Wall clock time and date at job start Tue Mar 31 2020 17:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 H 1.08998 * 110.88631 * 54.29063 * 3 2 1 5 5 C 1.55156 * 111.00503 * 178.17667 * 3 2 1 6 6 C 1.54368 * 102.92033 * 153.54438 * 5 3 2 7 7 N 1.47020 * 107.28791 * 337.86540 * 6 5 3 8 8 C 1.34786 * 125.64429 * 178.87455 * 7 6 5 9 9 O 1.21359 * 119.99444 * 180.02562 * 8 7 6 10 10 C 1.49349 * 120.00326 * 0.03787 * 8 7 6 11 11 O 1.21375 * 119.99672 * 359.97438 * 10 8 7 12 12 N 1.34772 * 120.00156 * 180.02562 * 10 8 7 13 13 C 1.39722 * 119.99985 * 175.49781 * 12 10 8 14 14 C 1.39021 * 120.04527 * 35.13802 * 13 12 10 15 15 C 1.38130 * 120.06623 * 180.02562 * 14 13 12 16 16 C 1.38188 * 120.14408 * 359.97438 * 15 14 13 17 17 C 1.38918 * 120.08025 * 359.97438 * 16 15 14 18 18 O 1.35747 * 120.03114 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00294 * 185.37379 * 18 17 16 20 20 H 1.07996 * 119.99811 * 354.97700 * 19 18 17 21 21 C 1.38655 * 119.99973 * 174.97853 * 19 18 17 22 22 N 1.31554 * 119.99635 * 179.97438 * 21 19 18 23 23 Si 1.86791 * 120.00276 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47096 * 89.99998 * 23 21 19 25 25 H 1.48499 * 109.47529 * 210.00163 * 23 21 19 26 26 H 1.48502 * 109.47280 * 330.00534 * 23 21 19 27 27 C 1.38763 * 119.93712 * 359.75018 * 17 16 15 28 28 C 1.47418 * 108.70785 * 358.90248 * 7 6 5 29 29 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47666 * 300.00466 * 1 2 3 31 31 H 1.09003 * 109.46919 * 60.00397 * 1 2 3 32 32 H 1.08996 * 109.47407 * 240.00018 * 2 1 3 33 33 H 1.09003 * 109.46919 * 119.99602 * 2 1 3 34 34 H 1.09004 * 110.72018 * 271.93860 * 5 3 2 35 35 H 1.09001 * 110.71861 * 35.21442 * 5 3 2 36 36 H 1.09001 * 109.90114 * 218.42351 * 6 5 3 37 37 H 1.08999 * 109.97348 * 97.34419 * 6 5 3 38 38 H 0.97003 * 119.99983 * 355.48993 * 12 10 8 39 39 H 1.08001 * 119.96427 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.93068 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.95708 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00160 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.06964 * 180.28159 * 27 17 16 44 44 H 1.09000 * 110.37331 * 265.29809 * 28 7 6 45 45 H 1.09002 * 110.46064 * 143.01627 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 2.0070 0.8269 5 6 3.5903 1.4843 0.0461 6 6 3.9194 2.8330 -0.6290 7 7 2.7636 3.1988 -1.4607 8 6 2.6500 4.3219 -2.1972 9 8 1.6454 4.5215 -2.8482 10 6 3.7603 5.3207 -2.2123 11 8 4.7648 5.1212 -1.5609 12 7 3.6463 6.4439 -2.9482 13 6 4.6426 7.4218 -2.8893 14 6 5.9738 7.0510 -2.7380 15 6 6.9590 8.0174 -2.6791 16 6 6.6252 9.3552 -2.7709 17 6 5.2969 9.7325 -2.9232 18 8 4.9701 11.0470 -3.0128 19 6 3.6568 11.3502 -3.0472 20 1 2.9211 10.5605 -3.0859 21 6 3.2508 12.6759 -3.0330 22 7 1.9694 12.9718 -3.0671 23 14 4.5232 14.0418 -2.9654 24 1 4.9042 14.4321 -4.3466 25 1 3.9517 15.2163 -2.2589 26 1 5.7254 13.5628 -2.2370 27 6 4.3051 8.7642 -2.9885 28 6 1.7494 2.1342 -1.3554 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9460 1.4711 1.0764 35 1 4.0154 0.6559 -0.5206 36 1 4.8071 2.7287 -1.2530 37 1 4.0873 3.5978 0.1293 38 1 2.8727 6.5735 -3.5190 39 1 6.2379 6.0063 -2.6656 40 1 7.9925 7.7268 -2.5612 41 1 7.3979 10.1083 -2.7241 42 1 1.6853 13.8992 -3.0568 43 1 3.2723 9.0550 -3.1115 44 1 1.8585 1.4237 -2.1748 45 1 0.7467 2.5617 -1.3559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756234822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:30 Heat of formation + Delta-G solvation = -63.693757 kcal Electronic energy + Delta-G solvation = -27686.640729 eV Core-core repulsion = 23670.162416 eV Total energy + Delta-G solvation = -4016.478313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.07517 -39.73330 -38.77156 -37.95338 -36.67275 -34.75640 -34.07406 -32.37906 -30.95744 -29.65879 -29.08987 -28.66236 -25.96880 -25.22594 -23.77177 -22.55042 -21.84531 -21.34621 -20.56555 -19.78462 -18.35512 -17.89925 -17.44667 -16.93925 -16.57358 -15.84978 -15.63693 -15.23101 -14.96395 -14.80771 -14.32782 -14.13071 -13.98249 -13.82165 -13.69909 -13.54873 -13.26427 -13.13823 -13.06821 -12.76380 -12.37835 -12.26751 -12.20629 -11.87720 -11.66469 -11.60122 -11.14185 -11.07194 -11.01637 -10.97560 -10.96792 -10.83909 -10.29131 -9.94754 -9.56180 -9.42456 -9.02551 -8.88171 -7.90766 -7.38432 -6.43989 -4.11863 1.20206 1.97205 2.16139 2.27155 3.15984 3.21886 3.24390 3.37864 3.39117 4.01704 4.18207 4.21738 4.32001 4.33622 4.45810 4.76857 4.80196 4.87534 4.89206 4.99200 5.07326 5.08059 5.30854 5.35503 5.47852 5.53182 5.54519 5.59780 5.61447 5.64338 5.81420 5.83131 5.84909 5.88581 5.96737 6.05450 6.10266 6.39791 6.71141 6.75790 6.97225 7.09423 7.12820 7.32824 7.54922 7.63282 7.75011 7.96436 8.02247 8.90749 9.51437 10.63476 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002325 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.909798 B =12039.454247 C =12974.147799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.131 4.131 6 C 0.105 3.895 7 N -0.593 5.593 8 C 0.524 3.476 9 O -0.518 6.518 10 C 0.507 3.493 11 O -0.499 6.499 12 N -0.636 5.636 13 C 0.171 3.829 14 C -0.196 4.196 15 C -0.066 4.066 16 C -0.195 4.195 17 C 0.173 3.827 18 O -0.214 6.214 19 C -0.391 4.391 20 H 0.106 0.894 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.238 4.238 28 C 0.109 3.891 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.420 0.580 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.280 0.720 43 H 0.139 0.861 44 H 0.074 0.926 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -24.797 5.451 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.106 0.894 5 C -0.169 4.169 6 C -0.017 4.017 7 N -0.328 5.328 8 C 0.306 3.694 9 O -0.394 6.394 10 C 0.289 3.711 11 O -0.373 6.373 12 N -0.281 5.281 13 C 0.078 3.922 14 C -0.217 4.217 15 C -0.085 4.085 16 C -0.215 4.215 17 C 0.120 3.880 18 O -0.118 6.118 19 C -0.467 4.467 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.259 4.259 28 C -0.013 4.013 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.044 -24.386 5.515 25.085 hybrid contribution -0.218 0.747 -0.254 0.819 sum 1.826 -23.639 5.261 24.286 Atomic orbital electron populations 1.21823 0.95487 1.01863 1.02246 1.21460 0.96194 0.94691 1.02555 1.22470 0.95781 0.96856 0.97188 0.89384 1.22816 0.95376 0.96907 1.01804 1.22236 0.88266 0.96620 0.94593 1.48212 1.19954 1.19037 1.45563 1.19782 0.87587 0.81711 0.80274 1.90789 1.30712 1.76012 1.41873 1.19942 0.87547 0.82968 0.80676 1.90746 1.29800 1.75537 1.41209 1.43099 1.24395 1.17155 1.43499 1.17423 0.87393 0.86848 1.00487 1.20727 0.90630 0.99927 1.10412 1.20546 0.98305 0.91671 0.97936 1.20297 0.93929 0.96159 1.11066 1.18780 0.92507 0.83899 0.92798 1.83596 1.28268 1.19445 1.80523 1.20744 0.78770 0.94796 1.52387 0.87684 1.24472 0.96468 0.97444 0.95577 1.69646 1.13817 1.20334 1.47762 0.86169 0.81516 0.80145 0.79018 1.19841 1.20808 1.18280 1.20976 1.01245 0.90345 1.13330 1.22442 0.92667 0.88699 0.97454 0.92564 0.92536 0.92424 0.91524 0.91257 0.89632 0.90319 0.90206 0.90034 0.74272 0.85610 0.86256 0.86232 0.90998 0.84369 0.90783 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.79 37.16 0.36 -0.42 16 2 C -0.11 -0.53 5.44 -26.73 -0.15 -0.68 16 3 C -0.10 -0.65 3.04 -88.47 -0.27 -0.92 16 4 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.13 -0.80 6.42 -24.87 -0.16 -0.96 16 6 C 0.11 0.99 5.49 -3.04 -0.02 0.97 16 7 N -0.59 -6.74 3.33 -171.04 -0.57 -7.31 16 8 C 0.52 7.50 7.91 -11.63 -0.09 7.41 16 9 O -0.52 -8.44 16.74 5.49 0.09 -8.35 16 10 C 0.51 7.92 7.69 -11.63 -0.09 7.83 16 11 O -0.50 -8.15 11.55 5.47 0.06 -8.09 16 12 N -0.64 -10.45 5.32 -10.31 -0.05 -10.50 16 13 C 0.17 3.23 6.29 -83.77 -0.53 2.70 16 14 C -0.20 -3.51 8.69 -39.33 -0.34 -3.86 16 15 C -0.07 -1.13 10.03 -39.64 -0.40 -1.53 16 16 C -0.19 -3.81 9.99 -39.35 -0.39 -4.20 16 17 C 0.17 3.95 6.64 -39.14 -0.26 3.69 16 18 O -0.21 -5.55 8.58 0.07 0.00 -5.55 16 19 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 20 H 0.11 2.99 5.43 -52.49 -0.29 2.71 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.26 13.96 55.48 0.77 -24.48 16 23 Si 0.91 21.51 28.62 -169.99 -4.86 16.65 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.24 -5.10 9.08 -39.19 -0.36 -5.45 16 28 C 0.11 0.95 5.71 -2.53 -0.01 0.94 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 7.59 -51.93 -0.39 -0.08 16 32 H 0.07 0.30 8.03 -51.93 -0.42 -0.11 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 36 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 37 H 0.08 0.86 7.57 -51.93 -0.39 0.46 16 38 H 0.42 6.35 8.30 -40.82 -0.34 6.01 16 39 H 0.13 2.15 6.23 -52.49 -0.33 1.82 16 40 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 42 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.14 3.09 5.64 -52.49 -0.30 2.80 16 44 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 45 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.29 372.70 -7.62 -38.91 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.19 Total: 6.51 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.49 Total: -3.40 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.15 Total: -42.30 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.16 Total: -21.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.29 -7.62 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756234822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.785 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds