353 -26.03934 -24.59719 -23.45376 -22.79114 -22.31237 -20.50981 -19.84674 -19.57370 -18.79043 -17.80419 -17.09128 -16.51529 -16.04462 -15.80903 -15.76909 -15.62031 -15.23186 -14.65488 -14.49386 -14.27293 -14.07913 -13.73071 -13.60690 -13.46091 -13.10279 -12.84881 -12.79387 -12.56879 -12.18062 -12.13532 -11.68406 -11.56385 -11.54202 -11.39792 -11.30673 -11.03183 -10.92913 -10.62862 -10.41336 -10.32465 -9.96779 -9.76707 -9.40509 -9.19821 -9.16037 -8.62821 -8.44545 -8.12260 -6.22820 -4.32671 0.28527 1.14152 1.60067 2.19279 2.51257 3.19369 3.27887 3.31333 3.44677 3.64575 3.71127 3.93562 4.27901 4.41969 4.59381 4.63880 4.73005 4.85641 4.96389 5.00315 5.09621 5.12240 5.23514 5.35350 5.45367 5.54894 5.68517 5.80610 5.84850 5.95903 6.07575 6.19097 6.25228 6.29561 6.48428 6.61288 6.85729 6.89247 7.03304 7.06786 7.20179 7.27791 7.40384 7.56984 7.68743 7.76485 8.01833 8.34021 8.53354 8.78409 9.34471 10.82572 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.002059 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.846484 B =13597.687608 C =14031.889991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.457 6.457 5 C -0.199 4.199 6 C -0.049 4.049 7 C -0.160 4.160 8 C 0.190 3.810 9 N -0.653 5.653 10 C 0.507 3.493 11 O -0.498 6.498 12 C 0.494 3.506 13 O -0.528 6.528 14 N -0.665 5.665 15 C 0.267 3.733 16 H 0.056 0.944 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.881 5.881 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.129 4.129 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.036 4.036 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.426 0.574 37 H 0.402 0.598 38 H 0.265 0.735 39 H 0.035 0.965 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.142 0.858 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 -12.871 -4.915 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.276 3.724 4 O -0.333 6.333 5 C -0.201 4.201 6 C -0.068 4.068 7 C -0.181 4.181 8 C 0.093 3.907 9 N -0.299 5.299 10 C 0.290 3.710 11 O -0.370 6.370 12 C 0.273 3.727 13 O -0.406 6.406 14 N -0.314 5.314 15 C 0.166 3.834 16 H 0.073 0.927 17 C -0.576 4.576 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.168 4.168 26 C -0.196 4.196 27 C -0.158 4.158 28 C -0.055 4.055 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.265 0.735 37 H 0.237 0.763 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.160 0.840 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.182 -12.267 -4.935 23.297 hybrid contribution 0.537 0.416 0.789 1.042 sum -18.645 -11.850 -4.145 22.478 Atomic orbital electron populations 1.21595 0.93686 1.01767 1.03125 1.21992 0.98340 0.95858 1.04607 1.22400 0.87810 0.91169 0.71019 1.90527 1.58405 1.47784 1.36605 1.20472 0.94913 0.94362 1.10323 1.20943 0.92096 0.98688 0.95080 1.20679 0.96447 0.94907 1.06030 1.18102 0.83132 0.93868 0.95553 1.43261 1.06253 1.27975 1.52447 1.21138 0.90663 0.80451 0.78712 1.90757 1.59836 1.48929 1.37513 1.19522 0.86590 0.83863 0.82762 1.90753 1.58282 1.50824 1.40767 1.46489 1.13617 1.25134 1.46144 1.19051 0.73537 0.96368 0.94398 0.92660 1.21233 0.95679 1.35653 1.04988 0.91684 1.24874 0.96139 0.95761 0.96778 1.69888 1.03614 1.45268 1.33074 0.86348 0.78682 0.79600 0.82257 1.19613 1.20813 1.20773 1.21971 1.04324 0.97252 0.93274 1.21859 1.00258 0.99817 0.97704 1.20972 0.92490 0.99754 1.02620 1.21045 0.95155 0.96228 0.93043 0.92130 0.92063 0.92105 0.88309 0.88322 0.84659 0.84670 0.73544 0.76333 0.92449 0.94610 0.87770 0.92906 0.94687 0.95402 0.84006 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.20 37.16 0.34 -0.57 16 2 C -0.17 -0.99 5.02 -27.89 -0.14 -1.13 16 3 C 0.40 3.76 7.11 -30.83 -0.22 3.54 16 4 O -0.46 -5.82 15.96 5.55 0.09 -5.73 16 5 C -0.20 -1.94 5.87 -105.04 -0.62 -2.55 16 6 C -0.05 -0.38 9.42 -39.49 -0.37 -0.75 16 7 C -0.16 -1.40 9.90 -39.79 -0.39 -1.80 16 8 C 0.19 2.19 6.27 -83.78 -0.53 1.67 16 9 N -0.65 -8.14 5.30 -10.27 -0.05 -8.20 16 10 C 0.51 7.99 7.61 -11.62 -0.09 7.90 16 11 O -0.50 -8.55 14.15 5.49 0.08 -8.47 16 12 C 0.49 9.17 6.45 -11.63 -0.08 9.09 16 13 O -0.53 -10.59 13.62 5.49 0.07 -10.52 16 14 N -0.67 -13.45 5.01 -55.40 -0.28 -13.73 16 15 C 0.27 6.38 2.24 -69.09 -0.15 6.22 16 16 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 17 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 18 H 0.07 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 20 N -0.88 -23.65 11.29 55.43 0.63 -23.03 16 21 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 26 C -0.14 -2.87 8.52 37.16 0.32 -2.56 16 27 C -0.14 -1.71 8.58 -39.80 -0.34 -2.05 16 28 C -0.04 -0.41 9.55 -39.49 -0.38 -0.78 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.10 0.39 8.09 -51.92 -0.42 -0.03 16 34 H 0.14 0.58 7.03 -52.49 -0.37 0.21 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.43 4.57 8.29 -40.82 -0.34 4.23 16 37 H 0.40 7.65 8.01 -40.82 -0.33 7.33 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 41 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 42 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.14 1.92 6.41 -52.48 -0.34 1.59 16 45 H 0.14 1.51 7.64 -52.49 -0.40 1.11 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -29.92 376.70 -8.08 -38.00 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.09 Total: 10.10 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.19 Total: 0.78 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.29 Total: -44.95 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.24 Total: -24.72 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.92 -8.08 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627512966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.558 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds