Wall clock time and date at job start Tue Mar 31 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35626 * 117.00228 * 2 1 4 4 C 1.39202 * 119.72704 * 359.97438 * 3 2 1 5 5 C 1.36671 * 120.16471 * 180.02562 * 4 3 2 6 6 C 1.39711 * 119.90068 * 0.02562 * 5 4 3 7 7 C 1.40664 * 120.39864 * 359.97438 * 6 5 4 8 8 C 1.38583 * 118.98197 * 359.97438 * 7 6 5 9 9 N 1.39302 * 109.58688 * 179.97438 * 7 6 5 10 10 C 1.46492 * 124.32222 * 179.97438 * 9 7 6 11 11 N 1.46910 * 109.46911 * 100.56550 * 10 9 7 12 12 C 1.46899 * 111.00289 * 275.97750 * 11 10 9 13 13 C 1.50697 * 109.47065 * 169.99806 * 12 11 10 14 14 H 1.08002 * 119.99813 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99858 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99822 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99983 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47435 * 89.99907 * 17 15 13 19 19 H 1.48505 * 109.46957 * 209.99756 * 17 15 13 20 20 H 1.48498 * 109.47161 * 329.99630 * 17 15 13 21 21 C 1.46896 * 110.99659 * 152.01812 * 11 10 9 22 22 C 1.52996 * 109.47566 * 294.53202 * 21 11 10 23 23 C 1.52998 * 109.47034 * 54.53962 * 21 11 10 24 24 C 1.34432 * 111.35942 * 0.26703 * 9 7 6 25 25 O 1.21313 * 126.22161 * 179.73122 * 24 9 7 26 26 C 1.47141 * 133.00119 * 179.97438 * 6 5 4 27 27 O 1.21402 * 127.55680 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47141 * 59.99930 * 1 2 3 29 29 H 1.09004 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47122 * 300.00506 * 1 2 3 31 31 H 1.07997 * 119.91195 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.04884 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.99175 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47461 * 340.57398 * 10 9 7 35 35 H 1.08999 * 109.47797 * 220.56640 * 10 9 7 36 36 H 1.08999 * 109.47205 * 289.99849 * 12 11 10 37 37 H 1.08997 * 109.46932 * 49.99554 * 12 11 10 38 38 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.46748 * 174.53035 * 21 11 10 40 40 H 1.09006 * 109.47093 * 66.11069 * 22 21 11 41 41 H 1.09002 * 109.47137 * 186.10972 * 22 21 11 42 42 H 1.08993 * 109.47232 * 306.10799 * 22 21 11 43 43 H 1.08993 * 109.47777 * 61.81615 * 23 21 11 44 44 H 1.09007 * 109.47202 * 181.82493 * 23 21 11 45 45 H 1.09000 * 109.47025 * 301.81271 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2811 2.3723 -0.0005 5 6 1.8923 3.5947 -0.0011 6 6 3.2870 3.6760 -0.0016 7 6 4.0682 2.5062 -0.0011 8 6 3.4329 1.2745 0.0005 9 7 5.4190 2.8467 -0.0024 10 6 6.5156 1.8754 -0.0017 11 7 7.0497 1.7390 -1.3635 12 6 6.2570 0.7818 -2.1465 13 6 6.6741 0.8488 -3.5931 14 1 7.4502 1.5343 -3.9000 15 6 6.0650 0.0351 -4.5246 16 7 6.4294 0.0932 -5.7869 17 14 4.7222 -1.1500 -3.9937 18 1 3.4022 -0.4759 -4.0857 19 1 4.7330 -2.3403 -4.8815 20 1 4.9637 -1.5759 -2.5918 21 6 8.4665 1.3519 -1.3368 22 6 9.2926 2.4824 -0.7200 23 6 8.6327 0.0828 -0.4988 24 6 5.5877 4.1804 0.0021 25 8 6.6486 4.7687 0.0068 26 6 4.2262 4.8087 -0.0027 27 8 3.9577 5.9926 -0.0030 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2030 2.3090 -0.0005 32 1 1.2980 4.4965 -0.0019 33 1 4.0168 0.3659 0.0006 34 1 6.1453 0.9095 0.3416 35 1 7.3057 2.2198 0.6656 36 1 6.4248 -0.2258 -1.7663 37 1 5.1992 1.0307 -2.0615 38 1 6.0011 -0.4796 -6.4422 39 1 8.8108 1.1634 -2.3538 40 1 9.0233 2.5981 0.3299 41 1 10.3530 2.2422 -0.7987 42 1 9.0903 3.4121 -1.2516 43 1 8.0702 -0.7310 -0.9562 44 1 9.6881 -0.1863 -0.4521 45 1 8.2586 0.2614 0.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:56 Heat of formation + Delta-G solvation = -33.046328 kcal Electronic energy + Delta-G solvation = -29732.369379 eV Core-core repulsion = 25717.220038 eV Total energy + Delta-G solvation = -4015.149341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83583 -39.97732 -38.58655 -37.81762 -37.57910 -35.30274 -32.79992 -31.72837 -31.08562 -30.06512 -28.00392 -27.66210 -26.74004 -26.22271 -24.21054 -22.66888 -21.98746 -21.59929 -20.36549 -19.05686 -18.27107 -17.41109 -16.99201 -16.80810 -16.32239 -16.00209 -15.98740 -15.76578 -15.22053 -14.74906 -14.67959 -14.20487 -13.93540 -13.68565 -13.67856 -13.30429 -13.23739 -13.12837 -12.97720 -12.62091 -12.47311 -12.39837 -11.90518 -11.80518 -11.62390 -11.58944 -11.18887 -11.10529 -10.81645 -10.71344 -10.62377 -10.50416 -10.02347 -9.95645 -9.46451 -9.31999 -8.69099 -8.60402 -8.17841 -7.62150 -6.10756 -4.08709 0.10989 1.11093 1.71836 2.37088 2.93339 3.13237 3.22892 3.29742 3.31182 3.52784 3.66473 4.35232 4.38123 4.50535 4.56958 4.68872 4.78448 4.87899 4.94927 5.00421 5.15907 5.20765 5.21518 5.35554 5.39711 5.45454 5.61853 5.74626 5.76352 5.89324 5.94989 6.06738 6.07434 6.14712 6.17673 6.31306 6.36821 6.58280 6.66657 6.77570 6.86835 6.92275 7.00308 7.08168 7.46896 7.71781 7.74874 7.91076 8.55684 8.97855 9.49868 11.02127 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008169 B = 0.006249 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.596970 B = 4479.984577 C = 6584.400378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.206 3.794 4 C -0.253 4.253 5 C 0.037 3.963 6 C -0.285 4.285 7 C 0.254 3.746 8 C -0.190 4.190 9 N -0.531 5.531 10 C 0.268 3.732 11 N -0.532 5.532 12 C 0.159 3.841 13 C -0.509 4.509 14 H 0.081 0.919 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.870 3.130 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.088 3.912 22 C -0.142 4.142 23 C -0.184 4.184 24 C 0.501 3.499 25 O -0.439 6.439 26 C 0.398 3.602 27 O -0.389 6.389 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.099 0.901 36 H -0.003 1.003 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -0.274 15.876 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.158 3.842 4 C -0.272 4.272 5 C 0.018 3.982 6 C -0.290 4.290 7 C 0.155 3.845 8 C -0.211 4.211 9 N -0.255 5.255 10 C 0.058 3.942 11 N -0.257 5.257 12 C 0.033 3.967 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.697 3.303 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.021 4.021 22 C -0.200 4.200 23 C -0.242 4.242 24 C 0.284 3.716 25 O -0.308 6.308 26 C 0.269 3.731 27 O -0.260 6.260 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.014 0.986 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.523 0.875 15.455 18.175 hybrid contribution -0.968 -1.641 0.263 1.924 sum -10.492 -0.766 15.718 18.913 Atomic orbital electron populations 1.23189 0.77537 1.04454 1.01866 1.86051 1.22085 1.26671 1.87060 1.18852 0.91208 0.84420 0.89685 1.20857 1.00474 0.91610 1.14295 1.20207 0.91357 0.97759 0.88855 1.20349 0.94636 0.93902 1.20093 1.17979 0.83172 0.93562 0.89811 1.19352 0.91652 0.96533 1.13603 1.45903 1.04781 1.07421 1.67377 1.22204 0.87799 0.90191 0.94042 1.61774 1.02968 1.51235 1.09704 1.20315 0.92977 0.88673 0.94701 1.20952 1.22066 1.22350 0.89363 0.90054 1.24871 0.96609 0.96796 0.94787 1.69887 1.42570 1.39683 1.01396 0.86947 0.83149 0.81279 0.78957 1.20056 1.21168 1.19136 1.21614 0.86923 0.92182 1.01335 1.21888 0.98628 0.99542 0.99924 1.22509 1.02077 1.00241 0.99417 1.20967 0.91219 0.82530 0.76854 1.90762 1.30722 1.66920 1.42378 1.22238 0.89765 0.88235 0.72857 1.90570 1.84085 1.17821 1.33484 0.91984 0.87876 0.92113 0.84261 0.84329 0.84047 0.91612 0.88271 0.98553 0.95838 0.92617 0.87656 0.93691 0.92760 0.91560 0.91829 0.92364 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.80 101.05 0.99 1.16 16 2 O -0.31 -3.60 10.47 -18.58 -0.19 -3.79 16 3 C 0.21 2.59 6.69 -38.95 -0.26 2.33 16 4 C -0.25 -2.63 8.97 -39.79 -0.36 -2.99 16 5 C 0.04 0.42 10.05 -39.60 -0.40 0.02 16 6 C -0.29 -4.10 6.33 -104.82 -0.66 -4.76 16 7 C 0.25 3.88 6.28 -83.42 -0.52 3.35 16 8 C -0.19 -2.72 9.00 -39.18 -0.35 -3.08 16 9 N -0.53 -8.81 2.98 -116.84 -0.35 -9.16 16 10 C 0.27 4.36 4.05 -63.31 -0.26 4.11 16 11 N -0.53 -10.53 4.55 -231.97 -1.05 -11.59 16 12 C 0.16 3.61 3.50 -4.98 -0.02 3.60 16 13 C -0.51 -13.99 8.93 -34.44 -0.31 -14.30 16 14 H 0.08 2.47 7.42 -52.49 -0.39 2.08 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 C 0.09 1.57 2.77 -67.72 -0.19 1.38 16 22 C -0.14 -2.23 9.04 37.16 0.34 -1.89 16 23 C -0.18 -2.78 8.62 37.16 0.32 -2.45 16 24 C 0.50 8.89 8.17 -11.50 -0.09 8.79 16 25 O -0.44 -8.74 17.81 5.53 0.10 -8.64 16 26 C 0.40 6.50 7.95 -31.06 -0.25 6.26 16 27 O -0.39 -6.86 18.03 5.45 0.10 -6.76 16 28 H 0.06 0.39 7.64 -51.93 -0.40 0.00 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.31 7.64 -51.93 -0.40 -0.09 16 31 H 0.14 1.00 6.25 -52.49 -0.33 0.67 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 2.04 7.51 -52.48 -0.39 1.64 16 34 H 0.07 0.97 6.82 -51.93 -0.35 0.61 16 35 H 0.10 1.48 5.59 -51.93 -0.29 1.19 16 36 H 0.00 -0.07 5.46 -51.93 -0.28 -0.35 16 37 H 0.02 0.55 6.32 -51.93 -0.33 0.22 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.11 2.19 6.66 -51.93 -0.35 1.84 16 40 H 0.04 0.65 6.43 -51.93 -0.33 0.31 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.06 6.63 -51.93 -0.34 0.72 16 44 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.04 0.59 6.69 -51.93 -0.35 0.25 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -33.00 367.66 -7.69 -40.69 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.81 Total: 0.28 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.12 Total: 3.45 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.63 Total: -47.01 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.00 Total: -19.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.00 -7.69 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.644 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds