Wall clock time and date at job start Tue Mar 31 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35626 * 117.00228 * 2 1 4 4 C 1.39202 * 119.72704 * 359.97438 * 3 2 1 5 5 C 1.36671 * 120.16471 * 180.02562 * 4 3 2 6 6 C 1.39711 * 119.90068 * 0.02562 * 5 4 3 7 7 C 1.40664 * 120.39864 * 359.97438 * 6 5 4 8 8 C 1.38583 * 118.98197 * 359.97438 * 7 6 5 9 9 N 1.39302 * 109.58688 * 179.97438 * 7 6 5 10 10 C 1.46492 * 124.32222 * 179.97438 * 9 7 6 11 11 N 1.46910 * 109.46911 * 100.56550 * 10 9 7 12 12 C 1.46899 * 111.00289 * 275.97750 * 11 10 9 13 13 C 1.50697 * 109.47065 * 169.99806 * 12 11 10 14 14 H 1.08002 * 119.99813 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99858 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99822 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99983 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47435 * 89.99907 * 17 15 13 19 19 H 1.48505 * 109.46957 * 209.99756 * 17 15 13 20 20 H 1.48498 * 109.47161 * 329.99630 * 17 15 13 21 21 C 1.46896 * 110.99659 * 152.01812 * 11 10 9 22 22 C 1.52996 * 109.47566 * 294.53202 * 21 11 10 23 23 C 1.52998 * 109.47034 * 54.53962 * 21 11 10 24 24 C 1.34432 * 111.35942 * 0.26703 * 9 7 6 25 25 O 1.21313 * 126.22161 * 179.73122 * 24 9 7 26 26 C 1.47141 * 133.00119 * 179.97438 * 6 5 4 27 27 O 1.21402 * 127.55680 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47141 * 59.99930 * 1 2 3 29 29 H 1.09004 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47122 * 300.00506 * 1 2 3 31 31 H 1.07997 * 119.91195 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.04884 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.99175 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47461 * 340.57398 * 10 9 7 35 35 H 1.08999 * 109.47797 * 220.56640 * 10 9 7 36 36 H 1.08999 * 109.47205 * 289.99849 * 12 11 10 37 37 H 1.08997 * 109.46932 * 49.99554 * 12 11 10 38 38 H 0.97001 * 119.99994 * 179.97438 * 16 15 13 39 39 H 1.09006 * 109.46748 * 174.53035 * 21 11 10 40 40 H 1.09006 * 109.47093 * 66.11069 * 22 21 11 41 41 H 1.09002 * 109.47137 * 186.10972 * 22 21 11 42 42 H 1.08993 * 109.47232 * 306.10799 * 22 21 11 43 43 H 1.08993 * 109.47777 * 61.81615 * 23 21 11 44 44 H 1.09007 * 109.47202 * 181.82493 * 23 21 11 45 45 H 1.09000 * 109.47025 * 301.81271 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2811 2.3723 -0.0005 5 6 1.8923 3.5947 -0.0011 6 6 3.2870 3.6760 -0.0016 7 6 4.0682 2.5062 -0.0011 8 6 3.4329 1.2745 0.0005 9 7 5.4190 2.8467 -0.0024 10 6 6.5156 1.8754 -0.0017 11 7 7.0497 1.7390 -1.3635 12 6 6.2570 0.7818 -2.1465 13 6 6.6741 0.8488 -3.5931 14 1 7.4502 1.5343 -3.9000 15 6 6.0650 0.0351 -4.5246 16 7 6.4294 0.0932 -5.7869 17 14 4.7222 -1.1500 -3.9937 18 1 3.4022 -0.4759 -4.0857 19 1 4.7330 -2.3403 -4.8815 20 1 4.9637 -1.5759 -2.5918 21 6 8.4665 1.3519 -1.3368 22 6 9.2926 2.4824 -0.7200 23 6 8.6327 0.0828 -0.4988 24 6 5.5877 4.1804 0.0021 25 8 6.6486 4.7687 0.0068 26 6 4.2262 4.8087 -0.0027 27 8 3.9577 5.9926 -0.0030 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2030 2.3090 -0.0005 32 1 1.2980 4.4965 -0.0019 33 1 4.0168 0.3659 0.0006 34 1 6.1453 0.9095 0.3416 35 1 7.3057 2.2198 0.6656 36 1 6.4248 -0.2258 -1.7663 37 1 5.1992 1.0307 -2.0615 38 1 6.0011 -0.4796 -6.4422 39 1 8.8108 1.1634 -2.3538 40 1 9.0233 2.5981 0.3299 41 1 10.3530 2.2422 -0.7987 42 1 9.0903 3.4121 -1.2516 43 1 8.0702 -0.7310 -0.9562 44 1 9.6881 -0.1863 -0.4521 45 1 8.2586 0.2614 0.5093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:55 Heat of formation + Delta-G solvation = -56.301647 kcal Electronic energy + Delta-G solvation = -29733.377805 eV Core-core repulsion = 25717.220038 eV Total energy + Delta-G solvation = -4016.157767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.03061 -40.90898 -39.95559 -39.08234 -38.87676 -36.42506 -34.86846 -33.02157 -32.23923 -31.46754 -29.27955 -28.64376 -28.02653 -27.44131 -25.55717 -23.76929 -23.73350 -22.71568 -21.61198 -20.45308 -19.33497 -18.87160 -18.57649 -18.03576 -17.59012 -17.24938 -16.90878 -16.70071 -16.49542 -16.43800 -16.14443 -15.62247 -15.17766 -15.08452 -14.76454 -14.65181 -14.53821 -14.48720 -14.11431 -13.95508 -13.74948 -13.42440 -13.36683 -12.97942 -12.96103 -12.79978 -12.52965 -12.40877 -12.20416 -12.10900 -11.94505 -11.91475 -11.70179 -11.55003 -11.25110 -10.79273 -10.71954 -9.66835 -9.29451 -9.11756 -8.29017 -6.32359 -1.07929 0.13005 0.61823 1.17726 1.32792 1.33788 1.43586 1.81879 2.06098 2.32240 2.50036 2.58234 3.03424 3.11763 3.31137 3.48349 3.78193 3.79992 3.97374 4.03018 4.08515 4.12899 4.28086 4.39655 4.44984 4.46799 4.47659 4.62303 4.69574 4.75228 4.81589 4.84377 4.93689 4.97006 5.00452 5.09904 5.15975 5.18668 5.23787 5.32754 5.45398 5.52626 5.60633 5.81018 5.95701 6.24981 6.25911 6.49481 6.56496 6.73624 7.30439 8.87811 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008169 B = 0.006249 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3426.596970 B = 4479.984577 C = 6584.400378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.323 6.323 3 C 0.209 3.791 4 C -0.235 4.235 5 C 0.046 3.954 6 C -0.296 4.296 7 C 0.233 3.767 8 C -0.204 4.204 9 N -0.532 5.532 10 C 0.269 3.731 11 N -0.556 5.556 12 C 0.176 3.824 13 C -0.513 4.513 14 H 0.031 0.969 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.939 3.061 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.241 1.241 21 C 0.085 3.915 22 C -0.130 4.130 23 C -0.174 4.174 24 C 0.492 3.508 25 O -0.475 6.475 26 C 0.400 3.600 27 O -0.411 6.411 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.006 0.994 37 H 0.023 0.977 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 -1.964 18.412 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.161 3.839 4 C -0.254 4.254 5 C 0.027 3.973 6 C -0.301 4.301 7 C 0.136 3.864 8 C -0.226 4.226 9 N -0.256 5.256 10 C 0.059 3.941 11 N -0.281 5.281 12 C 0.050 3.950 13 C -0.551 4.551 14 H 0.050 0.950 15 C -0.187 4.187 16 N -0.589 5.589 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.164 1.164 21 C -0.023 4.023 22 C -0.188 4.188 23 C -0.232 4.232 24 C 0.276 3.724 25 O -0.347 6.347 26 C 0.274 3.726 27 O -0.284 6.284 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.198 0.802 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.763 -0.837 18.024 22.100 hybrid contribution -0.032 -1.137 -0.551 1.264 sum -12.794 -1.974 17.473 21.746 Atomic orbital electron populations 1.23596 0.74959 1.06303 1.03490 1.86045 1.24740 1.26272 1.86470 1.19004 0.90783 0.85634 0.88523 1.21272 1.02331 0.90139 1.11704 1.20604 0.90058 0.99519 0.87085 1.20330 0.95777 0.92167 1.21816 1.18137 0.82417 0.94445 0.91424 1.19458 0.92865 0.95859 1.14391 1.45867 1.05703 1.06941 1.67135 1.22316 0.88429 0.91263 0.92068 1.61628 1.03681 1.50825 1.11960 1.19977 0.93084 0.89828 0.92145 1.21187 1.20600 1.20960 0.92341 0.95040 1.25815 0.99408 0.98938 0.94572 1.70060 1.44573 1.41300 1.02978 0.85825 0.79559 0.78546 0.79816 1.19261 1.20887 1.16401 1.21570 0.86215 0.94599 0.99926 1.21777 0.99600 0.97231 1.00178 1.22393 1.03338 0.97687 0.99811 1.21376 0.91562 0.83173 0.76255 1.90726 1.31955 1.67679 1.44336 1.22276 0.89657 0.88454 0.72235 1.90552 1.84158 1.18601 1.35055 0.90974 0.86207 0.89734 0.80195 0.81453 0.84442 0.89372 0.86891 0.97615 0.95867 0.92533 0.91912 0.91911 0.90530 0.94471 0.93499 0.90407 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.32 -6.26 10.47 -89.38 -0.94 -7.20 16 3 C 0.21 4.48 6.69 22.68 0.15 4.63 16 4 C -0.24 -3.80 8.97 22.13 0.20 -3.60 16 5 C 0.05 0.88 10.05 22.26 0.22 1.10 16 6 C -0.30 -8.08 6.33 -19.99 -0.13 -8.20 16 7 C 0.23 6.84 6.28 38.63 0.24 7.08 16 8 C -0.20 -5.40 9.00 22.53 0.20 -5.20 16 9 N -0.53 -17.56 2.98 -642.15 -1.91 -19.47 16 10 C 0.27 8.54 4.05 170.81 0.69 9.24 16 11 N -0.56 -22.35 4.55 -887.83 -4.04 -26.38 16 12 C 0.18 8.04 3.50 85.56 0.30 8.34 16 13 C -0.51 -29.37 8.93 25.60 0.23 -29.14 16 14 H 0.03 2.06 7.42 -2.91 -0.02 2.04 16 15 C 0.01 0.57 5.47 84.66 0.46 1.04 16 16 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 17 Si 0.94 42.92 27.47 68.60 1.88 44.80 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 21 C 0.09 3.10 2.77 44.91 0.12 3.22 16 22 C -0.13 -4.11 9.04 71.98 0.65 -3.46 16 23 C -0.17 -4.99 8.62 71.98 0.62 -4.37 16 24 C 0.49 17.88 8.17 87.48 0.71 18.60 16 25 O -0.48 -19.72 17.81 -3.13 -0.06 -19.77 16 26 C 0.40 13.17 7.95 27.79 0.22 13.39 16 27 O -0.41 -14.64 18.03 -3.41 -0.06 -14.71 16 28 H 0.07 0.54 7.64 -2.39 -0.02 0.52 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.39 7.64 -2.39 -0.02 0.37 16 31 H 0.18 1.42 6.25 -2.91 -0.02 1.41 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.14 3.66 7.51 -2.91 -0.02 3.64 16 34 H 0.09 2.41 6.82 -2.39 -0.02 2.39 16 35 H 0.11 3.23 5.59 -2.39 -0.01 3.22 16 36 H 0.01 0.27 5.46 -2.39 -0.01 0.26 16 37 H 0.02 1.07 6.32 -2.39 -0.02 1.05 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.06 2.80 6.66 -2.38 -0.02 2.78 16 40 H 0.06 1.74 6.43 -2.38 -0.02 1.73 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.50 6.63 -2.39 -0.02 1.49 16 44 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.07 1.67 6.69 -2.39 -0.02 1.65 16 Total: -1.00 -77.08 367.66 2.17 -74.91 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.97 Total: 13.05 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.02 Total: 13.88 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.65 Total: -104.96 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.05 Total: -41.68 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -77.08 2.17 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.604 kcal (2) G-P(sol) polarization free energy of solvation -77.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds