Wall clock time and date at job start Tue Mar 31 2020 17:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08997 * 109.87641 * 55.53930 * 3 2 1 5 5 C 1.54323 * 109.88386 * 294.52236 * 3 2 1 6 6 C 1.55160 * 102.94418 * 218.23719 * 5 3 2 7 7 C 1.54906 * 101.58020 * 35.50025 * 6 5 3 8 8 N 1.47021 * 110.01360 * 176.63773 * 3 2 1 9 9 C 1.34784 * 125.64792 * 298.41155 * 8 3 2 10 10 O 1.21361 * 119.99560 * 4.60505 * 9 8 3 11 11 C 1.49349 * 119.99963 * 184.60691 * 9 8 3 12 12 O 1.21377 * 120.00250 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99602 * 180.02562 * 11 9 8 14 14 C 1.39726 * 119.99808 * 184.64198 * 13 11 9 15 15 C 1.39015 * 120.04213 * 144.84500 * 14 13 11 16 16 C 1.38136 * 120.06115 * 179.97438 * 15 14 13 17 17 C 1.38180 * 120.14635 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08001 * 0.02562 * 17 16 15 19 19 O 1.35756 * 120.03300 * 180.02562 * 18 17 16 20 20 C 1.34836 * 116.99847 * 5.75995 * 19 18 17 21 21 H 1.07997 * 119.99744 * 5.38829 * 20 19 18 22 22 C 1.38644 * 120.00212 * 185.38290 * 20 19 18 23 23 N 1.31557 * 120.00025 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00387 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46652 * 60.00163 * 24 22 20 26 26 H 1.48499 * 109.47645 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47079 * 300.00428 * 24 22 20 28 28 C 1.38759 * 119.94130 * 359.70373 * 18 17 16 29 29 H 1.09008 * 109.46754 * 305.01579 * 1 2 3 30 30 H 1.08995 * 109.47819 * 65.01644 * 1 2 3 31 31 H 1.08999 * 109.47025 * 185.02479 * 1 2 3 32 32 H 1.09005 * 109.47030 * 240.00464 * 2 1 3 33 33 H 1.08999 * 109.47614 * 120.00561 * 2 1 3 34 34 H 1.08997 * 110.71886 * 336.59585 * 5 3 2 35 35 H 1.09004 * 110.72245 * 99.69319 * 5 3 2 36 36 H 1.09000 * 111.00475 * 153.57634 * 6 5 3 37 37 H 1.08999 * 111.00135 * 277.39013 * 6 5 3 38 38 H 1.08996 * 110.36673 * 81.83261 * 7 6 5 39 39 H 1.09003 * 110.36541 * 204.04696 * 7 6 5 40 40 H 0.96996 * 119.99883 * 4.63692 * 13 11 9 41 41 H 1.08000 * 119.96916 * 0.02562 * 15 14 13 42 42 H 1.08003 * 119.92957 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.96502 * 180.02562 * 17 16 15 44 44 H 0.97003 * 120.00567 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.07519 * 180.29587 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6167 1.9852 0.8452 5 6 1.6470 2.1381 -1.3203 6 6 2.8917 3.0081 -1.6386 7 6 4.0419 2.1025 -1.1321 8 7 3.5079 1.4572 0.0810 9 6 4.2435 0.9629 1.0965 10 8 3.7005 0.3769 2.0100 11 6 5.7269 1.1363 1.0974 12 8 6.2701 1.7220 0.1835 13 7 6.4626 0.6415 2.1126 14 6 7.8371 0.8869 2.1636 15 6 8.4665 1.0693 3.3896 16 6 9.8255 1.3114 3.4406 17 6 10.5637 1.3726 2.2741 18 6 9.9409 1.1913 1.0456 19 8 10.6671 1.2511 -0.0998 20 6 12.0040 1.3702 0.0286 21 1 12.4585 1.3263 1.0073 22 6 12.7953 1.5490 -1.0958 23 7 12.2416 1.6030 -2.2879 24 14 14.6474 1.7148 -0.9179 25 1 15.1955 0.4883 -0.2848 26 1 15.2595 1.8948 -2.2588 27 1 14.9597 2.8922 -0.0684 28 6 8.5769 0.9423 0.9907 29 1 -0.3633 0.5897 0.8417 30 1 -0.3634 0.4340 -0.9314 31 1 -0.3633 -1.0237 0.0900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.4784 1.4036 -2.1078 35 1 0.7635 2.7609 -1.1801 36 1 2.9790 3.1881 -2.7101 37 1 2.8624 3.9482 -1.0878 38 1 4.2922 1.3522 -1.8821 39 1 4.9188 2.7028 -0.8897 40 1 6.0377 0.1152 2.8078 41 1 7.8926 1.0207 4.3032 42 1 10.3124 1.4523 4.3943 43 1 11.6262 1.5617 2.3173 44 1 12.7952 1.7277 -3.0747 45 1 8.0914 0.7963 0.0372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727948931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:36 Heat of formation + Delta-G solvation = -60.609514 kcal Electronic energy + Delta-G solvation = -28102.392664 eV Core-core repulsion = 24086.048094 eV Total energy + Delta-G solvation = -4016.344570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07790 -39.68414 -38.57005 -37.72459 -36.61170 -34.29255 -33.67350 -32.27073 -31.80172 -29.66266 -28.66565 -28.12647 -25.80224 -25.22608 -23.60845 -22.52608 -22.01483 -21.33059 -20.66377 -19.57687 -18.34828 -17.74274 -17.16589 -17.00071 -16.29636 -15.70167 -15.34699 -15.10913 -14.98262 -14.63067 -14.41319 -14.21743 -13.94278 -13.69210 -13.67172 -13.50409 -13.30157 -12.89767 -12.65549 -12.55916 -12.37784 -11.95103 -11.88075 -11.71557 -11.55511 -11.51118 -11.22857 -11.11408 -11.00098 -10.96684 -10.80840 -10.68620 -10.49044 -9.85593 -9.58515 -9.18300 -8.90912 -8.83119 -7.79099 -7.23062 -6.44106 -4.03380 1.28368 2.06878 2.28026 2.33288 3.13633 3.14177 3.17637 3.24053 3.43319 3.96417 4.18435 4.30333 4.43503 4.50133 4.56652 4.85764 4.88690 5.00439 5.10478 5.10989 5.21046 5.27522 5.37918 5.46398 5.59366 5.62957 5.65269 5.74426 5.75238 5.81285 5.85660 5.89385 5.97867 6.05985 6.13276 6.19258 6.31899 6.56720 6.73371 6.97165 7.02726 7.07739 7.30443 7.37909 7.43742 7.67583 7.76358 8.00093 8.09460 9.00655 9.70916 10.73567 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002604 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.082521 B =10751.339055 C =11961.144643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.088 3.912 8 N -0.587 5.587 9 C 0.527 3.473 10 O -0.523 6.523 11 C 0.501 3.499 12 O -0.486 6.486 13 N -0.637 5.637 14 C 0.168 3.832 15 C -0.229 4.229 16 C -0.058 4.058 17 C -0.241 4.241 18 C 0.166 3.834 19 O -0.172 6.172 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.184 4.184 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.271 0.729 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 0.112 4.166 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.034 4.034 8 N -0.321 5.321 9 C 0.310 3.690 10 O -0.399 6.399 11 C 0.283 3.717 12 O -0.359 6.359 13 N -0.283 5.283 14 C 0.075 3.925 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.261 4.261 18 C 0.111 3.889 19 O -0.075 6.075 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.081 0.919 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.862 0.226 3.541 20.176 hybrid contribution 0.749 -0.141 0.495 0.908 sum -19.113 0.085 4.035 19.535 Atomic orbital electron populations 1.21708 0.94948 1.01979 1.01801 1.21929 0.96292 0.95930 1.03524 1.21785 0.79027 0.97037 0.98807 0.90263 1.22756 0.98506 0.99145 0.96160 1.22848 0.93948 0.98342 1.02268 1.22818 0.98325 0.96573 0.85694 1.48335 1.07077 1.57126 1.19550 1.19746 0.87581 0.79785 0.81932 1.90732 1.72979 1.40773 1.35458 1.20057 0.87668 0.80572 0.83437 1.90790 1.72224 1.39262 1.33661 1.42997 1.07007 1.51823 1.26508 1.17176 0.80506 1.00735 0.94057 1.20308 0.95462 1.14207 0.95038 1.20519 0.92877 0.97016 0.97285 1.21222 1.01204 1.11590 0.92045 1.19117 0.90723 0.92128 0.86960 1.84007 1.19862 1.78135 1.25488 1.21292 0.78379 1.51952 0.95214 0.89039 1.25300 1.00481 0.96440 0.94278 1.70039 1.36372 1.45129 0.97913 0.85779 0.80499 0.79189 0.77945 1.19481 1.20287 1.19477 1.20142 0.91634 1.10713 0.98038 0.92586 0.92572 0.92443 0.91674 0.90200 0.90177 0.89867 0.89414 0.90459 0.90682 0.87166 0.74575 0.87097 0.86831 0.85323 0.91935 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.66 37.16 0.36 -0.65 16 2 C -0.14 -1.28 5.39 -26.73 -0.14 -1.42 16 3 C 0.14 1.29 2.94 -66.95 -0.20 1.09 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -0.88 5.61 -24.89 -0.14 -1.02 16 6 C -0.14 -1.06 7.09 -24.58 -0.17 -1.24 16 7 C 0.09 0.98 6.22 -2.53 -0.02 0.96 16 8 N -0.59 -7.12 3.07 -163.56 -0.50 -7.62 16 9 C 0.53 7.58 7.73 -11.63 -0.09 7.49 16 10 O -0.52 -7.98 15.31 5.49 0.08 -7.89 16 11 C 0.50 8.19 7.69 -11.63 -0.09 8.10 16 12 O -0.49 -9.14 11.16 5.47 0.06 -9.08 16 13 N -0.64 -10.10 5.32 -10.31 -0.05 -10.16 16 14 C 0.17 3.17 6.29 -83.77 -0.53 2.64 16 15 C -0.23 -3.96 9.97 -39.33 -0.39 -4.35 16 16 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 17 C -0.24 -5.22 9.13 -39.35 -0.36 -5.58 16 18 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 19 O -0.17 -4.99 9.76 0.01 0.00 -4.99 16 20 C -0.39 -10.99 9.44 30.88 0.29 -10.70 16 21 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 24 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.18 -4.15 8.64 -39.19 -0.34 -4.49 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.32 7.58 -51.93 -0.39 -0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.60 8.06 -51.93 -0.42 0.19 16 33 H 0.08 0.92 6.62 -51.93 -0.34 0.58 16 34 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 1.48 5.89 -51.93 -0.31 1.17 16 40 H 0.42 5.51 8.30 -40.82 -0.34 5.17 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.13 2.76 5.70 -52.49 -0.30 2.46 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 3.17 6.25 -52.49 -0.33 2.84 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -32.56 370.02 -7.72 -40.28 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.05 Total: 8.82 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.57 Total: -5.77 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.20 Total: -42.40 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.15 Total: -21.96 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.56 -7.72 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727948931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.329 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds