Wall clock time and date at job start Tue Mar 31 2020 17:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46636 * 2 1 4 4 H 1.08996 * 109.47434 * 305.85242 * 3 2 1 5 5 C 1.50706 * 109.46633 * 185.85514 * 3 2 1 6 6 H 1.08003 * 119.99874 * 245.44442 * 5 3 2 7 7 C 1.37877 * 120.00249 * 65.45235 * 5 3 2 8 8 N 1.31519 * 119.99527 * 355.19189 * 7 5 3 9 9 Si 1.86797 * 120.00188 * 175.19571 * 7 5 3 10 10 H 1.48501 * 109.47176 * 94.99588 * 9 7 5 11 11 H 1.48499 * 109.46806 * 214.99599 * 9 7 5 12 12 H 1.48497 * 109.46974 * 334.99508 * 9 7 5 13 13 N 1.46494 * 109.47097 * 65.85916 * 3 2 1 14 14 C 1.34781 * 120.00098 * 274.99589 * 13 3 2 15 15 O 1.21286 * 119.99362 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00279 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.57833 * 54.72711 * 16 14 13 18 18 C 1.53530 * 109.58109 * 294.32191 * 16 14 13 19 19 N 1.47297 * 107.57620 * 181.99181 * 18 16 14 20 20 C 1.34779 * 121.16236 * 222.22410 * 19 18 16 21 21 C 1.50700 * 119.99624 * 353.96038 * 20 19 18 22 22 O 1.21292 * 120.00174 * 173.95743 * 20 19 18 23 23 C 1.40550 * 117.67990 * 41.94503 * 19 18 16 24 24 C 1.38568 * 120.09233 * 166.33462 * 23 19 18 25 25 C 1.38262 * 119.87746 * 179.87965 * 24 23 19 26 26 C 1.38273 * 120.06067 * 0.02562 * 25 24 23 27 27 C 1.38197 * 120.29682 * 0.04596 * 26 25 24 28 28 C 1.38705 * 120.05009 * 0.02562 * 27 26 25 29 29 O 1.35905 * 119.66142 * 179.78774 * 28 27 26 30 30 H 1.08999 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46737 * 299.99404 * 1 2 3 32 32 H 1.08997 * 109.47383 * 59.99609 * 1 2 3 33 33 H 1.09006 * 109.46737 * 240.00596 * 2 1 3 34 34 H 1.08995 * 109.47819 * 120.00096 * 2 1 3 35 35 H 0.97002 * 119.99299 * 180.02562 * 8 7 5 36 36 H 0.97003 * 120.00186 * 95.00005 * 13 3 2 37 37 H 1.09002 * 109.84041 * 62.46796 * 18 16 14 38 38 H 1.09004 * 109.83519 * 301.51090 * 18 16 14 39 39 H 1.09001 * 109.47126 * 65.02543 * 21 20 19 40 40 H 1.09002 * 109.46625 * 185.02421 * 21 20 19 41 41 H 1.09001 * 109.47327 * 305.02405 * 21 20 19 42 42 H 1.08003 * 120.06390 * 359.85597 * 24 23 19 43 43 H 1.08002 * 119.96764 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.84789 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.97358 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1450 6 1 4.1599 1.8055 0.6626 7 6 4.1209 0.9873 -1.3086 8 7 3.3732 0.4612 -2.2540 9 14 5.9699 1.1143 -1.5422 10 1 6.6088 -0.1640 -1.1387 11 1 6.2706 1.3890 -2.9702 12 1 6.5000 2.2191 -0.7033 13 7 1.6701 2.0912 1.2604 14 6 0.4545 2.6575 1.3955 15 8 -0.3330 2.6304 0.4735 16 6 0.0742 3.3252 2.6919 17 1 0.8201 4.0777 2.9477 18 6 -0.0045 2.2743 3.8084 19 7 -0.4248 2.9643 5.0400 20 6 0.1498 2.6849 6.2267 21 6 1.1444 1.5580 6.3355 22 8 -0.1335 3.3405 7.2070 23 6 -1.4418 3.9286 4.9335 24 6 -2.0725 4.4019 6.0729 25 6 -3.0707 5.3523 5.9633 26 6 -3.4392 5.8292 4.7188 27 6 -2.8144 5.3595 3.5791 28 6 -1.8130 4.4050 3.6792 29 8 -1.2069 3.9455 2.5530 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 3.7820 0.1388 -3.0725 36 1 2.3000 2.1132 1.9977 37 1 0.9740 1.8173 3.9559 38 1 -0.7350 1.5092 3.5453 39 1 2.0281 1.7948 5.7429 40 1 1.4312 1.4260 7.3788 41 1 0.6933 0.6380 5.9635 42 1 -1.7852 4.0288 7.0449 43 1 -3.5635 5.7218 6.8504 44 1 -4.2191 6.5719 4.6372 45 1 -3.1061 5.7360 2.6098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762721607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:06 Heat of formation + Delta-G solvation = -66.643411 kcal Electronic energy + Delta-G solvation = -29239.678256 eV Core-core repulsion = 25223.072036 eV Total energy + Delta-G solvation = -4016.606220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64714 -39.62817 -38.93277 -37.40787 -35.74924 -35.14153 -32.69212 -31.73600 -31.35621 -30.59711 -29.83172 -28.15278 -26.97194 -25.09534 -23.50547 -23.08457 -21.87023 -20.56044 -19.77703 -19.54801 -18.40238 -17.79528 -17.66252 -16.61767 -16.28900 -15.96596 -15.61754 -15.43213 -15.21580 -14.77215 -14.47942 -14.22150 -14.07336 -13.85898 -13.55577 -13.53152 -13.18023 -12.79220 -12.77896 -12.48692 -12.23372 -12.01234 -11.96203 -11.68901 -11.51081 -11.33847 -11.14320 -11.08636 -10.91230 -10.45773 -10.42452 -10.31975 -9.84002 -9.75633 -9.23299 -9.13250 -8.66342 -8.58989 -8.03817 -7.97430 -6.23540 -4.33090 1.09052 1.29944 2.24444 2.30356 2.77162 3.01811 3.17442 3.25972 3.27586 3.68512 3.91229 4.06653 4.23808 4.27936 4.57063 4.70399 4.80860 4.85602 4.95179 5.03462 5.09061 5.11242 5.16546 5.27389 5.32841 5.37232 5.50851 5.70548 6.02668 6.15147 6.26822 6.27811 6.31420 6.44148 6.51749 6.69207 6.87980 6.90810 7.05348 7.16192 7.25880 7.26941 7.47148 7.58021 7.68563 7.74388 8.01592 8.40934 8.62805 8.86490 9.34269 10.82504 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003198 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.239066 B = 8754.182294 C = 9534.477027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.272 3.728 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.511 3.489 15 O -0.513 6.513 16 C 0.059 3.941 17 H 0.099 0.901 18 C 0.077 3.923 19 N -0.556 5.556 20 C 0.518 3.482 21 C -0.176 4.176 22 O -0.523 6.523 23 C 0.073 3.927 24 C -0.113 4.113 25 C -0.135 4.135 26 C -0.105 4.105 27 C -0.127 4.127 28 C 0.100 3.900 29 O -0.279 6.279 30 H 0.025 0.975 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.388 0.612 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 3.969 15.737 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.171 3.829 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.292 3.708 15 O -0.388 6.388 16 C -0.002 4.002 17 H 0.117 0.883 18 C -0.046 4.046 19 N -0.282 5.282 20 C 0.309 3.691 21 C -0.235 4.235 22 O -0.399 6.399 23 C -0.020 4.020 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.124 4.124 27 C -0.146 4.146 28 C 0.052 3.948 29 O -0.192 6.192 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.220 0.780 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.179 0.821 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.957 4.130 15.185 17.634 hybrid contribution 1.471 -0.054 0.179 1.482 sum -6.486 4.077 15.365 17.169 Atomic orbital electron populations 1.21865 0.98244 0.98296 1.01292 1.21941 0.92642 0.99605 1.02177 1.18895 0.94642 0.89219 0.80130 0.92815 1.21166 0.90411 1.44280 1.01783 0.91994 1.24883 0.98610 0.94483 0.95582 1.69915 1.35447 1.38888 1.07326 0.86446 0.84647 0.78394 0.77704 1.20592 1.20976 1.19786 1.46466 1.13426 1.56063 1.19073 1.19423 0.83740 0.80201 0.87403 1.90749 1.50162 1.57688 1.40236 1.22742 0.85819 0.95817 0.95829 0.88341 1.22672 1.03927 0.95223 0.82779 1.45839 1.35474 1.38007 1.08860 1.21031 0.81490 0.85269 0.81305 1.22017 0.98639 0.96752 1.06117 1.90578 1.61910 1.50844 1.36595 1.18020 0.94249 0.95573 0.94168 1.21685 0.95134 0.97485 0.98950 1.21041 0.98178 0.98521 0.97622 1.20949 0.99721 1.00036 0.91693 1.20449 0.97473 0.96571 1.00067 1.18714 0.96501 0.95702 0.83834 1.86203 1.31526 1.72808 1.28656 0.95611 0.94411 0.93008 0.88574 0.94817 0.92428 0.77956 0.86670 0.88367 0.88439 0.88214 0.88761 0.82137 0.85593 0.85331 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.55 16 2 C -0.12 -2.75 5.49 -26.73 -0.15 -2.90 16 3 C 0.27 6.23 2.17 -69.08 -0.15 6.08 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.11 8.67 -34.44 -0.30 -13.41 16 6 H 0.06 1.43 7.72 -52.48 -0.41 1.02 16 7 C 0.07 1.73 5.35 -17.82 -0.10 1.64 16 8 N -0.88 -23.45 11.52 55.43 0.64 -22.81 16 9 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 13 N -0.70 -12.58 5.00 -54.93 -0.27 -12.86 16 14 C 0.51 9.19 5.79 -10.98 -0.06 9.13 16 15 O -0.51 -11.44 13.66 -14.25 -0.19 -11.64 16 16 C 0.06 0.85 3.38 -27.61 -0.09 0.76 16 17 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.08 0.87 5.67 -3.33 -0.02 0.85 16 19 N -0.56 -6.80 3.01 -112.35 -0.34 -7.14 16 20 C 0.52 5.92 7.70 -10.98 -0.08 5.84 16 21 C -0.18 -1.25 8.81 36.01 0.32 -0.93 16 22 O -0.52 -7.44 13.97 5.55 0.08 -7.37 16 23 C 0.07 1.02 6.32 -83.37 -0.53 0.49 16 24 C -0.11 -1.48 8.94 -39.45 -0.35 -1.83 16 25 C -0.13 -1.48 10.05 -39.56 -0.40 -1.88 16 26 C -0.11 -1.12 10.03 -39.58 -0.40 -1.51 16 27 C -0.13 -1.60 9.97 -39.42 -0.39 -1.99 16 28 C 0.10 1.46 6.51 -39.05 -0.25 1.21 16 29 O -0.28 -4.58 9.51 -39.25 -0.37 -4.95 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.74 5.63 -51.93 -0.29 0.45 16 32 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 33 H 0.10 2.40 6.22 -51.93 -0.32 2.08 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.39 5.68 8.46 -40.82 -0.35 5.33 16 37 H 0.12 0.94 6.35 -51.93 -0.33 0.61 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.10 0.54 7.60 -51.93 -0.39 0.15 16 40 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.16 2.20 5.18 -52.54 -0.27 1.92 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -31.51 364.81 -8.73 -40.24 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.10 Total: 7.47 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.64 Total: -1.00 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.03 Total: -42.80 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.49 Total: -23.96 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.51 -8.73 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.403 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds