Wall clock time and date at job start Tue Mar 31 2020 17:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08997 * 109.87641 * 55.53930 * 3 2 1 5 5 C 1.54323 * 109.88386 * 294.52236 * 3 2 1 6 6 C 1.55160 * 102.94418 * 218.23719 * 5 3 2 7 7 C 1.54906 * 101.58020 * 35.50025 * 6 5 3 8 8 N 1.47021 * 110.01360 * 176.63773 * 3 2 1 9 9 C 1.34784 * 125.64792 * 298.41155 * 8 3 2 10 10 O 1.21361 * 119.99560 * 4.60505 * 9 8 3 11 11 C 1.49349 * 119.99963 * 184.60691 * 9 8 3 12 12 O 1.21377 * 120.00250 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99602 * 180.02562 * 11 9 8 14 14 C 1.39726 * 119.99808 * 184.64198 * 13 11 9 15 15 C 1.39015 * 120.04213 * 144.84500 * 14 13 11 16 16 C 1.38136 * 120.06115 * 179.97438 * 15 14 13 17 17 C 1.38180 * 120.14635 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08001 * 0.02562 * 17 16 15 19 19 O 1.35756 * 120.03300 * 180.02562 * 18 17 16 20 20 C 1.34836 * 116.99847 * 5.75995 * 19 18 17 21 21 H 1.07997 * 119.99744 * 5.38829 * 20 19 18 22 22 C 1.38644 * 120.00212 * 185.38290 * 20 19 18 23 23 N 1.31557 * 120.00025 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00387 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46652 * 60.00163 * 24 22 20 26 26 H 1.48499 * 109.47645 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47079 * 300.00428 * 24 22 20 28 28 C 1.38759 * 119.94130 * 359.70373 * 18 17 16 29 29 H 1.09008 * 109.46754 * 305.01579 * 1 2 3 30 30 H 1.08995 * 109.47819 * 65.01644 * 1 2 3 31 31 H 1.08999 * 109.47025 * 185.02479 * 1 2 3 32 32 H 1.09005 * 109.47030 * 240.00464 * 2 1 3 33 33 H 1.08999 * 109.47614 * 120.00561 * 2 1 3 34 34 H 1.08997 * 110.71886 * 336.59585 * 5 3 2 35 35 H 1.09004 * 110.72245 * 99.69319 * 5 3 2 36 36 H 1.09000 * 111.00475 * 153.57634 * 6 5 3 37 37 H 1.08999 * 111.00135 * 277.39013 * 6 5 3 38 38 H 1.08996 * 110.36673 * 81.83261 * 7 6 5 39 39 H 1.09003 * 110.36541 * 204.04696 * 7 6 5 40 40 H 0.96996 * 119.99883 * 4.63692 * 13 11 9 41 41 H 1.08000 * 119.96916 * 0.02562 * 15 14 13 42 42 H 1.08003 * 119.92957 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.96502 * 180.02562 * 17 16 15 44 44 H 0.97003 * 120.00567 * 180.02562 * 23 22 20 45 45 H 1.07996 * 120.07519 * 180.29587 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6167 1.9852 0.8452 5 6 1.6470 2.1381 -1.3203 6 6 2.8917 3.0081 -1.6386 7 6 4.0419 2.1025 -1.1321 8 7 3.5079 1.4572 0.0810 9 6 4.2435 0.9629 1.0965 10 8 3.7005 0.3769 2.0100 11 6 5.7269 1.1363 1.0974 12 8 6.2701 1.7220 0.1835 13 7 6.4626 0.6415 2.1126 14 6 7.8371 0.8869 2.1636 15 6 8.4665 1.0693 3.3896 16 6 9.8255 1.3114 3.4406 17 6 10.5637 1.3726 2.2741 18 6 9.9409 1.1913 1.0456 19 8 10.6671 1.2511 -0.0998 20 6 12.0040 1.3702 0.0286 21 1 12.4585 1.3263 1.0073 22 6 12.7953 1.5490 -1.0958 23 7 12.2416 1.6030 -2.2879 24 14 14.6474 1.7148 -0.9179 25 1 15.1955 0.4883 -0.2848 26 1 15.2595 1.8948 -2.2588 27 1 14.9597 2.8922 -0.0684 28 6 8.5769 0.9423 0.9907 29 1 -0.3633 0.5897 0.8417 30 1 -0.3634 0.4340 -0.9314 31 1 -0.3633 -1.0237 0.0900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.4784 1.4036 -2.1078 35 1 0.7635 2.7609 -1.1801 36 1 2.9790 3.1881 -2.7101 37 1 2.8624 3.9482 -1.0878 38 1 4.2922 1.3522 -1.8821 39 1 4.9188 2.7028 -0.8897 40 1 6.0377 0.1152 2.8078 41 1 7.8926 1.0207 4.3032 42 1 10.3124 1.4523 4.3943 43 1 11.6262 1.5617 2.3173 44 1 12.7952 1.7277 -3.0747 45 1 8.0914 0.7963 0.0372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727948931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:35 Heat of formation + Delta-G solvation = -82.242274 kcal Electronic energy + Delta-G solvation = -28103.330731 eV Core-core repulsion = 24086.048094 eV Total energy + Delta-G solvation = -4017.282637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.31139 -41.03481 -40.13240 -38.80518 -38.28912 -35.74924 -34.48548 -34.26320 -32.66465 -31.32455 -30.28630 -28.86932 -27.42891 -26.75743 -24.64509 -23.66196 -23.25032 -22.72500 -21.76639 -20.71222 -20.02710 -19.21430 -18.60518 -18.27319 -17.42636 -17.11328 -16.81208 -16.69878 -16.05929 -15.99938 -15.78397 -15.56379 -15.47381 -15.04997 -14.86503 -14.43654 -14.41357 -14.29175 -14.05107 -13.60399 -13.47201 -13.23849 -13.12084 -13.00977 -12.70313 -12.65844 -12.63241 -12.38874 -12.16055 -12.15593 -12.02849 -11.63161 -11.45918 -11.43874 -11.29699 -10.76785 -10.58194 -9.92489 -9.43363 -8.95460 -8.46425 -6.15885 -0.06084 0.58104 0.67836 1.07373 1.35824 1.47207 1.52748 1.95743 2.16384 2.29827 2.79465 3.04897 3.16030 3.52145 3.55418 3.62843 3.83113 4.10085 4.12298 4.19275 4.30773 4.33442 4.36668 4.45113 4.51674 4.56834 4.67584 4.72630 4.83882 4.88592 4.95385 4.97199 5.06787 5.09246 5.10132 5.14799 5.22584 5.28668 5.31213 5.34878 5.44663 5.59456 5.69947 5.91297 6.01997 6.08064 6.12958 6.54523 6.78727 6.97215 7.77954 8.76852 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002604 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.082521 B =10751.339055 C =11961.144643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.128 3.872 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.127 4.127 7 C 0.081 3.919 8 N -0.583 5.583 9 C 0.528 3.472 10 O -0.533 6.533 11 C 0.498 3.502 12 O -0.516 6.516 13 N -0.628 5.628 14 C 0.174 3.826 15 C -0.200 4.200 16 C -0.047 4.047 17 C -0.248 4.248 18 C 0.128 3.872 19 O -0.231 6.231 20 C -0.414 4.414 21 H 0.107 0.893 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.255 1.255 28 C -0.205 4.205 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.433 0.567 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.127 0.873 44 H 0.273 0.727 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.613 0.509 6.751 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.165 4.165 7 C -0.041 4.041 8 N -0.315 5.315 9 C 0.310 3.690 10 O -0.411 6.411 11 C 0.280 3.720 12 O -0.390 6.390 13 N -0.276 5.276 14 C 0.080 3.920 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.268 4.268 18 C 0.077 3.923 19 O -0.137 6.137 20 C -0.490 4.490 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.179 1.179 28 C -0.227 4.227 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.273 0.727 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.145 0.855 44 H 0.082 0.918 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.564 0.611 6.180 22.440 hybrid contribution 0.964 -0.298 -0.101 1.014 sum -20.600 0.313 6.079 21.481 Atomic orbital electron populations 1.21678 0.92775 1.02461 1.02945 1.21880 0.98112 0.95311 1.02034 1.22102 0.76961 0.97678 1.00615 0.90011 1.22787 0.98744 0.99198 0.94679 1.22838 0.92652 0.97742 1.03251 1.22870 0.99080 0.96828 0.85333 1.48505 1.08466 1.55717 1.18849 1.19309 0.86506 0.80447 0.82698 1.90725 1.72699 1.41623 1.36065 1.20590 0.88826 0.79777 0.82801 1.90807 1.73103 1.40414 1.34716 1.42937 1.05818 1.51841 1.26971 1.17303 0.81652 0.99450 0.93574 1.20903 0.95506 1.09829 0.95799 1.21037 0.93057 0.94678 0.97746 1.21392 1.01535 1.11641 0.92195 1.19621 0.91498 0.93790 0.87413 1.83971 1.20600 1.81205 1.27938 1.21851 0.78703 1.52206 0.96236 0.87610 1.26672 1.06252 0.95739 0.93561 1.70206 1.38630 1.48143 0.99036 0.84611 0.73061 0.79993 0.78300 1.17969 1.19812 1.17919 1.20141 0.91434 1.12447 0.98663 0.92226 0.90728 0.92232 0.92003 0.92873 0.89091 0.87163 0.87624 0.90084 0.91048 0.89892 0.72699 0.82187 0.82008 0.85522 0.91844 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.66 71.98 0.70 -0.91 16 2 C -0.13 -2.33 5.39 30.59 0.16 -2.16 16 3 C 0.13 2.22 2.94 45.34 0.13 2.35 16 4 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.12 -1.27 5.61 31.78 0.18 -1.09 16 6 C -0.13 -1.77 7.09 31.99 0.23 -1.54 16 7 C 0.08 1.84 6.22 86.85 0.54 2.38 16 8 N -0.58 -14.05 3.07 -789.74 -2.42 -16.48 16 9 C 0.53 15.28 7.73 87.24 0.67 15.95 16 10 O -0.53 -15.99 15.31 -3.28 -0.05 -16.04 16 11 C 0.50 16.64 7.69 87.24 0.67 17.31 16 12 O -0.52 -20.61 11.16 -3.33 -0.04 -20.65 16 13 N -0.63 -19.46 5.32 -304.88 -1.62 -21.08 16 14 C 0.17 6.42 6.29 38.20 0.24 6.66 16 15 C -0.20 -6.13 9.97 22.43 0.22 -5.91 16 16 C -0.05 -1.53 10.03 22.23 0.22 -1.30 16 17 C -0.25 -10.71 9.13 22.42 0.20 -10.50 16 18 C 0.13 6.66 6.64 22.56 0.15 6.81 16 19 O -0.23 -14.42 9.76 -22.86 -0.22 -14.65 16 20 C -0.41 -24.45 9.44 67.92 0.64 -23.81 16 21 H 0.11 5.62 5.29 -2.91 -0.02 5.60 16 22 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 23 N -0.92 -57.92 13.67 21.61 0.30 -57.62 16 24 Si 1.02 43.10 29.55 68.60 2.03 45.12 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 28 C -0.21 -9.73 8.64 22.52 0.19 -9.53 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.60 7.58 -2.39 -0.02 0.58 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 1.09 8.06 -2.38 -0.02 1.07 16 33 H 0.05 1.21 6.62 -2.39 -0.02 1.19 16 34 H 0.09 0.85 7.79 -2.39 -0.02 0.83 16 35 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.38 5.89 -2.39 -0.01 2.36 16 40 H 0.43 10.61 8.30 -92.71 -0.77 9.84 16 41 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.13 5.44 5.70 -2.91 -0.02 5.42 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.11 5.56 6.25 -2.91 -0.02 5.54 16 Total: -1.00 -78.84 370.02 3.86 -74.98 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.26 Total: 32.69 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.63 Total: -6.28 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -3.75 Total: -95.18 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.31 Total: -51.34 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.84 3.86 -74.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727948931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.263 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds