Wall clock time and date at job start Tue Mar 31 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47137 * 2 1 4 4 O 1.21292 * 120.00383 * 0.02562 * 3 2 1 5 5 C 1.46862 * 120.00011 * 180.02562 * 3 2 1 6 6 C 1.40056 * 120.09403 * 359.72609 * 5 3 2 7 7 C 1.36601 * 119.90135 * 179.71620 * 6 5 3 8 8 C 1.39262 * 120.09807 * 0.56105 * 7 6 5 9 9 N 1.39158 * 119.90326 * 179.69599 * 8 7 6 10 10 C 1.34776 * 119.99460 * 213.65412 * 9 8 7 11 11 O 1.21357 * 120.00272 * 5.28235 * 10 9 8 12 12 C 1.49366 * 119.99836 * 185.28244 * 10 9 8 13 13 O 1.21357 * 119.99892 * 359.97438 * 12 10 9 14 14 N 1.34775 * 120.00434 * 180.02562 * 12 10 9 15 15 C 1.46494 * 120.00559 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.46875 * 325.00165 * 15 14 12 17 17 C 1.50697 * 109.47527 * 204.99963 * 15 14 12 18 18 H 1.08009 * 119.99844 * 0.02562 * 17 15 14 19 19 C 1.37872 * 120.00394 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99919 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00329 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46808 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46910 * 120.00180 * 21 19 17 24 24 H 1.48495 * 109.47162 * 240.00073 * 21 19 17 25 25 C 1.52995 * 109.47066 * 84.99891 * 15 14 12 26 26 C 1.53009 * 109.47332 * 295.00118 * 25 15 14 27 27 C 1.39254 * 120.18666 * 359.71295 * 8 7 6 28 28 C 1.36599 * 120.10292 * 0.02562 * 27 8 7 29 29 H 1.08999 * 109.46860 * 59.99807 * 1 2 3 30 30 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47112 * 300.00254 * 1 2 3 32 32 H 1.08999 * 109.46860 * 120.00193 * 2 1 3 33 33 H 1.09008 * 109.46982 * 240.00075 * 2 1 3 34 34 H 1.08000 * 120.04887 * 359.97438 * 6 5 3 35 35 H 1.08001 * 119.94983 * 180.25396 * 7 6 5 36 36 H 0.96993 * 120.00150 * 33.65666 * 9 8 7 37 37 H 0.97001 * 119.99351 * 359.97438 * 14 12 10 38 38 H 0.97001 * 120.00053 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47520 * 55.00146 * 25 15 14 40 40 H 1.09000 * 109.47311 * 175.00308 * 25 15 14 41 41 H 1.08996 * 109.46840 * 300.00444 * 26 25 15 42 42 H 1.09000 * 109.46768 * 59.99857 * 26 25 15 43 43 H 1.08996 * 109.47040 * 179.97438 * 26 25 15 44 44 H 1.08007 * 119.94970 * 179.97438 * 27 8 7 45 45 H 1.07996 * 120.05581 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3427 0.0005 5 6 3.4762 1.6891 -0.0006 6 6 4.3881 0.6261 0.0047 7 6 5.7303 0.8802 -0.0017 8 6 6.1923 2.1939 -0.0017 9 7 7.5605 2.4481 -0.0018 10 6 8.0455 3.5264 0.6451 11 8 7.3031 4.2217 1.3069 12 6 9.4969 3.8656 0.5474 13 8 10.2394 3.1699 -0.1141 14 7 9.9822 4.9435 1.1946 15 6 11.4057 5.2759 1.0993 16 1 11.9907 4.3575 1.0505 17 6 11.8184 6.0706 2.3113 18 1 11.0928 6.3044 3.0765 19 6 13.1223 6.4984 2.4441 20 7 14.0059 6.2133 1.5126 21 14 13.6337 7.4842 3.9462 22 1 12.4615 7.6698 4.8389 23 1 14.7013 6.7550 4.6768 24 1 14.1448 8.8107 3.5172 25 6 11.6524 6.1052 -0.1625 26 6 11.3515 5.2550 -1.3986 27 6 5.2892 3.2538 -0.0011 28 6 3.9453 3.0088 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 4.0306 -0.3931 0.0096 35 1 6.4341 0.0610 -0.0018 36 1 8.1650 1.8493 -0.4675 37 1 9.3887 5.4993 1.7236 38 1 14.9234 6.5140 1.6062 39 1 11.0015 6.9795 -0.1557 40 1 12.6933 6.4274 -0.1878 41 1 12.0024 4.3808 -1.4054 42 1 10.3105 4.9328 -1.3733 43 1 11.5268 5.8461 -2.2975 44 1 5.6518 4.2712 -0.0007 45 1 3.2456 3.8314 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627512966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:13 Heat of formation + Delta-G solvation = -106.605157 kcal Electronic energy + Delta-G solvation = -27401.781281 eV Core-core repulsion = 23383.442190 eV Total energy + Delta-G solvation = -4018.339091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25625 -41.05916 -40.17564 -38.98328 -37.23992 -36.06439 -34.33933 -33.88001 -32.84515 -32.15314 -31.25416 -29.21420 -27.09313 -25.67952 -24.87145 -23.94135 -23.18316 -21.93233 -21.24954 -20.59453 -20.13759 -18.86965 -18.19704 -17.96461 -17.37651 -17.12079 -17.00796 -16.52334 -16.38151 -16.04580 -15.75859 -15.26640 -15.19225 -14.95950 -14.63930 -14.52888 -14.31878 -13.91968 -13.86734 -13.69466 -13.49727 -13.22700 -13.09329 -12.97379 -12.78887 -12.71382 -12.59345 -12.24242 -12.16414 -12.12231 -11.97630 -11.62263 -11.57557 -11.11037 -10.78695 -10.62572 -10.55059 -10.13101 -9.86968 -9.34625 -8.20174 -6.36837 -0.57157 0.33823 0.37925 1.22372 1.42794 1.42981 1.46378 1.56859 2.12379 2.37946 2.69058 2.77613 3.06347 3.09911 3.44624 3.73533 3.86750 4.07970 4.24293 4.25362 4.33311 4.39040 4.46236 4.47498 4.53666 4.69853 4.81188 4.94990 5.00416 5.03777 5.05621 5.10538 5.12992 5.20671 5.23510 5.33414 5.35563 5.37462 5.39300 5.54926 5.64961 5.76320 5.80774 5.94017 6.10101 6.49203 6.58638 6.65295 6.74313 7.06993 7.34985 8.85097 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.002059 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.846484 B =13597.687608 C =14031.889991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.396 3.604 4 O -0.501 6.501 5 C -0.202 4.202 6 C -0.032 4.032 7 C -0.147 4.147 8 C 0.166 3.834 9 N -0.634 5.634 10 C 0.516 3.484 11 O -0.516 6.516 12 C 0.496 3.504 13 O -0.543 6.543 14 N -0.671 5.671 15 C 0.276 3.724 16 H 0.018 0.982 17 C -0.553 4.553 18 H 0.067 0.933 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.968 3.032 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.278 1.278 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.154 4.154 28 C -0.053 4.053 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.435 0.565 37 H 0.408 0.592 38 H 0.267 0.733 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.120 0.880 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -15.464 -4.842 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.277 3.723 4 O -0.379 6.379 5 C -0.204 4.204 6 C -0.050 4.050 7 C -0.167 4.167 8 C 0.071 3.929 9 N -0.282 5.282 10 C 0.299 3.701 11 O -0.390 6.390 12 C 0.276 3.724 13 O -0.422 6.422 14 N -0.320 5.320 15 C 0.174 3.826 16 H 0.036 0.964 17 C -0.591 4.591 18 H 0.085 0.915 19 C -0.179 4.179 20 N -0.546 5.546 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.163 4.163 26 C -0.184 4.184 27 C -0.175 4.175 28 C -0.072 4.072 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.276 0.724 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.138 0.862 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.448 -14.902 -4.883 25.769 hybrid contribution 0.824 1.126 0.717 1.569 sum -19.624 -13.776 -4.166 24.336 Atomic orbital electron populations 1.21622 0.94415 1.02776 1.01630 1.22087 0.97694 0.93159 1.07196 1.23028 0.87271 0.92643 0.69325 1.90525 1.59226 1.49486 1.38706 1.20745 0.95889 0.94163 1.09554 1.21420 0.91036 1.00145 0.92384 1.21064 0.97606 0.94145 1.03885 1.18310 0.82018 0.95087 0.97518 1.43040 1.07082 1.26669 1.51363 1.20409 0.88879 0.81465 0.79382 1.90764 1.59608 1.49921 1.38747 1.19931 0.87960 0.82858 0.81668 1.90738 1.59287 1.51035 1.41127 1.46254 1.12380 1.26216 1.47144 1.18657 0.75050 0.94474 0.94466 0.96422 1.21540 0.96073 1.35808 1.05669 0.91467 1.25662 0.96196 0.96683 0.99351 1.70009 1.03880 1.46126 1.34619 0.85360 0.78238 0.78132 0.79001 1.19038 1.20691 1.20375 1.21827 1.02766 0.97597 0.94113 1.21712 1.00143 0.99049 0.97476 1.20846 0.93235 0.99277 1.04095 1.21042 0.94604 0.97340 0.94244 0.93616 0.89695 0.93778 0.85552 0.85295 0.79895 0.81449 0.72442 0.75677 0.92357 0.94270 0.90269 0.94365 0.94107 0.93286 0.86224 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.16 -1.25 5.02 29.85 0.15 -1.10 16 3 C 0.40 6.76 7.11 27.94 0.20 6.96 16 4 O -0.50 -12.80 15.96 -3.07 -0.05 -12.85 16 5 C -0.20 -3.51 5.87 -20.14 -0.12 -3.63 16 6 C -0.03 -0.34 9.42 22.33 0.21 -0.13 16 7 C -0.15 -2.00 9.90 22.13 0.22 -1.78 16 8 C 0.17 3.58 6.27 38.47 0.24 3.82 16 9 N -0.63 -15.11 5.30 -304.78 -1.61 -16.73 16 10 C 0.52 16.24 7.61 87.24 0.66 16.90 16 11 O -0.52 -17.99 14.15 -3.27 -0.05 -18.04 16 12 C 0.50 18.57 6.45 87.24 0.56 19.14 16 13 O -0.54 -21.93 13.62 -3.27 -0.04 -21.97 16 14 N -0.67 -27.69 5.01 -447.54 -2.24 -29.94 16 15 C 0.28 13.53 2.24 44.24 0.10 13.63 16 16 H 0.02 1.01 7.58 -2.39 -0.02 0.99 16 17 C -0.55 -28.69 8.73 25.60 0.22 -28.47 16 18 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.02 1.15 5.29 84.65 0.45 1.60 16 20 N -0.91 -49.76 11.29 21.45 0.24 -49.52 16 21 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.12 -5.83 5.45 30.60 0.17 -5.67 16 26 C -0.13 -5.25 8.52 71.99 0.61 -4.63 16 27 C -0.15 -3.87 8.58 22.13 0.19 -3.68 16 28 C -0.05 -1.22 9.55 22.33 0.21 -1.01 16 29 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.13 0.35 8.08 -2.39 -0.02 0.33 16 33 H 0.13 0.28 8.09 -2.38 -0.02 0.26 16 34 H 0.18 0.27 7.03 -2.91 -0.02 0.25 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.43 8.59 8.29 -92.71 -0.77 7.82 16 37 H 0.41 15.86 8.01 -92.71 -0.74 15.12 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 4.15 5.95 -2.39 -0.01 4.14 16 41 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 42 H 0.04 1.61 5.65 -2.39 -0.01 1.60 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.12 3.47 6.41 -2.91 -0.02 3.45 16 45 H 0.13 3.02 7.64 -2.91 -0.02 2.99 16 Total: -1.00 -68.20 376.70 2.55 -65.66 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.47 Total: 28.79 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.74 Total: 11.09 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -3.62 Total: -96.18 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.14 Total: -52.86 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -68.20 2.55 -65.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627512966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.946 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds