Wall clock time and date at job start Tue Mar 31 2020 17:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 H 1.08998 * 110.88631 * 54.29063 * 3 2 1 5 5 C 1.55156 * 111.00503 * 178.17667 * 3 2 1 6 6 C 1.54368 * 102.92033 * 153.54438 * 5 3 2 7 7 N 1.47020 * 107.28791 * 337.86540 * 6 5 3 8 8 C 1.34786 * 125.64429 * 178.87455 * 7 6 5 9 9 O 1.21359 * 119.99444 * 180.02562 * 8 7 6 10 10 C 1.49349 * 120.00326 * 0.03787 * 8 7 6 11 11 O 1.21375 * 119.99672 * 359.97438 * 10 8 7 12 12 N 1.34772 * 120.00156 * 180.02562 * 10 8 7 13 13 C 1.39722 * 119.99985 * 175.49781 * 12 10 8 14 14 C 1.39021 * 120.04527 * 35.13802 * 13 12 10 15 15 C 1.38130 * 120.06623 * 180.02562 * 14 13 12 16 16 C 1.38188 * 120.14408 * 359.97438 * 15 14 13 17 17 C 1.38918 * 120.08025 * 359.97438 * 16 15 14 18 18 O 1.35747 * 120.03114 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00294 * 185.37379 * 18 17 16 20 20 H 1.07996 * 119.99811 * 354.97700 * 19 18 17 21 21 C 1.38655 * 119.99973 * 174.97853 * 19 18 17 22 22 N 1.31554 * 119.99635 * 179.97438 * 21 19 18 23 23 Si 1.86791 * 120.00276 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47096 * 89.99998 * 23 21 19 25 25 H 1.48499 * 109.47529 * 210.00163 * 23 21 19 26 26 H 1.48502 * 109.47280 * 330.00534 * 23 21 19 27 27 C 1.38763 * 119.93712 * 359.75018 * 17 16 15 28 28 C 1.47418 * 108.70785 * 358.90248 * 7 6 5 29 29 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47666 * 300.00466 * 1 2 3 31 31 H 1.09003 * 109.46919 * 60.00397 * 1 2 3 32 32 H 1.08996 * 109.47407 * 240.00018 * 2 1 3 33 33 H 1.09003 * 109.46919 * 119.99602 * 2 1 3 34 34 H 1.09004 * 110.72018 * 271.93860 * 5 3 2 35 35 H 1.09001 * 110.71861 * 35.21442 * 5 3 2 36 36 H 1.09001 * 109.90114 * 218.42351 * 6 5 3 37 37 H 1.08999 * 109.97348 * 97.34419 * 6 5 3 38 38 H 0.97003 * 119.99983 * 355.48993 * 12 10 8 39 39 H 1.08001 * 119.96427 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.93068 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.95708 * 179.97438 * 16 15 14 42 42 H 0.97001 * 120.00160 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.06964 * 180.28159 * 27 17 16 44 44 H 1.09000 * 110.37331 * 265.29809 * 28 7 6 45 45 H 1.09002 * 110.46064 * 143.01627 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 2.0070 0.8269 5 6 3.5903 1.4843 0.0461 6 6 3.9194 2.8330 -0.6290 7 7 2.7636 3.1988 -1.4607 8 6 2.6500 4.3219 -2.1972 9 8 1.6454 4.5215 -2.8482 10 6 3.7603 5.3207 -2.2123 11 8 4.7648 5.1212 -1.5609 12 7 3.6463 6.4439 -2.9482 13 6 4.6426 7.4218 -2.8893 14 6 5.9738 7.0510 -2.7380 15 6 6.9590 8.0174 -2.6791 16 6 6.6252 9.3552 -2.7709 17 6 5.2969 9.7325 -2.9232 18 8 4.9701 11.0470 -3.0128 19 6 3.6568 11.3502 -3.0472 20 1 2.9211 10.5605 -3.0859 21 6 3.2508 12.6759 -3.0330 22 7 1.9694 12.9718 -3.0671 23 14 4.5232 14.0418 -2.9654 24 1 4.9042 14.4321 -4.3466 25 1 3.9517 15.2163 -2.2589 26 1 5.7254 13.5628 -2.2370 27 6 4.3051 8.7642 -2.9885 28 6 1.7494 2.1342 -1.3554 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9460 1.4711 1.0764 35 1 4.0154 0.6559 -0.5206 36 1 4.8071 2.7287 -1.2530 37 1 4.0873 3.5978 0.1293 38 1 2.8727 6.5735 -3.5190 39 1 6.2379 6.0063 -2.6656 40 1 7.9925 7.7268 -2.5612 41 1 7.3979 10.1083 -2.7241 42 1 1.6853 13.8992 -3.0568 43 1 3.2723 9.0550 -3.1115 44 1 1.8585 1.4237 -2.1748 45 1 0.7467 2.5617 -1.3559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756234822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:28 Heat of formation + Delta-G solvation = -83.313074 kcal Electronic energy + Delta-G solvation = -27687.491487 eV Core-core repulsion = 23670.162416 eV Total energy + Delta-G solvation = -4017.329071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28561 -41.06571 -40.17417 -38.97737 -38.27052 -35.97227 -34.95548 -34.42285 -31.64548 -31.20928 -30.62129 -29.45965 -27.37910 -26.77238 -24.76892 -23.48056 -23.21650 -22.64006 -21.22498 -21.03162 -19.90224 -19.54717 -18.85147 -18.11264 -17.59659 -17.14063 -16.89012 -16.76753 -16.39811 -15.89907 -15.77780 -15.59478 -15.35258 -14.92799 -14.74858 -14.47456 -14.41611 -14.24657 -14.07923 -14.02052 -13.65994 -13.50930 -13.36761 -13.07639 -12.79728 -12.73614 -12.61314 -12.44209 -12.07286 -12.05523 -11.59591 -11.56200 -11.52523 -11.46353 -11.38361 -10.89234 -10.71671 -9.96818 -9.48750 -9.03754 -8.50961 -6.24894 -0.09894 0.52802 0.62778 1.04503 1.32804 1.37289 1.52937 1.92987 2.26062 2.28750 2.74036 2.97766 3.04265 3.15469 3.50891 3.57565 3.81708 4.05637 4.24336 4.25279 4.30506 4.35367 4.35801 4.47618 4.52623 4.53444 4.54939 4.67670 4.81489 4.88176 4.91060 4.96146 5.00340 5.09687 5.19476 5.22500 5.25681 5.26450 5.37204 5.38592 5.51059 5.57414 5.71581 5.80563 5.92783 6.08000 6.15797 6.44440 6.70822 6.82731 7.54278 8.60427 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002325 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.909798 B =12039.454247 C =12974.147799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.084 0.916 5 C -0.119 4.119 6 C 0.098 3.902 7 N -0.586 5.586 8 C 0.521 3.479 9 O -0.546 6.546 10 C 0.509 3.491 11 O -0.504 6.504 12 N -0.639 5.639 13 C 0.171 3.829 14 C -0.184 4.184 15 C -0.050 4.050 16 C -0.192 4.192 17 C 0.139 3.861 18 O -0.237 6.237 19 C -0.401 4.401 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.252 4.252 28 C 0.102 3.898 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.423 0.577 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.285 0.715 43 H 0.115 0.885 44 H 0.086 0.914 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -27.356 6.468 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C -0.114 4.114 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.023 4.023 7 N -0.319 5.319 8 C 0.304 3.696 9 O -0.425 6.425 10 C 0.292 3.708 11 O -0.378 6.378 12 N -0.285 5.285 13 C 0.078 3.922 14 C -0.205 4.205 15 C -0.068 4.068 16 C -0.212 4.212 17 C 0.089 3.911 18 O -0.144 6.144 19 C -0.477 4.477 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.274 4.274 28 C -0.019 4.019 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.157 0.843 42 H 0.095 0.905 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.670 -27.028 6.557 28.202 hybrid contribution -0.950 1.175 -0.520 1.598 sum 3.720 -25.854 6.037 26.808 Atomic orbital electron populations 1.21843 0.95911 1.02195 1.01711 1.21437 0.95754 0.93467 1.03605 1.22452 0.96100 0.97596 0.95291 0.89714 1.22821 0.94965 0.95191 1.02708 1.22424 0.87549 0.98249 0.94124 1.48397 1.21160 1.18246 1.44075 1.19508 0.86822 0.82360 0.80943 1.90779 1.31437 1.76780 1.43506 1.20211 0.87875 0.82747 0.79993 1.90722 1.30149 1.75722 1.41229 1.43123 1.24250 1.17123 1.43955 1.17494 0.88630 0.86275 0.99848 1.21091 0.90048 1.01083 1.08244 1.21056 1.00401 0.90136 0.95188 1.20644 0.92686 0.97866 1.09969 1.19349 0.94321 0.83117 0.94273 1.83541 1.26628 1.21215 1.83007 1.20676 0.79593 0.94667 1.52739 0.90280 1.25313 0.98469 0.99715 0.95388 1.69734 1.15558 1.21131 1.49887 0.85189 0.78743 0.77264 0.79386 1.18943 1.19432 1.18331 1.20917 1.00175 0.91735 1.14535 1.22710 0.91465 0.88136 0.99607 0.91814 0.92805 0.93301 0.90794 0.89818 0.87847 0.88615 0.90322 0.91186 0.73858 0.83941 0.81508 0.84326 0.90544 0.86683 0.89571 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.79 71.98 0.70 -0.62 16 2 C -0.10 -0.71 5.44 30.60 0.17 -0.54 16 3 C -0.10 -0.98 3.04 -9.40 -0.03 -1.01 16 4 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 5 C -0.12 -1.08 6.42 31.80 0.20 -0.88 16 6 C 0.10 1.66 5.49 86.74 0.48 2.14 16 7 N -0.59 -12.76 3.33 -813.39 -2.71 -15.46 16 8 C 0.52 14.91 7.91 87.24 0.69 15.60 16 9 O -0.55 -18.18 16.74 -3.27 -0.05 -18.24 16 10 C 0.51 15.70 7.69 87.24 0.67 16.37 16 11 O -0.50 -15.73 11.55 -3.33 -0.04 -15.77 16 12 N -0.64 -21.25 5.32 -304.90 -1.62 -22.87 16 13 C 0.17 6.43 6.29 38.20 0.24 6.67 16 14 C -0.18 -6.13 8.69 22.43 0.19 -5.93 16 15 C -0.05 -1.52 10.03 22.23 0.22 -1.30 16 16 C -0.19 -7.14 9.99 22.42 0.22 -6.91 16 17 C 0.14 6.47 6.64 22.56 0.15 6.62 16 18 O -0.24 -12.69 8.58 -22.68 -0.19 -12.89 16 19 C -0.40 -23.53 9.95 67.92 0.68 -22.86 16 20 H 0.08 4.89 5.43 -2.91 -0.02 4.88 16 21 C 0.01 0.56 5.49 84.83 0.47 1.03 16 22 N -0.92 -55.33 13.96 21.61 0.30 -55.02 16 23 Si 0.97 45.15 28.62 68.60 1.96 47.12 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 C -0.25 -11.25 9.08 22.52 0.20 -11.05 16 28 C 0.10 1.65 5.71 86.86 0.50 2.15 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.49 7.59 -2.39 -0.02 0.47 16 32 H 0.07 0.43 8.03 -2.39 -0.02 0.41 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.10 0.61 8.04 -2.39 -0.02 0.59 16 36 H 0.08 1.37 7.69 -2.39 -0.02 1.36 16 37 H 0.07 1.37 7.57 -2.39 -0.02 1.35 16 38 H 0.42 13.42 8.30 -92.71 -0.77 12.65 16 39 H 0.14 4.36 6.23 -2.91 -0.02 4.34 16 40 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.12 5.62 5.64 -2.91 -0.02 5.61 16 44 H 0.09 1.22 7.96 -2.39 -0.02 1.20 16 45 H 0.07 1.35 8.00 -2.39 -0.02 1.33 16 Total: -1.00 -70.60 372.70 3.66 -66.93 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.26 Total: 26.72 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.76 Total: -0.52 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -4.03 Total: -93.35 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.29 Total: -46.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.96 Total: 47.12 kcal Total: -70.60 3.66 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756234822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.379 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds