Wall clock time and date at job start Tue Mar 31 2020 17:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 C 1.40142 * 120.34282 * 89.99363 * 17 16 14 19 19 C 1.38519 * 120.64249 * 48.68554 * 18 17 16 20 20 C 1.38276 * 119.84612 * 180.18972 * 19 18 17 21 21 C 1.38281 * 120.16462 * 0.02562 * 20 19 18 22 22 C 1.38285 * 120.26194 * 359.91846 * 21 20 19 23 23 C 1.38458 * 119.92612 * 359.96930 * 22 21 20 24 24 O 1.35907 * 120.47546 * 180.55399 * 23 22 21 25 25 C 1.42531 * 117.18032 * 104.43901 * 24 23 22 26 26 C 1.52723 * 110.43706 * 43.75409 * 25 24 23 27 27 C 1.35188 * 120.33822 * 269.71828 * 17 16 14 28 28 O 1.21291 * 120.15941 * 3.59485 * 27 17 16 29 29 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 31 31 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 36 36 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 37 37 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 38 38 H 1.08002 * 120.08409 * 0.20467 * 19 18 17 39 39 H 1.08004 * 119.91917 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.86476 * 179.89289 * 21 20 19 41 41 H 1.08002 * 120.03474 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.30898 * 164.04739 * 25 24 23 43 43 H 1.08994 * 109.31007 * 283.45502 * 25 24 23 44 44 H 1.09005 * 109.36895 * 164.12573 * 26 25 24 45 45 H 1.09002 * 109.36939 * 283.74540 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 6 -1.5312 5.1736 -2.0570 19 6 -0.8168 6.2369 -2.5842 20 6 -1.0328 7.5160 -2.1054 21 6 -1.9590 7.7352 -1.1023 22 6 -2.6762 6.6781 -0.5728 23 6 -2.4674 5.3946 -1.0484 24 8 -3.1741 4.3491 -0.5439 25 6 -4.2273 3.8260 -1.3492 26 6 -3.7743 3.6974 -2.8020 27 6 -2.3883 3.1105 -2.8667 28 8 -2.2298 1.9604 -3.2179 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 2.2719 2.1232 -1.9978 36 1 0.7275 4.1530 -2.8679 37 1 0.0672 2.6131 -3.4684 38 1 -0.0928 6.0674 -3.3675 39 1 -0.4767 8.3459 -2.5158 40 1 -2.1226 8.7361 -0.7307 41 1 -3.3984 6.8534 0.2109 42 1 -4.5151 2.8442 -0.9732 43 1 -5.0866 4.4946 -1.2975 44 1 -4.4659 3.0493 -3.3403 45 1 -3.7687 4.6830 -3.2676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:28 Heat of formation + Delta-G solvation = -92.333666 kcal Electronic energy + Delta-G solvation = -29800.159046 eV Core-core repulsion = 25782.438813 eV Total energy + Delta-G solvation = -4017.720233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.44150 -40.61370 -39.81672 -38.56637 -37.09600 -36.30230 -34.31373 -33.18846 -32.83426 -31.34738 -30.96998 -29.28865 -28.08195 -25.84557 -24.95209 -23.73221 -22.94135 -22.43284 -21.32054 -20.94630 -19.10600 -18.48016 -18.20168 -18.17565 -17.80799 -17.15585 -17.10889 -16.62380 -16.31803 -15.93530 -15.83822 -15.44069 -15.26079 -15.02530 -14.65151 -14.54641 -14.44235 -14.11863 -13.85353 -13.58224 -13.21648 -13.20785 -12.99599 -12.87835 -12.76846 -12.68132 -12.61614 -12.20698 -12.18012 -12.09613 -11.69875 -11.63939 -11.09952 -11.06746 -10.96650 -10.57920 -10.43706 -9.72726 -9.63487 -9.11008 -8.16413 -6.34535 0.11043 0.29740 1.25048 1.44362 1.45123 1.55942 1.70349 1.83369 2.36687 2.45191 2.70530 2.84579 3.12880 3.30046 3.73413 3.83762 3.87971 3.99473 4.03276 4.17603 4.21308 4.33487 4.41390 4.43926 4.46160 4.49277 4.50959 4.59849 4.66858 4.70470 4.84943 5.01257 5.08442 5.18996 5.32781 5.38628 5.47787 5.52059 5.53136 5.61732 5.74896 5.80176 5.91411 6.11244 6.13715 6.53198 6.73831 6.83497 6.99587 7.32996 7.59214 8.89287 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003641 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.794972 B = 7689.374531 C = 8469.715621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C 0.283 3.717 4 H -0.007 1.007 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.477 3.523 15 O -0.569 6.569 16 C 0.098 3.902 17 N -0.540 5.540 18 C 0.090 3.910 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.105 4.105 22 C -0.127 4.127 23 C 0.069 3.931 24 O -0.350 6.350 25 C 0.070 3.930 26 C -0.168 4.168 27 C 0.518 3.482 28 O -0.566 6.566 29 H 0.040 0.960 30 H 0.021 0.979 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.133 0.867 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 17.125 -13.507 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 C 0.180 3.820 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.798 3.202 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.182 1.182 13 N -0.356 5.356 14 C 0.262 3.738 15 O -0.448 6.448 16 C -0.028 4.028 17 N -0.266 5.266 18 C -0.002 4.002 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.146 4.146 23 C 0.024 3.976 24 O -0.268 6.268 25 C -0.004 4.004 26 C -0.208 4.208 27 C 0.309 3.691 28 O -0.444 6.444 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.151 0.849 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.688 16.235 -12.708 24.209 hybrid contribution 1.090 -0.755 0.291 1.357 sum -11.598 15.480 -12.417 22.986 Atomic orbital electron populations 1.21608 0.97491 0.98600 0.99711 1.21776 0.93118 0.99680 1.01135 1.18285 0.93741 0.88701 0.81292 0.98894 1.21578 0.91154 1.39077 1.06680 0.90711 1.25827 1.03545 0.94277 0.94969 1.70074 1.37207 1.38522 1.09784 0.85331 0.78809 0.77421 0.78682 1.20262 1.21106 1.18243 1.46202 1.15472 1.56278 1.17646 1.21561 0.82151 0.79333 0.90734 1.90716 1.52002 1.60154 1.41962 1.21576 0.84119 1.01570 0.95505 1.45151 1.06068 1.12601 1.62731 1.18452 1.00932 0.84222 0.96620 1.21260 1.00714 0.91391 1.00655 1.21475 0.97748 0.96481 0.96483 1.21489 0.95054 0.99642 0.96105 1.21426 1.01852 0.90013 1.01315 1.19093 0.96073 0.88225 0.94159 1.86083 1.47913 1.47855 1.44916 1.22935 0.89218 1.00925 0.87314 1.22457 0.92314 1.05334 1.00716 1.21365 0.87827 0.85068 0.74864 1.90700 1.86780 1.18316 1.48652 0.94114 0.95999 0.94492 0.94196 0.90973 0.92649 0.76130 0.83877 0.86110 0.83135 0.81740 0.82005 0.83794 0.88567 0.87572 0.84867 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.34 16 2 C -0.12 -6.26 5.45 30.60 0.17 -6.09 16 3 C 0.28 15.21 2.24 44.24 0.10 15.31 16 4 H -0.01 -0.44 7.58 -2.39 -0.02 -0.46 16 5 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 6 H 0.07 3.73 7.74 -2.92 -0.02 3.71 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -54.03 11.31 21.45 0.24 -53.79 16 9 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.71 -30.45 5.02 -446.09 -2.24 -32.69 16 14 C 0.48 20.16 6.47 87.66 0.57 20.73 16 15 O -0.57 -29.43 13.57 -3.05 -0.04 -29.48 16 16 C 0.10 2.96 5.82 85.63 0.50 3.45 16 17 N -0.54 -16.39 2.07 -634.43 -1.32 -17.71 16 18 C 0.09 2.35 5.02 38.15 0.19 2.54 16 19 C -0.12 -2.23 9.31 22.35 0.21 -2.02 16 20 C -0.10 -1.43 10.04 22.29 0.22 -1.21 16 21 C -0.10 -1.51 10.04 22.29 0.22 -1.29 16 22 C -0.13 -2.58 9.99 22.33 0.22 -2.36 16 23 C 0.07 1.89 5.44 22.60 0.12 2.01 16 24 O -0.35 -11.12 9.91 -92.50 -0.92 -12.04 16 25 C 0.07 1.57 6.95 71.89 0.50 2.07 16 26 C -0.17 -3.59 5.44 29.74 0.16 -3.43 16 27 C 0.52 16.52 6.84 87.58 0.60 17.11 16 28 O -0.57 -22.41 16.77 -3.06 -0.05 -22.46 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 31 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 4.22 5.96 -2.39 -0.01 4.20 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.40 14.44 8.54 -92.71 -0.79 13.64 16 36 H 0.14 3.11 6.94 -2.39 -0.02 3.09 16 37 H 0.12 3.43 7.50 -2.39 -0.02 3.41 16 38 H 0.15 2.07 7.42 -2.91 -0.02 2.05 16 39 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.13 2.28 8.13 -2.38 -0.02 2.26 16 45 H 0.12 1.90 7.51 -2.39 -0.02 1.88 16 Total: -1.00 -82.79 366.93 3.00 -79.79 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.23 Total: 30.33 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.07 Total: 13.41 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.31 Total: -104.19 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -1.01 Total: -63.97 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -82.79 3.00 -79.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.543 kcal (2) G-P(sol) polarization free energy of solvation -82.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds