Wall clock time and date at job start Tue Mar 31 2020 17:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 C 1.40142 * 120.34282 * 89.99363 * 17 16 14 19 19 C 1.38519 * 120.64249 * 48.68554 * 18 17 16 20 20 C 1.38276 * 119.84612 * 180.18972 * 19 18 17 21 21 C 1.38281 * 120.16462 * 0.02562 * 20 19 18 22 22 C 1.38285 * 120.26194 * 359.91846 * 21 20 19 23 23 C 1.38458 * 119.92612 * 359.96930 * 22 21 20 24 24 O 1.35907 * 120.47546 * 180.55399 * 23 22 21 25 25 C 1.42531 * 117.18032 * 104.43901 * 24 23 22 26 26 C 1.52723 * 110.43706 * 43.75409 * 25 24 23 27 27 C 1.35188 * 120.33822 * 269.71828 * 17 16 14 28 28 O 1.21291 * 120.15941 * 3.59485 * 27 17 16 29 29 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 31 31 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 36 36 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 37 37 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 38 38 H 1.08002 * 120.08409 * 0.20467 * 19 18 17 39 39 H 1.08004 * 119.91917 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.86476 * 179.89289 * 21 20 19 41 41 H 1.08002 * 120.03474 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.30898 * 164.04739 * 25 24 23 43 43 H 1.08994 * 109.31007 * 283.45502 * 25 24 23 44 44 H 1.09005 * 109.36895 * 164.12573 * 26 25 24 45 45 H 1.09002 * 109.36939 * 283.74540 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 6 -1.5312 5.1736 -2.0570 19 6 -0.8168 6.2369 -2.5842 20 6 -1.0328 7.5160 -2.1054 21 6 -1.9590 7.7352 -1.1023 22 6 -2.6762 6.6781 -0.5728 23 6 -2.4674 5.3946 -1.0484 24 8 -3.1741 4.3491 -0.5439 25 6 -4.2273 3.8260 -1.3492 26 6 -3.7743 3.6974 -2.8020 27 6 -2.3883 3.1105 -2.8667 28 8 -2.2298 1.9604 -3.2179 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 2.2719 2.1232 -1.9978 36 1 0.7275 4.1530 -2.8679 37 1 0.0672 2.6131 -3.4684 38 1 -0.0928 6.0674 -3.3675 39 1 -0.4767 8.3459 -2.5158 40 1 -2.1226 8.7361 -0.7307 41 1 -3.3984 6.8534 0.2109 42 1 -4.5151 2.8442 -0.9732 43 1 -5.0866 4.4946 -1.2975 44 1 -4.4659 3.0493 -3.3403 45 1 -3.7687 4.6830 -3.2676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:29 Heat of formation + Delta-G solvation = -67.807116 kcal Electronic energy + Delta-G solvation = -29799.095495 eV Core-core repulsion = 25782.438813 eV Total energy + Delta-G solvation = -4016.656682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41639 -39.16344 -38.52801 -37.61749 -35.58456 -34.73353 -32.36349 -32.12477 -31.01716 -30.52830 -29.84702 -27.73233 -26.48223 -24.82869 -23.04674 -22.74705 -22.08090 -20.82876 -19.84747 -19.24620 -17.64275 -17.40543 -17.17631 -17.01453 -16.50220 -15.80786 -15.42929 -15.18348 -14.94979 -14.63939 -14.55256 -14.32690 -14.09099 -13.76657 -13.53125 -13.07765 -12.88029 -12.61604 -12.45252 -12.36422 -12.10446 -11.84425 -11.60453 -11.31587 -11.25118 -11.19981 -10.92580 -10.78818 -10.59731 -10.27783 -10.10195 -10.03918 -9.83317 -9.53081 -9.06687 -8.98276 -8.83968 -8.45081 -8.08263 -7.73735 -6.08137 -4.17564 0.95377 1.08209 2.40232 2.74090 3.26371 3.26984 3.32995 3.34811 3.45927 3.69210 4.17829 4.23066 4.42411 4.58258 4.63780 4.70034 4.82193 5.00970 5.13045 5.17259 5.20936 5.22991 5.31491 5.38817 5.46586 5.51105 5.55172 5.66457 5.98308 6.05981 6.25842 6.37139 6.49817 6.54743 6.58087 6.77648 7.14828 7.15627 7.29067 7.45846 7.46777 7.53756 7.67515 7.79150 7.94878 7.99437 8.23962 8.72490 8.82809 9.20680 9.49730 10.97180 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003641 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.794972 B = 7689.374531 C = 8469.715621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.483 3.517 15 O -0.524 6.524 16 C 0.090 3.910 17 N -0.539 5.539 18 C 0.124 3.876 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.117 4.117 23 C 0.096 3.904 24 O -0.311 6.311 25 C 0.076 3.924 26 C -0.179 4.179 27 C 0.531 3.469 28 O -0.518 6.518 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.097 0.903 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 14.470 -11.602 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.266 3.734 15 O -0.401 6.401 16 C -0.036 4.036 17 N -0.265 5.265 18 C 0.031 3.969 19 C -0.142 4.142 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.136 4.136 23 C 0.051 3.949 24 O -0.227 6.227 25 C 0.001 3.999 26 C -0.219 4.219 27 C 0.320 3.680 28 O -0.392 6.392 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.134 0.866 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.526 13.525 -10.762 21.948 hybrid contribution 1.409 -0.032 -0.362 1.456 sum -12.117 13.492 -11.125 21.275 Atomic orbital electron populations 1.21816 0.98204 0.97941 1.01310 1.21917 0.92683 0.99806 1.02068 1.18748 0.94036 0.89131 0.80914 0.93447 1.21234 0.90737 1.39087 1.06130 0.92140 1.24891 0.98525 0.94834 0.95432 1.69910 1.35073 1.37727 1.09191 0.86467 0.84974 0.77607 0.78148 1.20611 1.21096 1.19869 1.46438 1.14466 1.56332 1.18576 1.20586 0.83242 0.80236 0.89346 1.90733 1.50887 1.58706 1.39771 1.21578 0.82653 1.00391 0.98930 1.45056 1.06492 1.11744 1.63227 1.18148 0.99173 0.84467 0.95141 1.20946 1.01190 0.91479 1.00565 1.21030 0.98209 0.96293 0.97203 1.21050 0.96453 0.98827 0.97044 1.21187 1.00998 0.90472 1.00971 1.18722 0.95393 0.87639 0.93181 1.86161 1.46673 1.46702 1.43207 1.22737 0.88843 1.00571 0.87750 1.22442 0.94927 1.04079 1.00453 1.20465 0.86064 0.85483 0.76002 1.90741 1.85873 1.16328 1.46240 0.96064 0.93387 0.94021 0.95138 0.88464 0.92610 0.78159 0.87807 0.87108 0.85099 0.85197 0.85260 0.84808 0.87460 0.91296 0.86629 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.51 37.16 0.32 -3.00 16 2 C -0.13 -3.23 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 7.10 2.24 -69.08 -0.15 6.94 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.25 11.31 55.43 0.63 -24.62 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 N -0.71 -15.11 5.02 -54.93 -0.28 -15.39 16 14 C 0.48 10.01 6.47 -10.99 -0.07 9.94 16 15 O -0.52 -12.92 13.57 5.55 0.08 -12.85 16 16 C 0.09 1.39 5.82 -5.19 -0.03 1.36 16 17 N -0.54 -8.26 2.07 -114.53 -0.24 -8.49 16 18 C 0.12 1.69 5.02 -83.53 -0.42 1.27 16 19 C -0.12 -1.30 9.31 -39.46 -0.37 -1.67 16 20 C -0.11 -0.97 10.04 -39.55 -0.40 -1.36 16 21 C -0.12 -1.03 10.04 -39.55 -0.40 -1.43 16 22 C -0.12 -1.28 9.99 -39.48 -0.39 -1.68 16 23 C 0.10 1.33 5.44 -39.08 -0.21 1.12 16 24 O -0.31 -4.80 9.91 -19.45 -0.19 -4.99 16 25 C 0.08 0.85 6.95 37.02 0.26 1.10 16 26 C -0.18 -1.96 5.44 -28.05 -0.15 -2.11 16 27 C 0.53 8.36 6.84 -10.83 -0.07 8.29 16 28 O -0.52 -9.93 16.77 5.55 0.09 -9.84 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 31 H 0.04 1.03 5.64 -51.93 -0.29 0.74 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.73 5.96 -51.93 -0.31 2.42 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.39 7.05 8.54 -40.82 -0.35 6.70 16 36 H 0.10 1.25 6.94 -51.93 -0.36 0.89 16 37 H 0.11 1.61 7.50 -51.93 -0.39 1.22 16 38 H 0.13 1.14 7.42 -52.49 -0.39 0.75 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.12 1.04 8.13 -51.93 -0.42 0.61 16 45 H 0.09 0.84 7.51 -51.93 -0.39 0.45 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -35.65 366.93 -8.24 -43.90 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.20 Total: 8.41 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.64 Total: 2.51 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.11 Total: -48.50 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.02 Total: -27.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.65 -8.24 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.911 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds